View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1531_2D_low_5 (Length: 256)

Name: NF1531_2D_low_5
Description: NF1531_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1531_2D_low_5
NF1531_2D_low_5
[»] chr3 (6 HSPs)
chr3 (15-256)||(31761997-31762238)
chr3 (222-256)||(46434750-46434784)
chr3 (227-256)||(19679463-19679492)
chr3 (219-256)||(19679865-19679902)
chr3 (220-253)||(43951696-43951729)
chr3 (224-256)||(37138242-37138274)
[»] chr1 (9 HSPs)
chr1 (214-256)||(48064179-48064221)
chr1 (223-255)||(35925584-35925616)
chr1 (221-256)||(11218103-11218138)
chr1 (224-256)||(1510100-1510132)
chr1 (224-256)||(4920908-4920940)
chr1 (224-256)||(34404932-34404964)
chr1 (224-256)||(34619520-34619552)
chr1 (224-256)||(38219825-38219857)
chr1 (212-256)||(46252840-46252884)
[»] chr8 (7 HSPs)
chr8 (224-256)||(31751714-31751746)
chr8 (216-256)||(44426545-44426585)
chr8 (222-256)||(6526382-6526416)
chr8 (222-256)||(8499085-8499119)
chr8 (222-256)||(31118866-31118900)
chr8 (216-256)||(31891791-31891831)
chr8 (224-256)||(37353406-37353438)
[»] chr7 (4 HSPs)
chr7 (216-256)||(46945767-46945807)
chr7 (226-256)||(32156891-32156921)
chr7 (224-256)||(25595986-25596018)
chr7 (224-256)||(31002960-31002992)
[»] chr5 (11 HSPs)
chr5 (224-256)||(5559610-5559642)
chr5 (224-255)||(11715018-11715049)
chr5 (211-252)||(8089666-8089707)
chr5 (216-256)||(1942943-1942983)
chr5 (224-256)||(6593180-6593212)
chr5 (224-256)||(12467070-12467102)
chr5 (224-256)||(29845055-29845087)
chr5 (224-256)||(30291141-30291173)
chr5 (224-256)||(32927977-32928009)
chr5 (224-256)||(38105021-38105053)
chr5 (224-256)||(42573937-42573969)
[»] chr4 (7 HSPs)
chr4 (224-256)||(19039661-19039693)
chr4 (224-256)||(54214895-54214927)
chr4 (222-256)||(11155555-11155589)
chr4 (225-255)||(47946110-47946140)
chr4 (224-256)||(2987069-2987101)
chr4 (224-256)||(47399414-47399446)
chr4 (224-256)||(50298411-50298443)
[»] chr2 (6 HSPs)
chr2 (219-255)||(39621859-39621895)
chr2 (224-256)||(12140446-12140478)
chr2 (224-256)||(28039474-28039506)
chr2 (224-256)||(40158644-40158676)
chr2 (224-256)||(41880660-41880692)
chr2 (216-256)||(42907244-42907284)
[»] chr6 (2 HSPs)
chr6 (226-256)||(769045-769075)
chr6 (224-256)||(20368330-20368362)
[»] scaffold0016 (1 HSPs)
scaffold0016 (210-242)||(36849-36881)


Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 15 - 256
Target Start/End: Original strand, 31761997 - 31762238
Alignment:
Q  15 atcaattctatacataatcacatttatcaaaagctcacccaaaaacactatcagaggaggtcagacagaaccaacaaaaattgtgatagttacatattgc 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31761997 atcaattctatacataatcacatttatcaaaagctcacccaaaaacactatcagaggaggtcagacagaaccaacaaaaattgtgatagttacatattgc 31762096  T
Q  115 attccaaatataactcaaaagaaactagtcaagcttttcaaattctactcaaatttacaaatcccannnnnnnncctttccctctaccacacactatata 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||| ||||||||||||||||||||    
T  31762097 attccaaatataactcaaaagaaactagtcaagcttttcaaattctactcaaatttacaaatcccattttttttccttttcctctaccacacactatata 31762196  T
Q  215 cttaggtcttgtttggataaacaacttaatttgcagcttata 256  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  31762197 cttaggtcttgtttggataaacaacttaatttgcagcttata 31762238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 256
Target Start/End: Complemental strand, 46434784 - 46434750
Alignment:
Q  222 cttgtttggataaacaacttaatttgcagcttata 256  Q
    ||||||||||||||||||||| |||||||||||||    
