View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15320_high_5 (Length: 425)

Name: NF15320_high_5
Description: NF15320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15320_high_5
NF15320_high_5
[»] chr4 (1 HSPs)
chr4 (183-409)||(25910491-25910717)
[»] chr3 (1 HSPs)
chr3 (182-409)||(38879459-38879691)
[»] chr2 (1 HSPs)
chr2 (1-182)||(44634005-44634183)


Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 183 - 409
Target Start/End: Original strand, 25910491 - 25910717
Alignment:
Q  183 gaaaaatgctaaatagcacgataactttttcgtgctaatcacaccaatgctttttcttatgcttagttgaccttatcaaacacgttgctctccattttta 282  Q
    |||||||||||||||||| |||||| |||||||||||||||| | |||||| |||||||||||||||||||||||||||||||||| |||||||||||||    
T  25910491 gaaaaatgctaaatagcaggataacattttcgtgctaatcacgcgaatgctatttcttatgcttagttgaccttatcaaacacgtttctctccattttta 25910590  T
Q  283 tgctgtgttttcatcttcacatccccttctccatttttattttgctcgtaatgcacaatcctcatccatttgaaacaatatggtttaatgtgaaatgatg 382  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  25910591 tgctgtgttttcatcttcacatccccttctccatttttattttgctcgtaatgcacaatcctcgtccatttgaaacaatatggtttaatgtgaaatgatg 25910690  T
Q  383 aatatttagattgttttgtgatgatat 409  Q
    |||||||||||||||||||||||||||    
T  25910691 aatatttagattgttttgtgatgatat 25910717  T

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Target: chr3 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 182 - 409
Target Start/End: Complemental strand, 38879691 - 38879459
Alignment:
Q  182 agaaaaatgctaaatagcacgataactttttcgtgctaatcacaccaatgctttttcttatgcttagttgaccttatcaaacacgttgctctccattttt 281  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||  || ||||||||||||    
T  38879691 agaaaaatgctaaatagcacgataactttttcgtgctaatcacacgaatgctatttcttatgcttagttgaccttatcaaacatatttctctccattttt 38879592  T
Q  282 atgctgtgttttcatcttcacatccccttctccatttttattttgctcgtaat-----gcacaatcctcatccatttgaaacaatatggtttaatgtgaa 376  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||     ||||||||||| ||||||||||||||||||||||||||||||    
T  38879591 atgctgtgttttcatcttcatatccccttctccatttttattttgctcgtaatgcactgcacaatcctcgtccatttgaaacaatatggtttaatgtgaa 38879492  T
Q  377 atgatgaatatttagattgttttgtgatgatat 409  Q
    |||||||||||||||||||||||||||||||||    
T  38879491 atgatgaatatttagattgttttgtgatgatat 38879459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 44634005 - 44634183
Alignment:
Q  1 acaagttaaaaaattcctttttccaactaacaaaggtactagtattattttagtctgcctcgcgaaactcgtgtatgtgggggtgataaacgccaaagaa 100  Q
    |||| ||||||||||  ||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44634005 acaacttaaaaaattattttttccaactaacaaaggtacta---ttattttagtctgcctcgcgaaactcgtgtatgtgggggtgataaacgccaaagaa 44634101  T
Q  101 cactgaatattgccttcgtaaaataaattgaatagtgcctcactttaattttccatgtacttcgaatccatatttaatttta 182  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44634102 cgctgaatattgccttcgtaaaataaattgaatagtgcctcactttaattttccatgtacttcgaatccatatttaatttta 44634183  T

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