View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1531_1D_low_62 (Length: 201)

Name: NF1531_1D_low_62
Description: NF1531_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1531_1D_low_62
NF1531_1D_low_62
[»] chr8 (4 HSPs)
chr8 (22-199)||(5766525-5766702)
chr8 (22-199)||(14004102-14004279)
chr8 (54-158)||(17635608-17635712)
chr8 (54-158)||(17642887-17642991)
[»] chr4 (4 HSPs)
chr4 (54-115)||(1481686-1481747)
chr4 (53-161)||(661855-661963)
chr4 (53-161)||(8186310-8186418)
chr4 (61-161)||(55907634-55907734)
[»] chr6 (5 HSPs)
chr6 (56-140)||(7132323-7132407)
chr6 (56-140)||(7135246-7135330)
chr6 (56-140)||(7138169-7138253)
chr6 (56-161)||(8913374-8913479)
chr6 (108-148)||(28935348-28935388)
[»] chr2 (1 HSPs)
chr2 (61-161)||(1036570-1036670)
[»] chr1 (1 HSPs)
chr1 (76-160)||(7555196-7555280)


Alignment Details
Target: chr8 (Bit Score: 166; Significance: 5e-89; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 22 - 199
Target Start/End: Original strand, 5766525 - 5766702
Alignment:
Q  22 cacttcttactcaaatctctagcttcccaatgttgaaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagccttctc 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  5766525 cacttcttactcaaatctctagcttcccaatgttgaaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctc 5766624  T
Q  122 tcagaacattacaactttgacctcacttatttgttccaaccttatttctcttaatagcactgatgtccatctcattgc 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||    
T  5766625 tcagaacattacaactttgacctcacttatttgttccaaccttatttctcttaatagcactgatatccacctcattgc 5766702  T

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Target: chr8; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 22 - 199
Target Start/End: Complemental strand, 14004279 - 14004102
Alignment:
Q  22 cacttcttactcaaatctctagcttcccaatgttgaaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagccttctc 121  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  14004279 cacttcttactcaaatctctagcttcccaatgttcaaactcacatcgctcaatctttccaaccaacccatccttcctgctaatggtttgcgagctttctc 14004180  T
Q  122 tcagaacattacaactttgacctcacttatttgttccaaccttatttctcttaatagcactgatgtccatctcattgc 199  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||    
T  14004179 tcagaacattacaactttgacctcacttatttgttccaaccttaattctcttaatagcactgatctccatctcattgc 14004102  T

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Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 54 - 158
Target Start/End: Original strand, 17635608 - 17635712
Alignment:
Q  54 ttgaaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagccttctctcagaacattacaactttgacctcacttattt 153  Q
    |||||||||| ||| |||||||| ||||||||||||| | ||||  ||||||| || ||||| ||||| | ||| ||||||||||||||||| || | ||    
T  17635608 ttgaaactcatatcactcaatctgtccaaccaactcaccattccaactaatgggttacgagctttctcccggaatattacaactttgacctctctcactt 17635707  T
Q  154 gttcc 158  Q
    |||||    
T  17635708 gttcc 17635712  T