T  46434784 cttgtttggataaacaacttattttgcagcttata 46434750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 227 - 256
Target Start/End: Complemental strand, 19679492 - 19679463
Alignment:
Q  227 ttggataaacaacttaatttgcagcttata 256  Q
    ||||||||||||||||||||||||||||||    
T  19679492 ttggataaacaacttaatttgcagcttata 19679463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 219 - 256
Target Start/End: Complemental strand, 19679902 - 19679865
Alignment:
Q  219 ggtcttgtttggataaacaacttaatttgcagcttata 256  Q
    |||||| |||||| ||||||||||||||||||||||||    
T  19679902 ggtcttatttggagaaacaacttaatttgcagcttata 19679865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 220 - 253
Target Start/End: Original strand, 43951696 - 43951729
Alignment:
Q  220 gtcttgtttggataaacaacttaatttgcagctt 253  Q
    ||||||||||||||||||||||| ||||||||||    
T  43951696 gtcttgtttggataaacaacttactttgcagctt 43951729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 37138242 - 37138274
Alignment:
Q  224 tgtttggataaacaacttaatttgcagcttata 256  Q
    |||||||||||||||||||||||| ||||||||    
T  37138242 tgtttggataaacaacttaatttgaagcttata 37138274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 214 - 256
Target Start/End: Original strand, 48064179 - 48064221
Alignment:
Q  214 acttaggtcttgtttggataaacaacttaatttgcagcttata 256  Q
    ||||||| | |||||||||||||||||||||||||||||||||    
T  48064179 acttaggccatgtttggataaacaacttaatttgcagcttata 48064221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 223 - 255
Target Start/End: Original strand, 35925584 - 35925616
Alignment:
Q  223 ttgtttggataaacaacttaatttgcagcttat 255  Q
    |||||||||||||||||||||||||||||||||    
T  35925584 ttgtttggataaacaacttaatttgcagcttat 35925616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 221 - 256
Target Start/End: Complemental strand, 11218138 - 11218103
Alignment:
Q  221 tcttgtttggataaacaacttaatttgcagcttata 256  Q
    ||||||||||||||||||| ||||||||||||||||    
T  11218138 tcttgtttggataaacaacataatttgcagcttata 11218103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 256
Target Start/End: Complemental strand, 1510132 - 1510100
Alignment:
Q  224 tgtttggataaacaacttaatttgcagcttata 256  Q
    |||||||||||||||||||||||| ||||||||    
T  1510132 tgtttggataaacaacttaatttgtagcttata 1510100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 256
Target Start/End: Complemental strand, 4920940 - 4920908
Alignment:
Q  224 tgtttggataaacaacttaatttgcagcttata 256  Q
    |||||||||||||| ||||||||||||||||||    
T  4920940 tgtttggataaacagcttaatttgcagcttata 4920908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 34404932 - 34404964
Alignment:
Q  224 tgtttggataaacaacttaatttgcagcttata 256  Q
    |||||||||||||||||||||||| ||||||||    
T  34404932 tgtttggataaacaacttaatttgaagcttata 34404964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 256
Target Start/End: Complemental strand, 34619552 - 34619520
Alignment:
Q  224 tgtttggataaacaacttaatttgcagcttata 256  Q
    |||||||||||||| ||||||||||||||||||    
T  34619552 tgtttggataaacagcttaatttgcagcttata 34619520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 38219825 - 38219857
Alignment:
Q  224 tgtttggataaacaacttaatttgcagcttata 256  Q
    |||||||||||||| ||||||||||||||||||    
T  38219825 tgtttggataaacatcttaatttgcagcttata 38219857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 212 - 256
Target Start/End: Complemental strand, 46252884 - 46252840
Alignment:
Q  212 atacttaggtcttgtttggataaacaacttaatttgcagcttata 256  Q
