View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1531_2D_low_1 (Length: 495)

Name: NF1531_2D_low_1
Description: NF1531_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1531_2D_low_1
NF1531_2D_low_1
[»] chr3 (5 HSPs)
chr3 (1-475)||(1656893-1657364)
chr3 (2-203)||(51113768-51113966)
chr3 (19-202)||(51764444-51764624)
chr3 (97-203)||(514807-514913)
chr3 (19-73)||(51120897-51120951)
[»] chr8 (7 HSPs)
chr8 (1-379)||(28246281-28246654)
chr8 (19-73)||(21235599-21235653)
chr8 (4-129)||(18315262-18315384)
chr8 (23-89)||(34936171-34936237)
chr8 (19-66)||(27922556-27922603)
chr8 (19-77)||(17636405-17636463)
chr8 (19-129)||(32151289-32151396)
[»] chr6 (10 HSPs)
chr6 (1-342)||(11936261-11936599)
chr6 (1-342)||(11948241-11948579)
chr6 (4-89)||(6423242-6423327)
chr6 (17-73)||(12102307-12102363)
chr6 (22-203)||(6415880-6416058)
chr6 (17-65)||(9411404-9411452)
chr6 (19-73)||(6432202-6432256)
chr6 (19-77)||(28935086-28935144)
chr6 (159-212)||(28934954-28935007)
chr6 (39-95)||(10579760-10579816)
[»] chr4 (20 HSPs)
chr4 (1-456)||(644504-644943)
chr4 (4-73)||(553520-553589)
chr4 (19-89)||(8184034-8184104)
chr4 (162-221)||(12121601-12121660)
chr4 (19-77)||(1600456-1600514)
chr4 (4-73)||(1545814-1545883)
chr4 (17-73)||(570392-570448)
chr4 (19-66)||(1513411-1513458)
chr4 (19-78)||(8187095-8187154)
chr4 (19-73)||(1519146-1519200)
chr4 (19-59)||(1548428-1548468)
chr4 (149-212)||(553384-553447)
chr4 (19-66)||(1489365-1489412)
chr4 (162-221)||(1513548-1513607)
chr4 (19-66)||(1537771-1537818)
chr4 (19-66)||(12121461-12121508)
chr4 (21-59)||(21834384-21834422)
chr4 (349-377)||(546594-546622)
chr4 (19-129)||(1524490-1524597)
chr4 (19-87)||(53761776-53761844)
[»] chr2 (2 HSPs)
chr2 (313-475)||(31333325-31333487)
chr2 (313-475)||(31340055-31340217)
[»] chr5 (4 HSPs)
chr5 (22-73)||(41901542-41901593)
chr5 (21-73)||(38267562-38267614)
chr5 (19-73)||(41889558-41889612)
chr5 (19-59)||(32267530-32267570)


Alignment Details
Target: chr3 (Bit Score: 433; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 1 - 475
Target Start/End: Complemental strand, 1657364 - 1656893
Alignment:
Q  1 gactgaagctacgtacattgaactttgaagttcccaaactggaggtgttggacttgtcatttacaagagttgacgatatatcactctattggatcgtctc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||   ||    
T  1657364 gactgaagctacgtacattgaactttgaagttcccaaactggaggtgttggacttgtcatttacaagagttgacaatatatcactctattggatc---tc 1657268  T
Q  101 aaagagttgcagcgggcttttgcaactgtcacttaaattttgtgaaggtgtcgcagacaaaggagtgacgcatgtggttgaaaaatgcacacaactgaga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1657267 aaagagttgcagcgggcttttgcaactgtcacttaaattttgtgaaggtgttgcagacaaaggagtgacgcatgtggttgaaaaatgcacacaactgaga 1657168  T
Q  201 gaggtcgatttgaagtattgtgatgaggtgctaataagtcgttgcctcgcagctcggtatcgtttttaatctcaaagagtggagactcttatcacgtcaa 300  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  1657167 gaggtcgatttgaagtactgtgatgaggtgctaataagtcgttgcctcgcagctcgatatcgtttttaatctcaaagagcggagactcttatcacgtcaa 1657068  T
Q  301 ggatgtcttgtttgctatgaagtttgaattgtgaatttataatggtttttgttttcagatttacttctatgagaaattacttttgttttctttctgaacg 400  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1657067 ggatgtcttgtttgctatgaagtttgaattgtgaatttataatgttttttgttttcagatttacttctatgagaaattacttttgttttctttctgaacg 1656968  T
