View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1531_1D_low_59 (Length: 206)
Name: NF1531_1D_low_59
Description: NF1531_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1531_1D_low_59 |
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| [»] chr5 (2 HSPs) |
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| [»] scaffold0117 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 69 - 206
Target Start/End: Complemental strand, 14116299 - 14116162
Alignment:
| Q |
69 |
gttgaatcatcccatcaggaggtgagtcatgaatcgtcaacacagagtccgaagccgctcccaactttgcaagaaaatctgcatagtaatttccctcacg |
168 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
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| T |
14116299 |
gttgaatcatcccatcaggaggtgaggcatgaatcgtcaacacagagtccgaagccgctcccaactttgcaagaaaatttgcgcagtaatttccctcacg |
14116200 |
T |
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| Q |
169 |
gagagtgtgaaaaacagaagccttgctggtaatgatga |
206 |
Q |
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| T |
14116199 |
gagagtgtgaaaaacagaagccttgctagtaatgatga |
14116162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 69 - 203
Target Start/End: Original strand, 31727488 - 31727622
Alignment:
| Q |
69 |
gttgaatcatcccatcaggaggtgagtcatgaatcgtcaacacagagtccgaagccgctcccaactttgcaagaaaatctgcatagtaatttccctcacg |
168 |
Q |
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|||||||||| |||||| |||||||| | |||||||||||||||| ||| ||||||||||||||||||||||||||||||| | |||||||||||| | |
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| T |
31727488 |
gttgaatcattccatcaagaggtgaggcgtgaatcgtcaacacagggtctgaagccgctcccaactttgcaagaaaatctgggcaataatttccctcaag |
31727587 |
T |
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| Q |
169 |
gagagtgtgaaaaacagaagccttgctggtaatga |
203 |
Q |
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| T |
31727588 |
gagagtgtgaaaaatagaagccttgttggtaatga |
31727622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 109; Significance: 5e-55; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 69 - 201
Target Start/End: Complemental strand, 43924487 - 43924355
Alignment:
| Q |
69 |
gttgaatcatcccatcaggaggtgagtcatgaatcgtcaacacagagtccgaagccgctcccaactttgcaagaaaatctgcatagtaatttccctcacg |
168 |
Q |
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| T |
43924487 |
gttgaatcatcccatcaggaggtgagacatgaatcgtcaacacatagtcagaagccgctcccaactttgcaagaaaatctgcgcagtaatttccctcacg |
43924388 |
T |
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| Q |
169 |
gagagtgtgaaaaacagaagccttgctggtaat |
201 |
Q |
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| T |
43924387 |
aagagtgtgaaaaacagaagccttgctggtaat |
43924355 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 69 - 206
Target Start/End: Complemental strand, 48850389 - 48850252
Alignment:
| Q |
69 |
gttgaatcatcccatcaggaggtgagtcatgaatcgtcaacacagagtccgaagccgctcccaactttgcaagaaaatctgcatagtaatttccctcacg |
168 |
Q |
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||||||||||||| |||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||||||||| || |||||| ||||||||| |
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| T |
48850389 |
gttgaatcatcccttcaggaggtgagacatgaatcgtcaacacagtgtctgaagccgctcccaactttgcaagaaaaaatgtgcagtaatatccctcacg |
48850290 |
T |
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| Q |
169 |
gagagtgtgaaaaacagaagccttgctggtaatgatga |
206 |
Q |
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| T |
48850289 |
gagagtgtgaaaaacagaagcattgctggtaatgatga |
48850252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0117 (Bit Score: 107; Significance: 8e-54; HSPs: 1)
Name: scaffold0117
Description:
Target: scaffold0117; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 69 - 203
Target Start/End: Complemental strand, 27166 - 27032
Alignment:
| Q |
69 |
gttgaatcatcccatcaggaggtgagtcatgaatcgtcaacacagagtccgaagccgctcccaactttgcaagaaaatctgcatagtaatttccctcacg |
168 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||| |
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| T |
27166 |
