View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1531_1D_low_9 (Length: 508)

Name: NF1531_1D_low_9
Description: NF1531_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1531_1D_low_9
NF1531_1D_low_9
[»] chr7 (2 HSPs)
chr7 (123-313)||(223975-224168)
chr7 (1-64)||(224199-224261)
[»] chr6 (7 HSPs)
chr6 (123-313)||(24607885-24608073)
chr6 (163-288)||(27576437-27576563)
chr6 (1-64)||(24607795-24607858)
chr6 (1-69)||(27576318-27576386)
chr6 (217-288)||(27534183-27534256)
chr6 (16-69)||(30123656-30123709)
chr6 (16-56)||(23070501-23070541)
[»] chr3 (6 HSPs)
chr3 (101-313)||(25373083-25373295)
chr3 (177-288)||(11468193-11468306)
chr3 (233-288)||(53489418-53489473)
chr3 (1-56)||(54575145-54575200)
chr3 (16-69)||(2614527-2614580)
chr3 (16-69)||(6935608-6935661)
[»] chr5 (5 HSPs)
chr5 (101-221)||(31067553-31067673)
chr5 (5-64)||(31067489-31067548)
chr5 (16-69)||(4931282-4931335)
chr5 (16-69)||(35192773-35192826)
chr5 (252-288)||(31067681-31067717)
[»] chr2 (7 HSPs)
chr2 (88-312)||(29732874-29733090)
chr2 (11-66)||(29732829-29732884)
chr2 (259-313)||(38563005-38563059)
chr2 (16-56)||(3399993-3400033)
chr2 (237-312)||(17394781-17394857)
chr2 (16-56)||(41213450-41213490)
chr2 (16-56)||(45155766-45155806)
[»] scaffold0090 (1 HSPs)
scaffold0090 (233-313)||(50922-51002)
[»] chr4 (1 HSPs)
chr4 (16-56)||(45560216-45560256)


Alignment Details
Target: chr7 (Bit Score: 99; Significance: 1e-48; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 123 - 313
Target Start/End: Complemental strand, 224168 - 223975
Alignment:
Q  123 aaccttctgcgttgttattttctttaatttatactaagacaaaataataaagtttataatgttttttctataaaatgattataatgttcgttattagaac 222  Q
    |||||||| ||||||||||||||||| ||||||||  | ||||| |||||||||||||||||| |||||| | |||||||||||||||||||||||||||    
T  224168 aaccttctacgttgttattttctttagtttatacttgggcaaaaaaataaagtttataatgttatttctagagaatgattataatgttcgttattagaac 224069  T
Q  223 tttgttattttat--gataagtatgagcacaaaactagaagaagtgatctaacaaaaataagaagaaa-taaatttatattgtatttttatttg 313  Q
     ||||||||||||  || ||||||| ||| |||||| ||||||||| |||||||||||||||||||||  ||| |||||||||  |||||||||    
T  224068 attgttattttatacgacaagtatgggcaaaaaacttgaagaagtgctctaacaaaaataagaagaaagaaaagttatattgtggttttatttg 223975  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 224261 - 224199
Alignment:
Q  1 taagaaattgtcatcattgtaactaacacaaaaatgatcaatattgtaatcaataaaattaaca 64  Q
    ||||||||  |||||||||||||||||| |||| | ||||||||||||||||||||||||||||    
T  224261 taagaaatgatcatcattgtaactaacataaaa-taatcaatattgtaatcaataaaattaaca 224199  T

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Target: chr6 (Bit Score: 88; Significance: 4e-42; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 123 - 313
Target Start/End: Original strand, 24607885 - 24608073
Alignment:
Q  123 aaccttctgcgttgttattttctttaatttatactaagacaaaataataaagtttataatgttttttctataaaatgattataatgttcgttattagaac 222  Q
    |||||||| ||||||||||||||||| ||||||||  | ||||| |||||||||||||||||| ||| || | |||||||||||||||||||||||||||    
T  24607885 aaccttctacgttgttattttctttagtttatactttggcaaaaaaataaagtttataatgttatttttagagaatgattataatgttcgttattagaac 24607984  T
Q  223 tttgttattttatgataagtatgagcacaaaactagaagaagtgatctaacaaaaataagaagaaataaatttatattgtatttttatttg 313  Q
     ||||  || || || ||||||| ||| |||||| ||||||||| ||||||||||||||||||||| ||| ||||||| |  |||||||||    
T  24607985 attgt--ttatacgacaagtatgggcaaaaaacttgaagaagtgctctaacaaaaataagaagaaaaaaagttatattttggttttatttg 24608073  T

