View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15320_low_10 (Length: 354)
Name: NF15320_low_10
Description: NF15320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15320_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 316; Significance: 1e-178; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 8205510 - 8205171
Alignment:
| Q |
1 |
caaccactttgatgaaaatggagatggaaaactatcatcatcggagctgcggcaatgtgttgaggcaatcggggcaaagatgtcgaacgaggaggcggaa |
100 |
Q |
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| T |
8205510 |
caaccactttgatgaaaatggagatggaaaaatatcatcatcggagctgcggcaatgtgttgaggcaatcggggcaaagatgtcaaacgaggaggcggaa |
8205411 |
T |
|
| Q |
101 |
atggcggttgagcttctcgactcggacggtgatgggttgattgggttggatgattttgtgaagtttgtagagggagggaaagaggaagagaaagtaaatg |
200 |
Q |
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| T |
8205410 |
atggcggttgagcttctcgactcggacggggatgggttgattgggttggatgattttgtgaagtttgtagagggagggaaagaggaagagaaagtaaatg |
8205311 |
T |
|
| Q |
201 |
acctaagagaggcttttaagatgtatgaaatggagggatgtggttgcatcacaccaaagagtctaaagagaatgcttggaagattgggtgagtgtagaag |
300 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8205310 |
acctaagagaggcttttaagatgtatgaaatggaaggatgtggttgcatcacaccaaagagtctaaagagaatgcttggaagattgggtgagtgtagaag |
8205211 |
T |
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| Q |
301 |
tatagatgagtgtcaagctatgatttctcaatttgatatt |
340 |
Q |
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| T |
8205210 |
tgtagatgaatgtcaagctatgatttctcaatttgatatt |
8205171 |
T |
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