Q  401 taattgtatatatgctcatcatgttacgtgcgcatgacaaatgaataagttattaagctattgattgtggagtgc 475  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1656967 taattgtatatatgctcatcatgttatgtgcgcatgacaaatgaataagttattaagctattgattgtggagtgc 1656893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 2 - 203
Target Start/End: Original strand, 51113768 - 51113966
Alignment:
Q  2 actgaagctacgtacattgaactttgaagttcccaaactggaggtgttggacttgtcatttacaagagttgacgatatatcactctattggatcgtctca 101  Q
    ||||||||||| |  | |||||||||||| |||||||||||||||||| |||||||||  |||||  ||||| |||  | ||||||||  ||   ||||     
T  51113768 actgaagctacttggaatgaactttgaagctcccaaactggaggtgttagacttgtcaaatacaatggttgatgatgaaacactctatgtga---tctcg 51113864  T
Q  102 aagagttgcagcgggcttttgcaactgtcacttaaattttgtgaaggtgtcgcagacaaaggagtgacgcatgtggttgaaaaatgcacacaactgagag 201  Q
    ||||||||  | |||||||||||||||| ||| |||  |||| |   |||| |||| || ||||||| ||||||||| |||||||||||| |||| ||||    
T  51113865 aagagttgttgtgggcttttgcaactgttactgaaaaattgttaccatgtcacagagaagggagtgaagcatgtggtagaaaaatgcacaaaactaagag 51113964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 19 - 202
Target Start/End: Original strand, 51764444 - 51764624
Alignment:
Q  19 tgaactttgaagttcccaaactggaggtgttggacttgtcatttacaagagttgacgatatatcactctattggatcgtctcaaagagttgcagcgggct 118  Q
    ||||||||| |||||| || ||||||||||| |||||||||||||||| |||||| |||| | ||||||||  ||   ||||||||| |||  |||||||    
T  51764444 tgaactttgcagttccgaagctggaggtgttagacttgtcatttacaaaagttgatgataaaacactctatgcga---tctcaaagaattgttgcgggct 51764540  T
Q  119 tttgcaactgtcacttaaattttgtgaaggtgtcgcagacaaaggagtgacgcatgtggttgaaaaatgcacacaactgagaga 202  Q
    ||||||||| | |||  ||  ||||||   ||||   || || |||||||  |||||||||||||| ||||||||| |||||||    
T  51764541 tttgcaactattactggaacattgtgataatgtcaaggagaagggagtgaaacatgtggttgaaaactgcacacaattgagaga 51764624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 97 - 203
Target Start/End: Original strand, 514807 - 514913
Alignment:
Q  97 tctcaaagagttgcagcgggcttttgcaactgtcacttaaattttgtgaaggtgtcgcagacaaaggagtgacgcatgtggttgaaaaatgcacacaact 196  Q
    |||| ||||||||| | |||||||||||||| | |||  ||  |||||||||| || |||| |  ||||||| |||||||||  |||| ||||||| |||    
T  514807 tctcgaagagttgctgtgggcttttgcaactattactgcaaaattgtgaaggtatcacagagacgggagtgaagcatgtggtgaaaaactgcacacgact 514906  T
Q  197 gagagag 203  Q
    |||||||    
T  514907 gagagag 514913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 51120897 - 51120951
Alignment:
Q  19 tgaactttgaagttcccaaactggaggtgttggacttgtcatttacaagagttga 73  Q
    ||||||||||||||| |||| ||||||||||| |||||||   ||||||||||||    
T  51120897 tgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttga 51120951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 310; Significance: 1e-174; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 28246281 - 28246654
Alignment:
Q  1 gactgaagctacgtacattgaactttgaagttcccaaactggaggtgttggacttgtcatttacaagagttgacgatatatcactctattggatcgtctc 100  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||   ||    
T  28246281 gactgaagctacatacattgaactttgaagttcccaaactggaggtgttggacttgtcatttacaagagttga--ataaatcactctattggatc---tc 28246375  T
