View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1531_1D_low_56 (Length: 208)
Name: NF1531_1D_low_56
Description: NF1531_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1531_1D_low_56 |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 5e-95; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 2888120 - 2887926
Alignment:
| Q |
1 |
gtttgcctaattcttctataagttgcttgtttctcctgaacaatagtttataacagtgaggtctttttccaatatgatcatagttggtactataattatt |
100 |
Q |
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| T |
2888120 |
gtttgcctaattcttctataagttgcttgtttctcctgaacaatagtttataacagtgaggtctttttccaatatgatcatagttggtacta-aattatg |
2888022 |
T |
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| Q |
101 |
aatccatattttcaaataaattttcttacctgtacaactcagaatttttgtatgcatgatgaaaatcaattcctaaagtaagttcttgtgctgaac |
196 |
Q |
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| T |
2888021 |
aatccatattttcaaataaatttgcttacctgtacaactcagaatttttgtatgcatgatgaaaatcaattcctagagtaagttcttgtgctgaac |
2887926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 125 - 196
Target Start/End: Original strand, 2896357 - 2896428
Alignment:
| Q |
125 |
cttacctgtacaactcagaatttttgtatgcatgatgaaaatcaattcctaaagtaagttcttgtgctgaac |
196 |
Q |
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| T |
2896357 |
cttacctgtacaactcagaatttttgtatatatcatgaaaatcaacacctaaagtatgttcttgtgctgaac |
2896428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 2896247 - 2896304
Alignment:
| Q |
1 |
gtttgcctaattcttctataagttgcttgtttctcctgaacaatagtttataacagtg |
58 |
Q |
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| T |
2896247 |
gtttgcctaattctactataagttgcttgtttctcctaaagaatagtttatatcagtg |
2896304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 57
Target Start/End: Complemental strand, 2878610 - 2878562
Alignment:
| Q |
9 |
aattcttctataagttgcttgtttctcctgaacaatagtttataacagt |
57 |
Q |
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| T |
2878610 |
aattcttctataagttgcttatttctcctgaacaatagtgtataacagt |
2878562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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