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Target: chr6; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 163 - 288
Target Start/End: Original strand, 27576437 - 27576563
Alignment:
Q  163 aaaataataaagtttataatgttttttctataaaatgattataatgttcgttattagaactttgttattttat--gataagtatgagcacaaaactagaa 260  Q
    |||| |||||||||||||||||||||| || | | |||||||||||||| ||| |||| ||||||||||||||  || |||||||  || |||| |||||    
T  27576437 aaaaaaataaagtttataatgtttttt-tagagattgattataatgttctttactagagctttgttattttatacgaaaagtatggacaaaaaattagaa 27576535  T
Q  261 gaagtgatctaacaaaaataagaagaaa 288  Q
    ||| || |||||||||||||||||||||    
T  27576536 gaaatgctctaacaaaaataagaagaaa 27576563  T

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Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 24607795 - 24607858
Alignment:
Q  1 taagaaattgtcatcattgtaactaacacaaaaatgatcaatattgtaatcaataaaattaaca 64  Q
    |||||||| ||||||||||||||||| ||  |||||||||||||||||||||||||||||||||    
T  24607795 taagaaatggtcatcattgtaactaatacggaaatgatcaatattgtaatcaataaaattaaca 24607858  T

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Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 27576318 - 27576386
Alignment:
Q  1 taagaaattgtcatcattgtaactaacacaaaaatgatcaatattgtaatcaataaaattaacatacaa 69  Q
    |||||||||||||||||||||||||| |||   | ||||||||| ||||||||||||||||||||||||    
T  27576318 taagaaattgtcatcattgtaactaatacatggaggatcaatatagtaatcaataaaattaacatacaa 27576386  T

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Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 217 - 288
Target Start/End: Original strand, 27534183 - 27534256
Alignment:
Q  217 tagaactttgttattttat--gataagtatgagcacaaaactagaagaagtgatctaacaaaaataagaagaaa 288  Q
    |||| ||||||||||||||  || |||||||  || |||| ||||||||||| |||||||||||||||||||||    
T  27534183 tagagctttgttattttatacgaaaagtatggacaaaaaattagaagaagtgctctaacaaaaataagaagaaa 27534256  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 30123656 - 30123709
Alignment:
Q  16 attgtaactaacacaaaaatgatcaatattgtaatcaataaaattaacatacaa 69  Q
    ||||||||||||||| ||| |||||||||| |||||||||| || || ||||||    
T  30123656 attgtaactaacacagaaaagatcaatattctaatcaataatataaaaatacaa 30123709  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 23070501 - 23070541
Alignment:
Q  16 attgtaactaacacaaaaatgatcaatattgtaatcaataa 56  Q
    ||||||||||||||| ||| |||||||||| ||||||||||    
T  23070501 attgtaactaacacataaaagatcaatattctaatcaataa 23070541  T

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Target: chr3 (Bit Score: 88; Significance: 4e-42; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 101 - 313
Target Start/End: Original strand, 25373083 - 25373295
Alignment:
Q  101 atttcaaacgaatatctctgttaaccttctgcgttgttattttctttaatttatactaagacaaaataataaagtttataatgttttttctataaaatga 200  Q
    |||| ||| |||||||| | | |||||||| ||||||||||||||||| |||||||| ||  |||| |||||||||||||||| | |||||| | |||||    
T  25373083 attttaaaggaatatctttatcaaccttctacgttgttattttctttagtttatacttaggaaaaa-aataaagtttataatgctatttctagagaatga 25373181  T
Q  201 ttataatgttcgttattagaactttgttattttat--gataagtatgagcacaaaactagaagaagtgatctaacaaaaataagaagaaataaatttata 298  Q
    |||||||||| ||||||||||| ||||||||||||  || ||||||| ||| |||||| ||||||||| ||||| ||||||||||||||| ||| |||||    
T  25373182 ttataatgttagttattagaacattgttattttataagacaagtatgggcaaaaaacttgaagaagtgctctaataaaaataagaagaaa-aaagttata 25373280  T
Q  299 ttgtatttttatttg 313  Q
    ||||  |||||||||    
T  25373281 ttgtggttttatttg 25373295  T