Q  101 aaagagttgcagcgggcttttgcaactgtcacttaaattttgtgaaggtgtcgcagacaaaggagtgacgcatgtggttgaaaaatgcacacaactgaga 200  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  28246376 aaagagttgtagcgggcttttgcaactgtcacttaaattttgtgaaggtgtcacagacaaatgagtgacgcatgtggttgaaaaatgcacacaactgaga 28246475  T
Q  201 gaggtcgatttgaagtattgtgatgaggtgctaataagtcgttgcctcgcagctcggtatcgtttttaatctcaaagagtggagactcttatcacgtcaa 300  Q
    |||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||    
T  28246476 gaggtcaatttgaagtactgtgataaggtgctaataagtcgttgcctcgcagctcggtatcgtttttaatctcaaagagcggagactcttatcacatcaa 28246575  T
Q  301 ggatgtcttgtttgctatgaagtttgaattgtgaatttataatggtttttgttttcagatttacttctatgagaaatta 379  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  28246576 ggatgtcttgtttgctatgaagtttgaattgtgaatttataatgttttttgttttcagatttacttctatgagaaatta 28246654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 21235653 - 21235599
Alignment:
Q  19 tgaactttgaagttcccaaactggaggtgttggacttgtcatttacaagagttga 73  Q
    |||||||||||||||||||||||||||||||| ||||||||| |||| |||||||    
T  21235653 tgaactttgaagttcccaaactggaggtgttgaacttgtcatatacaggagttga 21235599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 4 - 129
Target Start/End: Original strand, 18315262 - 18315384
Alignment:
Q  4 tgaagctacgtacattgaactttgaagttcccaaactggaggtgttggacttgtcatttacaagagttgacgatatatcactctattggatcgtctcaaa 103  Q
    |||||||||||  | |||||||| ||||||||||||||||||||||| ||||||||  ||||| |||||| |||  | ||||||||  ||   |||||||    
T  18315262 tgaagctacgtggaatgaactttaaagttcccaaactggaggtgttgaacttgtcacatacaaaagttgatgatgaagcactctatgtga---tctcaaa 18315358  T
Q  104 gagttgcagcgggcttttgcaactgt 129  Q
    ||||||  |  |||||||||||||||    
T  18315359 gagttgtcgtaggcttttgcaactgt 18315384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 23 - 89
Target Start/End: Original strand, 34936171 - 34936237
Alignment:
Q  23 ctttgaagttcccaaactggaggtgttggacttgtcatttacaagagttgacgatatatcactctat 89  Q
    |||||| ||||| ||||| ||||||||||||||||||| |||||||||||| |||| | ||||||||    
T  34936171 ctttgatgttccaaaactagaggtgttggacttgtcatatacaagagttgatgataaaacactctat 34936237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 27922603 - 27922556
Alignment:
Q  19 tgaactttgaagttcccaaactggaggtgttggacttgtcatttacaa 66  Q
    |||||||||||||||||||| ||||||||||| ||||||||| |||||    
T  27922603 tgaactttgaagttcccaaattggaggtgttgaacttgtcatatacaa 27922556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 17636405 - 17636463
Alignment:
Q  19 tgaactttgaagttcccaaactggaggtgttggacttgtcatttacaagagttgacgat 77  Q
    |||||||||||||||||||| ||||||||||| ||||||||   ||| |||||||||||    
T  17636405 tgaactttgaagttcccaaattggaggtgttgaacttgtcacaaacaggagttgacgat 17636463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 32151396 - 32151289
Alignment:
Q  19 tgaactttgaagttcccaaactggaggtgttggacttgtcatttacaagagttgacgatatatcactctattggatcgtctcaaagagttgcagcgggct 118  Q
    ||||||| |||||| |||| |||||||||||  ||||||||| ||||||  |||| |||  | ||||||||  ||   ||||||||||||| || |||||    
T  32151396 tgaacttcgaagtttccaatctggaggtgttaaacttgtcatgtacaaggtttgatgatgaaacactctatgtga---tctcaaagagttgtagtgggct 32151300  T
