View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1531_1D_low_55 (Length: 212)
Name: NF1531_1D_low_55
Description: NF1531_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1531_1D_low_55 |
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| [»] chr4 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 33 - 205
Target Start/End: Complemental strand, 8841398 - 8841226
Alignment:
| Q |
33 |
tattacctatcaaatcacaacgaacatttgcatttgacattgccagttgcgaggtgttatacatacatctatatttatggcttgtatttttaaaaaatat |
132 |
Q |
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| T |
8841398 |
tattacctatcaaatcacaacgaacatttgcatttgacattgccagttgcgaggtgttatacatacatctatatttatggcttgtattttttaaaaatat |
8841299 |
T |
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| Q |
133 |
taatatctcactcgaacaaacctcatgtcaatatattttattgtttaggaggaattacacttacttgtttttt |
205 |
Q |
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| T |
8841298 |
taatatctcactcgaacaaacctcatgtcaatatattttattgtttagaaggaattacacttacttgtttttt |
8841226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 153 - 212
Target Start/End: Complemental strand, 23927089 - 23927030
Alignment:
| Q |
153 |
cctcatgtcaatatattttattgtttaggaggaattacacttacttgttttttagtccaa |
212 |
Q |
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| T |
23927089 |
cctcatgtcaatatattttattgtttaggaggaattacacttacttgttttttagtccaa |
23927030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 153 - 212
Target Start/End: Complemental strand, 26614290 - 26614231
Alignment:
| Q |
153 |
cctcatgtcaatatattttattgtttaggaggaattacacttacttgttttttagtccaa |
212 |
Q |
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| T |
26614290 |
cctcatgtcaatatattttattgtttaggaggaattgcacttacttgttttttagtccaa |
26614231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 8841726 - 8841693
Alignment:
| Q |
1 |
gaagacactcatgacctgcataacataacatata |
34 |
Q |
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| T |
8841726 |
gaagacactcatgacctgcataacataacatata |
8841693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 153 - 212
Target Start/End: Original strand, 18337084 - 18337143
Alignment:
| Q |
153 |
cctcatgtcaatatattttattgtttaggaggaattacacttacttgttttttagtccaa |
212 |
Q |
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| T |
18337084 |
cctcatgtcaatatattttattgtttaggaggaattacacttacttgttttttagtccaa |
18337143 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 153 - 212
Target Start/End: Complemental strand, 13090122 - 13090063
Alignment:
| Q |
153 |
cctcatgtcaatatattttattgtttaggaggaattacacttacttgttttttagtccaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
13090122 |
cctcatgtcaatatattttattgtttaggaggaattacacttgcttgttttttagtccaa |
13090063 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 153 - 208
Target Start/End: Original strand, 272337 - 272392
Alignment:
| Q |
153 |
cctcatgtcaatatattttattgtttaggaggaattacacttacttgttttttagt |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
272337 |
cctcatgtcaatatattttattgtttaggaggaattacacttacttgttttctagt |
272392 |
T |
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