    ||||||| |||||||||||||| ||| |||||||| |||||||||    
T  46252884 atacttaagtcttgtttggatacacagcttaattttcagcttata 46252840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 224 - 256
Target Start/End: Complemental strand, 31751746 - 31751714
Alignment:
Q  224 tgtttggataaacaacttaatttgcagcttata 256  Q
    |||||||||||||||||||||||||||||||||    
T  31751746 tgtttggataaacaacttaatttgcagcttata 31751714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 216 - 256
Target Start/End: Complemental strand, 44426585 - 44426545
Alignment:
Q  216 ttaggtcttgtttggataaacaacttaatttgcagcttata 256  Q
    ||||||| ||||||| |||||||||||||||||||||||||    
T  44426585 ttaggtcatgtttgggtaaacaacttaatttgcagcttata 44426545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 256
Target Start/End: Complemental strand, 6526416 - 6526382
Alignment:
Q  222 cttgtttggataaacaacttaatttgcagcttata 256  Q
    |||||||||||||||| ||||||||||||||||||    
T  6526416 cttgtttggataaacagcttaatttgcagcttata 6526382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 256
Target Start/End: Original strand, 8499085 - 8499119
Alignment:
Q  222 cttgtttggataaacaacttaatttgcagcttata 256  Q
    |||||||||||||||||||||||||||| ||||||    
T  8499085 cttgtttggataaacaacttaatttgcaacttata 8499119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 256
Target Start/End: Complemental strand, 31118900 - 31118866
Alignment:
Q  222 cttgtttggataaacaacttaatttgcagcttata 256  Q
    ||||||||||||||||||||||| |||||||||||    
T  31118900 cttgtttggataaacaacttaatgtgcagcttata 31118866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 256
Target Start/End: Original strand, 31891791 - 31891831
Alignment:
Q  216 ttaggtcttgtttggataaacaacttaatttgcagcttata 256  Q
    ||||||| | ||||||||||||||||||||||||| |||||    
T  31891791 ttaggtcctatttggataaacaacttaatttgcagtttata 31891831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 256
Target Start/End: Complemental strand, 37353438 - 37353406
Alignment:
Q  224 tgtttggataaacaacttaatttgcagcttata 256  Q
    |||||||||||||||||| ||||||||||||||    
T  37353438 tgtttggataaacaacttgatttgcagcttata 37353406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 216 - 256
Target Start/End: Original strand, 46945767 - 46945807
Alignment:
Q  216 ttaggtcttgtttggataaacaacttaatttgcagcttata 256  Q
    ||||| ||||||||||||||||||||| |||||||||||||    
T  46945767 ttaggccttgtttggataaacaacttagtttgcagcttata 46945807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 226 - 256
Target Start/End: Original strand, 32156891 - 32156921
Alignment:
Q  226 tttggataaacaacttaatttgcagcttata 256  Q
    |||||||||||||||||||||||||||||||    
T  32156891 tttggataaacaacttaatttgcagcttata 32156921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 25595986 - 25596018
Alignment:
Q  224 tgtttggataaacaacttaatttgcagcttata 256  Q
    |||||||||||||||||||| ||||||||||||    
T  25595986 tgtttggataaacaacttaacttgcagcttata 25596018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 256
Target Start/End: Complemental strand, 31002992 - 31002960
Alignment:
Q  224 tgtttggataaacaacttaatttgcagcttata 256  Q
    |||||||||||||||||||||||||| ||||||    
T  31002992 tgtttggataaacaacttaatttgcatcttata 31002960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 5559610 - 5559642
Alignment:
Q  224 tgtttggataaacaacttaatttgcagcttata 256  Q
    |||||||||||||||||||||||||||||||||    
T  5559610 tgtttggataaacaacttaatttgcagcttata 5559642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 224 - 255