Q  119 tttgcaactgt 129  Q
    |||||||||||    
T  32151299 tttgcaactgt 32151289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 296; Significance: 1e-166; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 11936261 - 11936599
Alignment:
Q  1 gactgaagctacgtacattgaactttgaagttcccaaactggaggtgttggacttgtcatttacaagagttgacgatatatcactctattggatcgtctc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||   ||    
T  11936261 gactgaagctacgtacattgaactttgaagttcccaaactggaggtgttggacttgtcatttacaagagttgacgataaatcactctattggatc---tc 11936357  T
Q  101 aaagagttgcagcgggcttttgcaactgtcacttaaattttgtgaaggtgtcgcagacaaaggagtgacgcatgtggttgaaaaatgcacacaactgaga 200  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  11936358 aaagagttgtagtgggcttttgcaactgtcacttaaattttgtgaaggtgtcacagacaaaggagtgacgcatgtggttgaaaaatgcacacaaatgaga 11936457  T
Q  201 gaggtcgatttgaagtattgtgatgaggtgctaataagtcgttgcctcgcagctcggtatcgtttttaatctcaaagagtggagactcttatcacgtcaa 300  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  11936458 gaggtcgatttgaagtactgtgataaggtgctaataagtcgttgcctcgcagctcggtatcgtttttaatctcaaagagcggagactcttatcacgtcaa 11936557  T
Q  301 ggatgtcttgtttgctatgaagtttgaattgtgaatttataa 342  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  11936558 ggatgtcttgtttgctatgaagtttgaattgtgaatttataa 11936599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 11948241 - 11948579
Alignment:
Q  1 gactgaagctacgtacattgaactttgaagttcccaaactggaggtgttggacttgtcatttacaagagttgacgatatatcactctattggatcgtctc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||   ||    
T  11948241 gactgaagctacgtacattgaactttgaagttcccaaactggaggtgttggacttgtcatttacaagagttgacgataaatcactctattggatc---tc 11948337  T
Q  101 aaagagttgcagcgggcttttgcaactgtcacttaaattttgtgaaggtgtcgcagacaaaggagtgacgcatgtggttgaaaaatgcacacaactgaga 200  Q
    ||||||||| || ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  11948338 aaagagttgtagtgggcttttgcaactgtcacttaaattttgtgaaggtgtcacagacaaaggagtgacgcatgtggttgaaaaatgcacacaaatgaga 11948437  T
Q  201 gaggtcgatttgaagtattgtgatgaggtgctaataagtcgttgcctcgcagctcggtatcgtttttaatctcaaagagtggagactcttatcacgtcaa 300  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  11948438 gaggtcgatttgaagtactgtgataaggtgctaataagtcgttgcctcgcagctcggtatcgtttttaatctcaaagagcggagactcttatcacgtcaa 11948537  T
Q  301 ggatgtcttgtttgctatgaagtttgaattgtgaatttataa 342  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  11948538 ggatgtcttgtttgctatgaagtttgaattgtgaatttataa 11948579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 4 - 89
Target Start/End: Complemental strand, 6423327 - 6423242
Alignment:
Q  4 tgaagctacgtacattgaactttgaagttcccaaactggaggtgttggacttgtcatttacaagagttgacgatatatcactctat 89  Q
    ||||||||||| || |||||||| |||||||||| |||||||||||| ||||||||  ||||||||||  ||||| | ||||||||    
T  6423327 tgaagctacgtgcaatgaacttttaagttcccaagctggaggtgttgaacttgtcaaatacaagagttagcgataaaacactctat 6423242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 12102363 - 12102307
Alignment:
Q  17 attgaactttgaagttcccaaactggaggtgttggacttgtcatttacaagagttga 73  Q
    |||||||||||||||||||||||||||||||||| ||||||||  |||| |||||||    