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Target: chr3; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 177 - 288
Target Start/End: Complemental strand, 11468306 - 11468193
Alignment:
Q  177 tataatgttttttctataaaatgattataatgttcgttattagaactttgttattt--tatgataagtatgagcacaaaactagaagaagtgatctaaca 274  Q
    ||||||||| |||||| | ||||||||||||||||||||||||||| |||||||||  || |||||||||  ||| |||||| ||||||||| |||||||    
T  11468306 tataatgttatttctagagaatgattataatgttcgttattagaacattgttatttgatacgataagtattggcaaaaaacttgaagaagtgctctaaca 11468207  T
Q  275 aaaataagaagaaa 288  Q
    ||||||||||||||    
T  11468206 aaaataagaagaaa 11468193  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 233 - 288
Target Start/End: Original strand, 53489418 - 53489473
Alignment:
Q  233 tatgataagtatgagcacaaaactagaagaagtgatctaacaaaaataagaagaaa 288  Q
    |||||||||||||||   |||| || |||||||| |||||||||||||||||||||    
T  53489418 tatgataagtatgaggcaaaaattataagaagtgctctaacaaaaataagaagaaa 53489473  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 54575145 - 54575200
Alignment:
Q  1 taagaaattgtcatcattgtaactaacacaaaaatgatcaatattgtaatcaataa 56  Q
    ||||||||| ||||||||||||||||||||||||  ||| ||||| |||| |||||    
T  54575145 taagaaattatcatcattgtaactaacacaaaaaatatccatattctaataaataa 54575200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 2614580 - 2614527
Alignment:
Q  16 attgtaactaacacaaaaatgatcaatattgtaatcaataaaattaacatacaa 69  Q
    |||||||||| ||||||||  ||||||||| ||||||||||||| || ||||||    
T  2614580 attgtaactatcacaaaaaatatcaatattttaatcaataaaataaaaatacaa 2614527  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 6935608 - 6935661
Alignment:
Q  16 attgtaactaacacaaaaatgatcaatattgtaatcaataaaattaacatacaa 69  Q
    ||||||||||||||| ||| |||||||||| |||||||||| || || ||||||    
T  6935608 attgtaactaacacataaaagatcaatattctaatcaataacataaaaatacaa 6935661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 6e-26; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 101 - 221
Target Start/End: Original strand, 31067553 - 31067673
Alignment:
Q  101 atttcaaacgaatatctctgttaaccttctgcgttgttattttctttaatttatactaagacaaaataataaagtttataatgttttttctataaaatga 200  Q
    |||||||| |||||||| | | ||| ||||  |||||||||||||||| |||||||| || ||||| |||||||||||||||||| ||| || | |||||    
T  31067553 atttcaaaggaatatctttatcaactttctaagttgttattttctttagtttatacttaggcaaaaaaataaagtttataatgttatttttagagaatga 31067652  T
Q  201 ttataatgttcgttattagaa 221  Q
    |||||||||||||||||||||    
T  31067653 ttataatgttcgttattagaa 31067673  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 5 - 64
Target Start/End: Original strand, 31067489 - 31067548
Alignment:
Q  5 aaattgtcatcattgtaactaacacaaaaatgatcaatattgtaatcaataaaattaaca 64  Q
    |||| ||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||    
T  31067489 aaatggtcatcattataactaacacagaaatgatcaatattgtaatcaatacaattaaca 31067548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 69
Target Start/End: Original strand, 4931282 - 4931335
Alignment:
Q  16 attgtaactaacacaaaaatgatcaatattgtaatcaataaaattaacatacaa 69  Q
    ||||||| ||||||| ||| |||||||||| ||||||||||||| || ||||||    
T  4931282 attgtaattaacacataaaagatcaatattctaatcaataaaataaaaatacaa 4931335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 35192826 - 35192773
Alignment:
Q  16 attgtaactaacacaaaaatgatcaatattgtaatcaataaaattaacatacaa 69  Q
    |||||||||||||||||||  ||||||||| |||||||||| || || ||||||    
T  35192826 attgtaactaacacaaaaaatatcaatattctaatcaataatataaaaatacaa 35192773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 252 - 288
Target Start/End: Original strand, 31067681 - 31067717
Alignment:
Q  252 aaactagaagaagtgatctaacaaaaataagaagaaa 288  Q
    ||||| ||||||||| |||||||||||||||||||||    
T  31067681 aaacttgaagaagtgctctaacaaaaataagaagaaa 31067717  T