Target Start/End: Complemental strand, 11715049 - 11715018
Alignment:
Q  224 tgtttggataaacaacttaatttgcagcttat 255  Q
    ||||||||||||||||||||||||||||||||    
T  11715049 tgtttggataaacaacttaatttgcagcttat 11715018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 252
Target Start/End: Original strand, 8089666 - 8089707
Alignment:
Q  211 tatacttaggtcttgtttggataaacaacttaatttgcagct 252  Q
    |||||||||| | |||||||||||||||||||||||| ||||    
T  8089666 tatacttaggccatgtttggataaacaacttaatttgtagct 8089707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 256
Target Start/End: Original strand, 1942943 - 1942983
Alignment:
Q  216 ttaggtcttgtttggataaacaacttaatttgcagcttata 256  Q
    ||||||| |||||||||||||| || |||||||||||||||    
T  1942943 ttaggtcctgtttggataaacatctaaatttgcagcttata 1942983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 6593180 - 6593212
Alignment:
Q  224 tgtttggataaacaacttaatttgcagcttata 256  Q
    ||||||||||||||||||||||| |||||||||    
T  6593180 tgtttggataaacaacttaatttacagcttata 6593212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 12467070 - 12467102
Alignment:
Q  224 tgtttggataaacaacttaatttgcagcttata 256  Q
    ||||||||||||||| |||||||||||||||||    
T  12467070 tgtttggataaacaatttaatttgcagcttata 12467102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 256
Target Start/End: Complemental strand, 29845087 - 29845055
Alignment:
Q  224 tgtttggataaacaacttaatttgcagcttata 256  Q
    |||||||||||||||||||||||||| ||||||    
T  29845087 tgtttggataaacaacttaatttgcaacttata 29845055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 30291141 - 30291173
Alignment:
Q  224 tgtttggataaacaacttaatttgcagcttata 256  Q
    ||||||||||| |||||||||||||||||||||    
T  30291141 tgtttggataaccaacttaatttgcagcttata 30291173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 32927977 - 32928009
Alignment:
Q  224 tgtttggataaacaacttaatttgcagcttata 256  Q
    |||||| ||||||||||||||||||||||||||    
T  32927977 tgtttgaataaacaacttaatttgcagcttata 32928009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 256
Target Start/End: Complemental strand, 38105053 - 38105021
Alignment:
Q  224 tgtttggataaacaacttaatttgcagcttata 256  Q
    ||||||||||||||||||| |||||||||||||    
T  38105053 tgtttggataaacaacttattttgcagcttata 38105021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 256
Target Start/End: Complemental strand, 42573969 - 42573937
Alignment:
Q  224 tgtttggataaacaacttaatttgcagcttata 256  Q
    |||||||||||||| ||||||||||||||||||    
T  42573969 tgtttggataaacagcttaatttgcagcttata 42573937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 19039661 - 19039693
Alignment:
Q  224 tgtttggataaacaacttaatttgcagcttata 256  Q
    |||||||||||||||||||||||||||||||||    
T  19039661 tgtttggataaacaacttaatttgcagcttata 19039693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 54214895 - 54214927
Alignment:
Q  224 tgtttggataaacaacttaatttgcagcttata 256  Q
    |||||||||||||||||||||||||||||||||    
T  54214895 tgtttggataaacaacttaatttgcagcttata 54214927  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 256
Target Start/End: Complemental strand, 11155589 - 11155555
Alignment:
Q  222 cttgtttggataaacaacttaatttgcagcttata 256  Q
    ||||||||||||||||||||| |||||||||||||    
T  11155589 cttgtttggataaacaacttactttgcagcttata 11155555  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 255
Target Start/End: Original strand, 47946110 - 47946140