T  12102363 attgaactttgaagttcccaaactggaggtgttgaacttgtcacatacatgagttga 12102307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 22 - 203
Target Start/End: Complemental strand, 6416058 - 6415880
Alignment:
Q  22 actttgaagttcccaaactggaggtgttggacttgtcatttacaagagttgacgatatatcactctattggatcgtctcaaagagttgcagcgggctttt 121  Q
    |||||| ||||||||| |||||||||||| ||||||||  |||||  ||| | |||| | | ||||||  ||||   ||||||| ||| |||||||||||    
T  6416058 actttgtagttcccaacctggaggtgttgaacttgtcaaatacaaaggttaatgataaaactctctatgtgatc---tcaaagaattgtagcgggctttt 6415962  T
Q  122 gcaactgtcacttaaattttgtgaaggtgtcgcagacaaaggagtgacgcatgtggttgaaaaatgcacacaactgagagag 203  Q
    |||||| | |||| ||||||||||   |||| ||||    |||||||  |||||||| || || ||||||||||| ||||||    
T  6415961 gcaactattacttgaattttgtgataatgtcacagaagtgggagtgaaacatgtggtagagaactgcacacaactaagagag 6415880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 9411452 - 9411404
Alignment:
Q  17 attgaactttgaagttcccaaactggaggtgttggacttgtcatttaca 65  Q
    |||||||||||| |||||||| |||||||||||| ||||||||| ||||    
T  9411452 attgaactttgaggttcccaagctggaggtgttgaacttgtcatataca 9411404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 6432256 - 6432202
Alignment:
Q  19 tgaactttgaagttcccaaactggaggtgttggacttgtcatttacaagagttga 73  Q
    ||||||||||||||||||| ||| |||||||| ||||||||  |||||| |||||    
T  6432256 tgaactttgaagttcccaagctgaaggtgttgaacttgtcaaatacaagcgttga 6432202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 28935144 - 28935086
Alignment:
Q  19 tgaactttgaagttcccaaactggaggtgttggacttgtcatttacaagagttgacgat 77  Q
    |||| ||||| |||||| |||| ||||||||| ||||||||  ||||||||||||||||    
T  28935144 tgaagtttgatgttccccaactcgaggtgttgaacttgtcacatacaagagttgacgat 28935086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 212
Target Start/End: Complemental strand, 28935007 - 28934954
Alignment:
Q  159 aaaggagtgacgcatgtggttgaaaaatgcacacaactgagagaggtcgatttg 212  Q
    |||||||||| ||||||||| ||||| ||||||||||| |||||| || |||||    
T  28935007 aaaggagtgaagcatgtggtagaaaattgcacacaactaagagagatctatttg 28934954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 39 - 95
Target Start/End: Original strand, 10579760 - 10579816
Alignment:
Q  39 ctggaggtgttggacttgtcatttacaagagttgacgatatatcactctattggatc 95  Q
    |||||||||||| ||||||||| ||||| |||||| |||| | ||||||||| ||||    
T  10579760 ctggaggtgttgaacttgtcatatacaaaagttgatgataaaacactctattcgatc 10579816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 456
Target Start/End: Complemental strand, 644943 - 644504
Alignment:
Q  1 gactgaagctacgtacattgaactttgaagttcccaaactggaggtgttggacttgtcatttacaagagttgacgatatatcactctattggatcgtctc 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||| | |||| ||||   ||    
T  644943 gactgaagctacttacattgaactttgaagttcccaaactggaggtgttagacttgtcatttacaagagtttacgataaatcatt-tatttgatc---tc 644848  T
Q  101 aaagagttgcagcgggcttttgcaactgtcacttaaattttgtgaaggtgtcgcagacaaaggagtgacgcatgtggttgaaaaatgcacacaactgaga 200  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||| | || ||||||||||  ||||||||||||||||||||||||||||||    
T  644847 aaagagttgcagcgggcttgtgcaactgtcacttaaattttgtgaaggtgtcacggagaaaggagtgaaacatgtggttgaaaaatgcacacaactgaga 644748  T