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Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 88 - 312
Target Start/End: Original strand, 29732874 - 29733090
Alignment:
Q  88 aaattaacatacaatttcaaacgaatatctctgttaaccttctgcgttgttattttctttaatttatactaagacaaaataataaagtttataatgtttt 187  Q
    |||||||||||  |||| || ||||||||| | | ||| |||| ||||||||||||||||| |||||||  ||  |||| |||||||||||||           
T  29732874 aaattaacata--attttaatcgaatatctttatcaactttctacgttgttattttctttagtttatacggaggaaaaaaaataaagtttata------- 29732964  T
Q  188 ttctataaaatgattataatgttcgttattagaactttgttattt--tatgataagtatgagcacaaaactagaagaagtgatctaacaaaaataagaag 285  Q
    | ||| | |||||||||||||||| |||||| |||||||||||||  ||  ||||||||| ||| ||||||||||| |||| ||||||||||| | |||     
T  29732965 tcctagagaatgattataatgttcattattaaaactttgttatttgatacaataagtatgggcaaaaaactagaagcagtgctctaacaaaaagaggaa- 29733063  T
Q  286 aaataaatttatattgtatttttattt 312  Q
    ||| ||| ||||||||| |||||||||    
T  29733064 aaacaaagttatattgtgtttttattt 29733090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 11 - 66
Target Start/End: Original strand, 29732829 - 29732884
Alignment:
Q  11 tcatcattgtaactaacacaaaaatgatcaatattgtaatcaataaaattaacata 66  Q
    |||||||||||||||||||  | | |||||||||||||||||||||||||||||||    
T  29732829 tcatcattgtaactaacacggagaggatcaatattgtaatcaataaaattaacata 29732884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 259 - 313
Target Start/End: Complemental strand, 38563059 - 38563005
Alignment:
Q  259 aagaagtgatctaacaaaaataagaagaaataaatttatattgtatttttatttg 313  Q
    ||||| || ||||||||||||||| ||| ||||| ||||||||||||||||||||    
T  38563059 aagaaatgctctaacaaaaataaggagatataaagttatattgtatttttatttg 38563005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 3400033 - 3399993
Alignment:
Q  16 attgtaactaacacaaaaatgatcaatattgtaatcaataa 56  Q
    ||||||||||||||| ||| |||||||||| ||||||||||    
T  3400033 attgtaactaacacataaaagatcaatattctaatcaataa 3399993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 237 - 312
Target Start/End: Complemental strand, 17394857 - 17394781
Alignment:
Q  237 ataagtatgagcacaaaactagaagaagtgatctaacaaaaataagaag-aaataaatttatattgtatttttattt 312  Q
    |||||||||||   |||| || |||||||| ||||||||||| |||||| ||| ||| |||| ||||||||||||||    
T  17394857 ataagtatgagttgaaaattacaagaagtgctctaacaaaaagaagaagaaaaaaaaattatgttgtatttttattt 17394781  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 41213450 - 41213490
Alignment:
Q  16 attgtaactaacacaaaaatgatcaatattgtaatcaataa 56  Q
    ||||||||||||||| ||| |||||||||| ||||||||||    
T  41213450 attgtaactaacacataaaagatcaatattctaatcaataa 41213490  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 45155766 - 45155806
Alignment:
Q  16 attgtaactaacacaaaaatgatcaatattgtaatcaataa 56  Q
    ||||||||||||||| ||| |||||||||| ||||||||||    
T  45155766 attgtaactaacacataaaagatcaatattctaatcaataa 45155806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 233 - 313
Target Start/End: Original strand, 50922 - 51002
Alignment:
Q  233 tatgataagtatgagcacaaaactagaagaagtgatctaacaaaaataagaagaaataaatttatattgtatttttatttg 313  Q
    ||||||||||||||||  |||| || |||||||| ||||| ||||||||||||||| ||  ||||||| | ||||||||||    
T  50922 tatgataagtatgagccaaaaattataagaagtgttctaaaaaaaataagaagaaaaaatattatattttgtttttatttg 51002  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 45560216 - 45560256
Alignment:
Q  16 attgtaactaacacaaaaatgatcaatattgtaatcaataa 56  Q
    ||||||||||||||| ||| |||||||||| ||||||||||    
T  45560216 attgtaactaacacataaaagatcaatattctaatcaataa 45560256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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