View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15320_high_3 (Length: 478)
Name: NF15320_high_3
Description: NF15320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15320_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 461
Target Start/End: Complemental strand, 47107345 - 47106881
Alignment:
| Q |
1 |
tgatccaaaaataaaatcacacactggtttttgatgattcacaatatttataatagtataaagacacaatgaactcataactttgattgatgtaaagtat |
100 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47107345 |
tgatccaaaaataaaatcacacgctggtttttgatgattcacaatattt-taatagtataaagacacaatgaactcataactttgattgatgtaaagtat |
47107247 |
T |
|
| Q |
101 |
aac----atataataatattagggcaaaatataccacatataatagctatgagtttattgtcaaaattgatctttgataaaatctattacggaagag-tg |
195 |
Q |
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| T |
47107246 |
aactaacatataataatattagggcaaaatataccacatataatagctatgagtttattgtcaaaattgatctttgataaaatctattacggaagagatg |
47107147 |
T |
|
| Q |
196 |
aaaatatagaagatctggtccacatttttgtgtaatttgatttggagtaatggttcataactaatata--actacaaatcacgtacggtctcataatgca |
293 |
Q |
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| T |
47107146 |
ataatatagaagatctggtccacatttttgtgtaatttgatttggagtaaaggttcataactaatatataactacaaatcacgtacggtct--taatgca |
47107049 |
T |
|
| Q |
294 |
tgcatatacttttcaacacagccacacaatttccgcataagtcaattcgaatcatgaagatgatgtcattgatcagcggaaccctcggggggactaatac |
393 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
47107048 |
tgcatatacttttcaacacagccacacattttccgcataagtcaattcgaatcatgaagatgatgtcattgatcagcggaaccctcgggggggctaatac |
47106949 |
T |
|
| Q |
394 |
gatattattggattgttttccgcatgttgctggcagtggaacacaccacaccacaatttcatctctcc |
461 |
Q |
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| T |
47106948 |
gatattattggattgttttccgcatgttgctggcagtggaacacaccacaccacaatttcatctctcc |
47106881 |
T |
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