Q  201 gaggtcgatttgaagtattgtgatgaggtgctaataagtcgttgcctcgcagctcggtatcgtttttaatctcaaagagtggagactcttatcacgtcaa 300  Q
    ||| ||||||||||||| ||||||           |||||||||||| ||| |||||||||||||| |||||||||||| |||||||||||||||| |||    
T  644747 gagatcgatttgaagtactgtgat-----------aagtcgttgcctagcaactcggtatcgtttt-aatctcaaagagcggagactcttatcacggcaa 644660  T
Q  301 ggatgtcttgtttgctatgaagtttgaattgtgaatttataatggtttttgttttcagatttacttctatgagaaattacttttgttttctttctgaacg 400  Q
    |||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||| ||||| | ||||    
T  644659 ggatgtcttgtttgctatgaagtttgaattgtgaatttctaatgtttttggttttcagatttacttctatgagaaattacttttgttctcttttttaacg 644560  T
Q  401 taattgtatatatgctcatcatgttacgtgcgcatgacaaatgaataagttattaa 456  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||    
T  644559 taattgtatatatgctcatcatgttatgtgtgcatgacaaatgaataagttattaa 644504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 553589 - 553520
Alignment:
Q  4 tgaagctacgtacattgaactttgaagttcccaaactggaggtgttggacttgtcatttacaagagttga 73  Q
    ||||| ||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||    
T  553589 tgaagttacgtacattgaactttaaagttctcaaactggaggtgttgaacttgtcatttacaagagttga 553520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 89
Target Start/End: Original strand, 8184034 - 8184104
Alignment:
Q  19 tgaactttgaagttcccaaactggaggtgttggacttgtcatttacaagagttgacgatatatcactctat 89  Q
    |||||||||||||||| ||||| ||||||||| ||||||||  |||||||||||| |||||| ||||||||    
T  8184034 tgaactttgaagttccgaaactagaggtgttgaacttgtcacatacaagagttgatgatatagcactctat 8184104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 162 - 221
Target Start/End: Original strand, 12121601 - 12121660
Alignment:
Q  162 ggagtgacgcatgtggttgaaaaatgcacacaactgagagaggtcgatttgaagtattgt 221  Q
    ||||||| ||||||||| ||||||||||||||||| |||||| |||||||||| ||||||    
T  12121601 ggagtgaagcatgtggtagaaaaatgcacacaactaagagagatcgatttgaaatattgt 12121660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 1600514 - 1600456
Alignment:
Q  19 tgaactttgaagttcccaaactggaggtgttggacttgtcatttacaagagttgacgat 77  Q
    |||||||||||||||  ||||||||||||||| ||||||||| |||||| |||||||||    
T  1600514 tgaactttgaagttcttaaactggaggtgttgaacttgtcatatacaagggttgacgat 1600456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 4 - 73
Target Start/End: Complemental strand, 1545883 - 1545814
Alignment:
Q  4 tgaagctacgtacattgaactttgaagttcccaaactggaggtgttggacttgtcatttacaagagttga 73  Q
    |||||||| ||| | |||||||| ||||||| ||||||||||||||| ||||||  ||||||||||||||    
T  1545883 tgaagctatgtaaaatgaactttaaagttcctaaactggaggtgttgaacttgttgtttacaagagttga 1545814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 570448 - 570392
Alignment:
Q  17 attgaactttgaagttcccaaactggaggtgttggacttgtcatttacaagagttga 73  Q
    ||||||||||||||||| |||||| ||||||||| ||||||||| |||| |||||||    
T  570448 attgaactttgaagttctcaaactcgaggtgttgaacttgtcatatacaggagttga 570392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 1513411 - 1513458
Alignment:
Q  19 tgaactttgaagttcccaaactggaggtgttggacttgtcatttacaa 66  Q
    |||||||||||||||||||||| || |||||| |||||||||||||||    
T  1513411 tgaactttgaagttcccaaactagaagtgttgaacttgtcatttacaa 1513458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 8187095 - 8187154