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Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 54 - 158
Target Start/End: Original strand, 17642887 - 17642991
Alignment:
Q  54 ttgaaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagccttctctcagaacattacaactttgacctcacttattt 153  Q
    |||||||||||||| |||||||| |||||||| |||| | ||||  | ||||| || | ||| ||||| ||||| ||||||||||||||||| || | ||    
T  17642887 ttgaaactcacatcactcaatctctccaaccatctcaccattcccaccaatgggttacaagctttctcccagaatattacaactttgacctctctcactt 17642986  T
Q  154 gttcc 158  Q
    |||||    
T  17642987 gttcc 17642991  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 1481747 - 1481686
Alignment:
Q  54 ttgaaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagc 115  Q
    ||||||||||||||||||||| | || |||||||||| |||||| |||||||| ||||||||    
T  1481747 ttgaaactcacatcgctcaatatctcaaaccaactcaaccttcccgctaatggcttgcgagc 1481686  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 53 - 161
Target Start/End: Complemental strand, 661963 - 661855
Alignment:
Q  53 gttgaaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagccttctctcagaacattacaactttgacctcacttatt 152  Q
    ||||||| |||| || |||||||| |||||||||  || | |||| ||||||||||||||||| ||||| ||  | ||||||||||| ||||| || |||    
T  661963 gttgaaaatcacgtcactcaatctctccaaccaaaccaccattcccgctaatggtttgcgagctttctcccaatatattacaactttaacctctctcatt 661864  T
Q  153 tgttccaac 161  Q
    |||| ||||    
T  661863 tgttacaac 661855  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 161
Target Start/End: Original strand, 8186310 - 8186418
Alignment:
Q  53 gttgaaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagccttctctcagaacattacaactttgacctcacttatt 152  Q
    |||||| |||||||| |||||||| || ||| ||| || | ||||||| ||||| |||||||   |||| |  || |||||||||||||||||||| |      
T  8186310 gttgaacctcacatcactcaatctctctaacaaacccaccattcctgcaaatggattgcgagttctctcccgaaatattacaactttgacctcactcaca 8186409  T
Q  153 tgttccaac 161  Q
    |||||||||    
T  8186410 tgttccaac 8186418  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 161
Target Start/End: Original strand, 55907634 - 55907734
Alignment:
Q  61 tcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagccttctctcagaacattacaactttgacctcacttatttgttccaa 160  Q
    |||| ||||||||||| ||||||||||  ||| | || |||| ||| || ||||| ||||| || || |||||||||||||  || || |||||||||||    
T  55907634 tcacttcgctcaatctctccaaccaacctatcatccccgctactggcttacgagctttctcccaaaatattacaactttgaattctctcatttgttccaa 55907733  T
Q  161 c 161  Q
    |    
T  55907734 c 55907734  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 56 - 140
Target Start/End: Complemental strand, 7132407 - 7132323
Alignment:
Q  56 gaaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagccttctctcagaacattacaactttg 140  Q
    ||||||||||||||| | | | |||||||||| || | ||||||| ||||| |||||||| ||||| || |||||||||||||||    
T  7132407 gaaactcacatcgcttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttg 7132323  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 56 - 140
Target Start/End: Complemental strand, 7135330 - 7135246
Alignment:
Q  56 gaaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagccttctctcagaacattacaactttg 140  Q
    ||||||||||||||| | | | |||||||||| || | ||||||| ||||| |||||||| ||||| || |||||||||||||||    
T  7135330 gaaactcacatcgcttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttg 7135246  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 56 - 140
Target Start/End: Complemental strand, 7138253 - 7138169
Alignment:
Q  56 gaaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagccttctctcagaacattacaactttg 140  Q
    ||||||||||||||| | | | |||||||||| || | ||||||| ||||| |||||||| ||||| || |||||||||||||||    
T  7138253 gaaactcacatcgcttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttg 7138169  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 161
Target Start/End: Original strand, 8913374 - 8913479
Alignment:
Q  56 gaaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagccttctctcagaacattacaactttgacctcacttatttgt 155  Q
    ||||||||||||||||||| | |||||||||   | | ||||||||||||| |||| ||  || ||| | || ||||||||||||||||| || | ||||    
T  8913374 gaaactcacatcgctcaatatctccaaccaatggacctttcctgctaatgggttgctagttttatctaaaaagattacaactttgacctctctcaattgt 8913473  T
Q  156 tccaac 161  Q
    ||||||    
T  8913474 tccaac 8913479  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 148
Target Start/End: Complemental strand, 28935388 - 28935348
Alignment:
Q  108 ttgcgagccttctctcagaacattacaactttgacctcact 148  Q
    |||||||||||||| || |||||||||||||| ||||||||    
T  28935388 ttgcgagccttctcccaaaacattacaactttaacctcact 28935348  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 161
Target Start/End: Original strand, 1036570 - 1036670
Alignment:
Q  61 tcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagccttctctcagaacattacaactttgacctcacttatttgttccaa 160  Q
    |||| ||||||||||| ||||||||||  ||| | || |||| ||| || ||||| ||||| || || |||||||||||||| || || |||||||||||    
T  1036570 tcacttcgctcaatctctccaaccaacctatcatccccgctactggcttacgagctttctcccaaaatattacaactttgacttctctcatttgttccaa 1036669  T
Q  161 c 161  Q
    |    
T  1036670 c 1036670  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 160
Target Start/End: Complemental strand, 7555280 - 7555196
Alignment:
Q  76 tttccaaccaactcatccttcctgctaatggtttgcgagccttctctcagaacattacaactttgacctcacttatttgttccaa 160  Q
    |||||||||||| || | | ||||| | ||| |||||||| ||||| || || ||||||||||| |||||||| | |||||||||    
T  7555280 tttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaa 7555196  T

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