View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1531_1D_low_52 (Length: 216)
Name: NF1531_1D_low_52
Description: NF1531_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1531_1D_low_52 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 180; Significance: 2e-97; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 13 - 216
Target Start/End: Original strand, 1660765 - 1660968
Alignment:
| Q |
13 |
gttggtggaatgaacgtttggatcggcgttaaatgtacgtttgcaccttcaaaatggtatgtaagtgttggccctttaagattagtttgtgtacgatagc |
112 |
Q |
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| T |
1660765 |
gttggtggaatgaacgtttggatcggcgttaaaagtaaatttgcaccttcaaaatggtatgtaagtgttggtcctttaagattagtttgtgtacgatagc |
1660864 |
T |
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| Q |
113 |
aaagttgaggacccaaacttggatcatttgtaatgggttctaatggaaccttgtttttgacttcaacatacactctatcatacaattgttgtggtaatat |
212 |
Q |
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| T |
1660865 |
aaagttgaggacccaaacttggatcatttgtaatgagttctaatggaacattgtttttgacttcaacatacactctatcatacaattgttgtggtaatat |
1660964 |
T |
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| Q |
213 |
attc |
216 |
Q |
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|||| |
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| T |
1660965 |
attc |
1660968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 13 - 216
Target Start/End: Original strand, 1679563 - 1679766
Alignment:
| Q |
13 |
gttggtggaatgaacgtttggatcggcgttaaatgtacgtttgcaccttcaaaatggtatgtaagtgttggccctttaagattagtttgtgtacgatagc |
112 |
Q |
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| T |
1679563 |
gttggtggaatgaacgtttggatcggcgttaaaagtaaatttgcaccttcaaaatggtatgtaagtgttggccctttaagattagtttgtgtacgatagc |
1679662 |
T |
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| Q |
113 |
aaagttgaggacccaaacttggatcatttgtaatgggttctaatggaaccttgtttttgacttcaacatacactctatcatacaattgttgtggtaatat |
212 |
Q |
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| T |
1679663 |
aaagttgaggacccaaacttggatcatccgtaatgggttccaatggaactttgtttttgacttcaacatacactctatcatacaattgttgtggtaatat |
1679762 |
T |
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| Q |
213 |
attc |
216 |
Q |
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|||| |
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| T |
1679763 |
attc |
1679766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 13 - 203
Target Start/End: Original strand, 1668030 - 1668220
Alignment:
| Q |
13 |
gttggtggaatgaacgtttggatcggcgttaaatgtacgtttgcaccttcaaaatggtatgtaagtgttggccctttaagattagtttgtgtacgatagc |
112 |
Q |
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|||||||||||||||||||||||||| |||||| |||| ||||||||| |||||||| |||| || ||||| |||||||||||||||||||||||||| | |
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| T |
1668030 |
gttggtggaatgaacgtttggatcggtgttaaaagtacatttgcacctacaaaatggaatgttagagttggtcctttaagattagtttgtgtacgataac |
1668129 |
T |
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| Q |
113 |
aaagttgaggacccaaacttggatcatttgtaatgggttctaatggaaccttgtttttgacttcaacatacactctatcatacaattgttg |
203 |
Q |
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| T |
1668130 |
aaagttgagtacccaaacttggatcatctgtaatgggtttcaatgcaactttatttcttacttcagcaaacactttatcatacaattgttg |
1668220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 138
Target Start/End: Original strand, 24546457 - 24546576
Alignment:
| Q |
19 |
ggaatgaacgtttggatcggcgttaaatgtacgtttgcaccttcaaaatggtatgtaagtgttggccctttaagattagtttgtgtacgatagcaaagtt |
118 |
Q |
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|||||||| ||||| | ||||||||| |||| | |||||||||||||| ||| || || | ||||||||||||||| |||| ||||||||||||| |
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| T |
24546457 |
ggaatgaagatttgggtgggcgttaaaagtacatcggcaccttcaaaatgagctgttagcgtcgttcctttaagattagttggtgtccgatagcaaagtt |
24546556 |
T |
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| Q |
119 |
gaggacccaaacttggatca |
138 |
Q |
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| T |
24546557 |
ggtaacccaaagttggatca |
24546576 |
T |
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