Alignment:
Q  19 tgaactttgaagttcccaaactggaggtgttggacttgtcatttacaagagttgacgata 78  Q
    ||||||||||| || ||||||||||||||||| ||||||||  |||||||||||| ||||    
T  8187095 tgaactttgaaatttccaaactggaggtgttgaacttgtcacatacaagagttgatgata 8187154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 1519146 - 1519200
Alignment:
Q  19 tgaactttgaagttcccaaactggaggtgttggacttgtcatttacaagagttga 73  Q
    |||||||||||||||||||||| ||||||||| ||||||||  |||||| |||||    
T  1519146 tgaactttgaagttcccaaactagaggtgttgaacttgtcacatacaagggttga 1519200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 1548428 - 1548468
Alignment:
Q  19 tgaactttgaagttcccaaactggaggtgttggacttgtca 59  Q
    ||||||||||| |||||||||||||||||||| ||||||||    
T  1548428 tgaactttgaaattcccaaactggaggtgttgaacttgtca 1548468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 212
Target Start/End: Complemental strand, 553447 - 553384
Alignment:
Q  149 tgtcgcagacaaaggagtgacgcatgtggttgaaaaatgcacacaactgagagaggtcgatttg 212  Q
    |||| |||| ||||||||||  |||||||| ||||| ||||||||||| |||||| ||||||||    
T  553447 tgtcacagataaaggagtgaatcatgtggtagaaaactgcacacaacttagagagatcgatttg 553384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 1489365 - 1489412
Alignment:
Q  19 tgaactttgaagttcccaaactggaggtgttggacttgtcatttacaa 66  Q
    |||||||||||||||||||||| || |||||| ||||||||| |||||    
T  1489365 tgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaa 1489412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 162 - 221
Target Start/End: Original strand, 1513548 - 1513607
Alignment:
Q  162 ggagtgacgcatgtggttgaaaaatgcacacaactgagagaggtcgatttgaagtattgt 221  Q
    ||||||| || |||| | |||||||||||||||||||||||| || ||||||| ||||||    
T  1513548 ggagtgaagcttgtgctagaaaaatgcacacaactgagagagatcaatttgaaatattgt 1513607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 1537771 - 1537818
Alignment:
Q  19 tgaactttgaagttcccaaactggaggtgttggacttgtcatttacaa 66  Q
    |||||||||||||||||||||| || |||||| ||||||||| |||||    
T  1537771 tgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaa 1537818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 12121461 - 12121508
Alignment:
Q  19 tgaactttgaagttcccaaactggaggtgttggacttgtcatttacaa 66  Q
    |||||||||||||||||||||| || |||||| ||||||||| |||||    
T  12121461 tgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaa 12121508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 21 - 59
Target Start/End: Original strand, 21834384 - 21834422
Alignment:
Q  21 aactttgaagttcccaaactggaggtgttggacttgtca 59  Q
    ||||||| ||||||||| |||||||||||||||||||||    
T  21834384 aactttgtagttcccaagctggaggtgttggacttgtca 21834422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 349 - 377
Target Start/End: Complemental strand, 546622 - 546594
Alignment:
Q  349 ttgttttcagatttacttctatgagaaat 377  Q
    |||||||||||||||||||||||||||||    
T  546622 ttgttttcagatttacttctatgagaaat 546594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 1524490 - 1524597
Alignment:
Q  19 tgaactttgaagttcccaaactggaggtgttggacttgtcatttacaagagttgacgatatatcactctattggatcgtctcaaagagttgcagcgggct 118  Q
    |||||||||||||||||||  ||||||||||| | ||||||  |||||| ||||| |||  | ||||||||   ||  ||||| |||||||  | |||||    
