View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1531_2D_low_3 (Length: 306)
Name: NF1531_2D_low_3
Description: NF1531_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1531_2D_low_3 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 16 - 306
Target Start/End: Complemental strand, 36463196 - 36462906
Alignment:
| Q |
16 |
acatcacttccatcttcaagaaaacaacatcaaggaaggatccacaacaccagaaagtttggaaattttcttgacttaaaatccgagtatcaacccgaag |
115 |
Q |
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| T |
36463196 |
acatcacttccatcttcaagaaaacaacatcaaggaaggatccacaacaccagaaagtttggaaattttcttgacttaaaatccgagtatcaacccgaag |
36463097 |
T |
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| Q |
116 |
ccttggatttcgaccttccattgtttcacccttctgatcacacttgtttcaatgtgatcataatcggtgctggccccgcaggaattcgccttgcagaaca |
215 |
Q |
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| T |
36463096 |
ccttggatttcgaccttccattgtttcacccttctgatcacacttgtttcaatgtgatcataatcggtgctggccccgcaggaattcgccttgcagaaca |
36462997 |
T |
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| Q |
216 |
agtttccctttatggaatgaaggtttgttgtgttgatcctaaccctttgtctatctggcctaataactatggtgtttggtttgatgagttt |
306 |
Q |
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| T |
36462996 |
agtttccctttatggaatgaaggtttgttgtgttgatcctaaccctctgtctatctggcctaataactatggtgtttggtttgatgagttt |
36462906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 64 - 306
Target Start/End: Original strand, 36455417 - 36455659
Alignment:
| Q |
64 |
accagaaagtttggaaattttcttgacttaaaatccgagtatcaacccgaagccttggatttcgaccttccattgtttcacccttctgatcacacttgtt |
163 |
Q |
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| T |
36455417 |
accaaaaagtttggaaatttccttgacttaaaatccgagtatcaacccgaagccttagatttcgatcttccatggcaccacccttctgatcgttctcaat |
36455516 |
T |
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| Q |
164 |
tcaatgtgatcataatcggtgctggccccgcaggaattcgccttgcagaacaagtttccctttatggaatgaaggtttgttgtgttgatcctaacccttt |
263 |
Q |
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| T |
36455517 |
tcgacgtgatcatagtcggtgctggccctgcaggaattcgccttgcggaacaagtttccctttatggaatcaaggtttgttgtgttgatcctaaccctct |
36455616 |
T |
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| Q |
264 |
gtctatctggcctaataactatggtgtttggtttgatgagttt |
306 |
Q |
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| T |
36455617 |
atctatgtggccaaataactatggtgtgtggttggatgagttt |
36455659 |
T |
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