gttgaatcatcccatcaggaggtgagacatgaatcgtcaacacagagtccgaagccgctcccaacatttcaagaaaatctgcgcagtaatttccctcaca |
27067 |
T |
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| Q |
169 |
gagagtgtgaaaaacagaagccttgctggtaatga |
203 |
Q |
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| T |
27066 |
aagagtgtgaaaaacagaagccttgctggtaatga |
27032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 100; Significance: 1e-49; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 71 - 206
Target Start/End: Original strand, 1577093 - 1577228
Alignment:
| Q |
71 |
tgaatcatcccatcaggaggtgagtcatgaatcgtcaacacagagtccgaagccgctcccaactttgcaagaaaatctgcatagtaatttccctcacgga |
170 |
Q |
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|||||||||||||||||||||||| |||||||| |||||||||| ||||||||||||||||||||||||| ||||||||| | |||||||||||||||| |
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| T |
1577093 |
tgaatcatcccatcaggaggtgaggcatgaatcttcaacacagaatccgaagccgctcccaactttgcaaaaaaatctgcgcaataatttccctcacgga |
1577192 |
T |
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| Q |
171 |
gagtgtgaaaaacagaagccttgctggtaatgatga |
206 |
Q |
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| T |
1577193 |
gagtgtgaaaaacaaaagtcttgctggtaatgatga |
1577228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 73 - 206
Target Start/End: Original strand, 42923427 - 42923560
Alignment:
| Q |
73 |
aatcatcccatcaggaggtgagtcatgaatcgtcaacacagagtccgaagccgctcccaactttgcaagaaaatctgcatagtaatttccctcacggaga |
172 |
Q |
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| T |
42923427 |
aatcatcccattaggaggtgaggcatgaatcgtcaacacaaaatttgaagccgcttgcaactttacaagaaaatttgcgcattaatttccctcacggaga |
42923526 |
T |
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| Q |
173 |
gtgtgaaaaacagaagccttgctggtaatgatga |
206 |
Q |
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| T |
42923527 |
gtgtgaaaaacagaagccttgctggtaacgatga |
42923560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 10 - 76
Target Start/End: Original strand, 30401024 - 30401090
Alignment:
| Q |
10 |
gttaaagccggctacagtgacaatactcgcagttctgttcacgcttcttcaactaatttgttgaatc |
76 |
Q |
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| T |
30401024 |
gttaaagccggctacagtgacaatactcgcagttctgttcacgcttcttcaactaatttgttgaatc |
30401090 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 72 - 204
Target Start/End: Complemental strand, 40924588 - 40924456
Alignment:
| Q |
72 |
gaatcatcccatcaggaggtgagtcatgaatcgtcaacacagagtccgaagccgctcccaactttgcaagaaaatctgcatagtaatttccctcacggag |
171 |
Q |
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|||| ||||||| || ||| ||| |||||||| |||||||||||| |||||||||| || ||| || |||||||||||| |||||||||||||| |||| |
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| T |
40924588 |
gaattatcccattagaaggggaggtatgaatcgccaacacagagtctgaagccgctctcatcttagctagaaaatctgcacagtaatttccctcatggag |
40924489 |
T |
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| Q |
172 |
agtgtgaaaaacagaagccttgctggtaatgat |
204 |
Q |
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| T |
40924488 |
agtgtgaaaaacagaagcctcgctggtaatgat |
40924456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 72 - 204
Target Start/End: Original strand, 55416395 - 55416527
Alignment:
| Q |
72 |
gaatcatcccatcaggaggtgagtcatgaatcgtcaacacagagtccgaagccgctcccaactttgcaagaaaatctgcatagtaatttccctcacggag |
171 |
Q |
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||||||||||||||| ||| || |||||||||||||||||| || ||||| ||||||| ||| || |||||||||| | | ||||||||||| |||| |
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| T |
55416395 |
gaatcatcccatcagaagggaaggtatgaatcgtcaacacagaatctgaagctgctcccatcttagctagaaaatctgtacaataatttccctcctggag |
55416494 |
T |
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| Q |
172 |
agtgtgaaaaacagaagccttgctggtaatgat |
204 |
Q |
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|||| || ||||||||| |||| |||||||||| |
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| T |
55416495 |
agtgcgataaacagaagacttgttggtaatgat |
55416527 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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