T  1524490 tgaactttgaagttcccaatttggaggtgttgaatttgtcacgtacaagtgttgatgatgaaacactctat---atgatctcacagagttgtcgtgggct 1524586  T
Q  119 tttgcaactgt 129  Q
    |||||||||||    
T  1524587 tttgcaactgt 1524597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 53761776 - 53761844
Alignment:
Q  19 tgaactttgaagttcccaaactggaggtgttggacttgtcatttacaagagttgacgatatatcactct 87  Q
    ||||||||| ||||||||| || |||| |||| ||||||||||||| | |||| |||||| | ||||||    
T  53761776 tgaactttgtagttcccaagctagaggcgttgaacttgtcatttacgaaagttaacgataaaacactct 53761844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 151; Significance: 1e-79; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 313 - 475
Target Start/End: Original strand, 31333325 - 31333487
Alignment:
Q  313 tgctatgaagtttgaattgtgaatttataatggtttttgttttcagatttacttctatgagaaattacttttgttttctttctgaacgtaattgtatata 412  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31333325 tgctatgaagtttgaattgtgaatttataatgttttttgttttcagatttacttctatgagaaattacttttgttttctttctgaacgtaattgtatata 31333424  T
Q  413 tgctcatcatgttacgtgcgcatgacaaatgaataagttattaagctattgattgtggagtgc 475  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  31333425 tgctcatcatgttatgtgagcatgacaaatgaataagttattaagctattgattgtggagtgc 31333487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 313 - 475
Target Start/End: Original strand, 31340055 - 31340217
Alignment:
Q  313 tgctatgaagtttgaattgtgaatttataatggtttttgttttcagatttacttctatgagaaattacttttgttttctttctgaacgtaattgtatata 412  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31340055 tgctatgaagtttgaattgtgaatttataatgttttttgttttcagatttacttctatgagaaattacttttgttttctttctgaacgtaattgtatata 31340154  T
Q  413 tgctcatcatgttacgtgcgcatgacaaatgaataagttattaagctattgattgtggagtgc 475  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  31340155 tgctcatcatgttatgtgtgcatgacaaatgaataagttattaagctattgattgtggagtgc 31340217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 22 - 73
Target Start/End: Original strand, 41901542 - 41901593
Alignment:
Q  22 actttgaagttcccaaactggaggtgttggacttgtcatttacaagagttga 73  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||| ||||||    
T  41901542 actttgaagttcccaaactggaggtgttgaacttgtcatatacaaaagttga 41901593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 38267562 - 38267614
Alignment:
Q  21 aactttgaagttcccaaactggaggtgttggacttgtcatttacaagagttga 73  Q
    ||||||||||||||||| || ||||||||||||||| ||  ||||||||||||    
T  38267562 aactttgaagttcccaaccttgaggtgttggacttgacacatacaagagttga 38267614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 41889558 - 41889612
Alignment:
Q  19 tgaactttgaagttcccaaactggaggtgttggacttgtcatttacaagagttga 73  Q
    |||||||| ||||||||||| ||||||||||| |||| |||| ||||| ||||||    
T  41889558 tgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttga 41889612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 32267570 - 32267530
Alignment:
Q  19 tgaactttgaagttcccaaactggaggtgttggacttgtca 59  Q
    |||||||||||||||||||| ||||||| ||| ||||||||    
T  32267570 tgaactttgaagttcccaaattggaggtattgaacttgtca 32267530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University