View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1531_1D_low_57 (Length: 208)
Name: NF1531_1D_low_57
Description: NF1531_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1531_1D_low_57 |
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| [»] chr7 (7 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 174; Significance: 8e-94; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 7 - 208
Target Start/End: Original strand, 17734406 - 17734607
Alignment:
| Q |
7 |
acatcagagcagaatctcatcggaaaatcactgaccaacctcaccaacgtttctctgaacgtcaccaaacacttgttatccgataaaaaactcaatgaaa |
106 |
Q |
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| T |
17734406 |
acatcagagcagaatctcatcggaaaatcactgacaaacctcaccaacgtttctctgaacatcaccaaacacttgttatccaatcaaaaactcaatgaaa |
17734505 |
T |
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| Q |
107 |
agaacgttgtgttttcaccattatcgctcaacaccgtactcattatgatcgctaccggctccgagggtcccacacaaaaccaacttctctccttcctgca |
206 |
Q |
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| T |
17734506 |
agaacgttgtgttttcaccattatcgctcaacaccgtactcattatgatcactgccggctccgagggtcccacacaaaaccaacttctctccttcctcca |
17734605 |
T |
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| Q |
207 |
gt |
208 |
Q |
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|| |
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| T |
17734606 |
gt |
17734607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 17743656 - 17743847
Alignment:
| Q |
17 |
agaatctcatcggaaaatcactgaccaacctcaccaacgtttctctgaacgtcaccaaacacttgttatccgataaaaaactcaatgaaaagaacgttgt |
116 |
Q |
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|||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||| || |||||||||||||||||||| |||| |
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| T |
17743656 |
agaatctcatcggaaaatcactcaccaaattcaccaacgtttctctgaacatcaccaaacacttgttatccaatcaaaaactcaatgaaaagaacattgt |
17743755 |
T |
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| Q |
117 |
gttttcaccattatcgctcaacaccgtactcattatgatcgctaccggctccgagggtcccacacaaaaccaacttctctccttcctgcagt |
208 |
Q |
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| T |
17743756 |
gttttcaccattatcgctcaacaccgtactcattatgatcgctaccggctccgagggtcccacacaaaaccaacttctctccttcctccagt |
17743847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 15 - 208
Target Start/End: Original strand, 17716363 - 17716556
Alignment:
| Q |
15 |
gcagaatctcatcggaaaatcactgaccaacctcaccaacgtttctctgaacgtcaccaaacacttgttatccgataaaaaactcaatgaaaagaacgtt |
114 |
Q |
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||||||||||||| |||||||||| || ||||| ||||||||||| ||||| |||||||||||||||||||| || |||||||||| |||||||| ||| |
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| T |
17716363 |
gcagaatctcatcagaaaatcactcacaaacctaaccaacgtttccatgaacatcaccaaacacttgttatccaatcaaaaactcaaagaaaagaatgtt |
17716462 |
T |
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| Q |
115 |
gtgttttcaccattatcgctcaacaccgtactcattatgatcgctaccggctccgagggtcccacacaaaaccaacttctctccttcctgcagt |
208 |
Q |
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| T |
17716463 |
gtgttttcaccattatcgctcaacaccgtgctcagtatgatcgctaccggctccgagggtcccactcaaaaacaacttctctccttcctccagt |
17716556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 15 - 208
Target Start/End: Original strand, 16729303 - 16729496
Alignment:
| Q |
15 |
gcagaatctcatcggaaaatcactgaccaacctcaccaacgtttctctgaacgtcaccaaacacttgttatccgataaaaaactcaatgaaaagaacgtt |
114 |
Q |
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||||||||||||| |||||||||| || ||||| ||||||||||| ||||| |||||||||||||||||||| || || ||||||| |||||||||||| |
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| T |
16729303 |
gcagaatctcatcagaaaatcactcacaaacctaaccaacgtttccatgaacatcaccaaacacttgttatccaatcaagaactcaaagaaaagaacgtt |
16729402 |
T |
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| Q |
115 |
gtgttttcaccattatcgctcaacaccgtactcattatgatcgctaccggctccgagggtcccacacaaaaccaacttctctccttcctgcagt |
208 |
Q |
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| T |
16729403 |
gtgttttcaccattatcgctcaacaccgtgctcagtatgatcgctaccagctccaagggtcccactcaaaaacaacttctctccttcctccagt |
16729496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 15 - 208
Target Start/End: Original strand, 17706375 - 17706568
Alignment:
| Q |
15 |
gcagaatctcatcggaaaatcactgaccaacctcaccaacgtttctctgaacgtcaccaaacacttgttatccgataaaaaactcaatgaaaagaacgtt |
114 |
Q |
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||||||||||||| |||||||||| || ||||| ||||||||||| ||||| |||||||||||||||||||| || || ||||||| |||||||||||| |
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| T |
17706375 |
gcagaatctcatcagaaaatcactcacaaacctaaccaacgtttccatgaacatcaccaaacacttgttatccaatcaagaactcaaagaaaagaacgtt |
17706474 |
T |
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| Q |
115 |
gtgttttcaccattatcgctcaacaccgtactcattatgatcgctaccggctccgagggtcccacacaaaaccaacttctctccttcctgcagt |
208 |
Q |
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||||||||||||||||||||||||||||| |||| ||||||||||||| ||||| |||||||||| ||||| ||||||||||||||||| |||| |
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| T |
17706475 |
gtgttttcaccattatcgctcaacaccgtgctcagtatgatcgctaccagctccaagggtcccactcaaaaacaacttctctccttcctccagt |
17706568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 15 - 200
Target Start/End: Original strand, 16720430 - 16720615
Alignment:
| Q |
15 |
gcagaatctcatcggaaaatcactgaccaacctcaccaacgtttctctgaacgtcaccaaacacttgttatccgataaaaaactcaatgaaaagaacgtt |
114 |
Q |
| |
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|||||||||||||||||||||| | || ||||| |||||| |||| ||||| |||||||||||||||||||| || |||||||||| ||| |||||||| |
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| T |
16720430 |
gcagaatctcatcggaaaatcatttacaaacctaaccaacatttccatgaacatcaccaaacacttgttatccaatcaaaaactcaaagaagagaacgtt |
16720529 |
T |
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| Q |
115 |
gtgttttcaccattatcgctcaacaccgtactcattatgatcgctaccggctccgagggtcccacacaaaaccaacttctctcctt |
200 |
Q |
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| T |
16720530 |
gtgttttcaccattatcgcttaacaccgtgctcagtatgattgctaccggctccgagggtcccactcaaaaacaacttctctcctt |
16720615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 15 - 200
Target Start/End: Original strand, 17697444 - 17697629
Alignment:
| Q |
15 |
gcagaatctcatcggaaaatcactgaccaacctcaccaacgtttctctgaacgtcaccaaacacttgttatccgataaaaaactcaatgaaaagaacgtt |
114 |
Q |
| |
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|||||||||||||||||||||| | || ||||| |||||| |||| ||||| |||||||||||||||||||| || |||||||||| ||| |||||||| |
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| T |
17697444 |
gcagaatctcatcggaaaatcatttacaaacctaaccaacatttccatgaacatcaccaaacacttgttatccaatcaaaaactcaaagaagagaacgtt |
17697543 |
T |
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| Q |
115 |
gtgttttcaccattatcgctcaacaccgtactcattatgatcgctaccggctccgagggtcccacacaaaaccaacttctctcctt |
200 |
Q |
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| T |
17697544 |
gtgttttcaccattatcgcttaacaccgtgctcagtatgattgctaccggctccgagggtcccactcaaaaacaacttctctcctt |
17697629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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