View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15320_high_11 (Length: 249)
Name: NF15320_high_11
Description: NF15320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15320_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 25 - 232
Target Start/End: Original strand, 13118794 - 13119001
Alignment:
| Q |
25 |
aaacattgtctcacccttcttaaaatctcctgttttgaatccttctattgctgtctgtactgccaaaggcaaacttgcagcttcctcaaatgaaagacat |
124 |
Q |
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| T |
13118794 |
aaacattgtctcacccttcttaaaatctcctgttttgaatccttctattgctgtctgtactgccaaaggcaaacttgcagcttcctcaaatgaaagacat |
13118893 |
T |
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| Q |
125 |
tttggttttcttgcaactaagttctcttccacaacaatgaattgtgccaatgttccaagctgctttggtttttccatactgttgaaatcttgtatgtttc |
224 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13118894 |
tttggttttcttgcaactaacttctcttccacaacaatgaattgtgccaatgttccaagctgctttggtttttccatactgttgaaatcttgtatgtttc |
13118993 |
T |
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| Q |
225 |
catacact |
232 |
Q |
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|||||||| |
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| T |
13118994 |
catacact |
13119001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 25 - 228
Target Start/End: Complemental strand, 13008652 - 13008449
Alignment:
| Q |
25 |
aaacattgtctcacccttcttaaaatctcctgttttgaatccttctattgctgtctgtactgccaaaggcaaacttgcagcttcctcaaatgaaagacat |
124 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
13008652 |
aaacattgtctcacccttcttaaaatctcctgttttgaatccttctattgctgtctgtactgccaaaggcaaacttgcagcttcctcaaatgaaagacgt |
13008553 |
T |
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| Q |
125 |
tttggttttcttgcaactaagttctcttccacaacaatgaattgtgccaatgttccaagctgctttggtttttccatactgttgaaatcttgtatgtttc |
224 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13008552 |
ttaggttttcttgcaactaagttctcttccacaacaatgaattgtgccaatgttccaagctgctttggtttttccatactgttgaaatcttgtatgtttc |
13008453 |
T |
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| Q |
225 |
cata |
228 |
Q |
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|||| |
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| T |
13008452 |
cata |
13008449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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