Alignment:
Q  225 gtttggataaacaacttaatttgcagcttat 255  Q
    |||||||||||||||||||||||||||||||    
T  47946110 gtttggataaacaacttaatttgcagcttat 47946140  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 2987069 - 2987101
Alignment:
Q  224 tgtttggataaacaacttaatttgcagcttata 256  Q
    ||||||||||||||| |||||||||||||||||    
T  2987069 tgtttggataaacaagttaatttgcagcttata 2987101  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 47399414 - 47399446
Alignment:
Q  224 tgtttggataaacaacttaatttgcagcttata 256  Q
    ||||||||||||||||||| |||||||||||||    
T  47399414 tgtttggataaacaacttagtttgcagcttata 47399446  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 50298411 - 50298443
Alignment:
Q  224 tgtttggataaacaacttaatttgcagcttata 256  Q
    |||||||||||||||||||||||| ||||||||    
T  50298411 tgtttggataaacaacttaatttgaagcttata 50298443  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 219 - 255
Target Start/End: Original strand, 39621859 - 39621895
Alignment:
Q  219 ggtcttgtttggataaacaacttaatttgcagcttat 255  Q
    |||||||||||||||||||||||| ||||||||||||    
T  39621859 ggtcttgtttggataaacaacttattttgcagcttat 39621895  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 12140446 - 12140478
Alignment:
Q  224 tgtttggataaacaacttaatttgcagcttata 256  Q
    ||||||||||||||||||| |||||||||||||    
T  12140446 tgtttggataaacaacttattttgcagcttata 12140478  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 256
Target Start/End: Complemental strand, 28039506 - 28039474
Alignment:
Q  224 tgtttggataaacaacttaatttgcagcttata 256  Q
    ||||||||||||||||||||||||||| |||||    
T  28039506 tgtttggataaacaacttaatttgcagtttata 28039474  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 256
Target Start/End: Original strand, 40158644 - 40158676
Alignment:
Q  224 tgtttggataaacaacttaatttgcagcttata 256  Q
    |||||||||||||||||||||||| ||||||||    
T  40158644 tgtttggataaacaacttaatttgtagcttata 40158676  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 256
Target Start/End: Complemental strand, 41880692 - 41880660
Alignment:
Q  224 tgtttggataaacaacttaatttgcagcttata 256  Q
    ||||||||||||||||||| |||||||||||||    
T  41880692 tgtttggataaacaacttactttgcagcttata 41880660  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 216 - 256
Target Start/End: Original strand, 42907244 - 42907284
Alignment:
Q  216 ttaggtcttgtttggataaacaacttaatttgcagcttata 256  Q
    ||||| |||| ||||||||||| ||||||||||||||||||    
T  42907244 ttaggacttgattggataaacagcttaatttgcagcttata 42907284  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 226 - 256
Target Start/End: Original strand, 769045 - 769075
Alignment:
Q  226 tttggataaacaacttaatttgcagcttata 256  Q
    |||||||||||||||||||||||||||||||    
T  769045 tttggataaacaacttaatttgcagcttata 769075  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 224 - 256
Target Start/End: Complemental strand, 20368362 - 20368330
Alignment:
Q  224 tgtttggataaacaacttaatttgcagcttata 256  Q
    |||||||||||||||||||||| ||||||||||    
T  20368362 tgtttggataaacaacttaattggcagcttata 20368330  T

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Target: scaffold0016 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 242
Target Start/End: Original strand, 36849 - 36881
Alignment:
Q  210 atatacttaggtcttgtttggataaacaactta 242  Q
    ||||||||| |||||||||||||||||||||||    
T  36849 atatacttaagtcttgtttggataaacaactta 36881  T

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