View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15320_low_12 (Length: 348)
Name: NF15320_low_12
Description: NF15320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15320_low_12 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 14 - 348
Target Start/End: Complemental strand, 1885942 - 1885609
Alignment:
| Q |
14 |
tgataagaaatctagcagcagaaatctaatgtaataaaatttaagctgagctaccatacattcatcatcaatatacttttgatcctaatatttgagtgaa |
113 |
Q |
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| T |
1885942 |
tgataagaaatccagcagcagaaatctaatgtaataaaatttaagctgagctaccatacattcatcatcaatatacttttgatcctaatatttgagtgaa |
1885843 |
T |
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| Q |
114 |
tcaccaaagttgtccctaaaataatacgatattgtcaacttagtctataaaatagtctttgaattgagaatcctcgaccacattattccttttgagtcgg |
213 |
Q |
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| T |
1885842 |
tcaccaaagttgtccctaaaataatacgatattgtcaacttagtctataaaatagtctttgaattgagaatcctcgaccacattattccttttgagtcgg |
1885743 |
T |
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| Q |
214 |
tcaatttagttactaaaattattcaacagaaattaatttcatcgagaatctcccaatttcaagaattattttgaaattccatcaaatttcaaaaactaaa |
313 |
Q |
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| T |
1885742 |
tcaatttagttactaaaattactcaacagaaattaatttcatcgagaatct-ccaatttcaagaattattttgaaattccatcaaatttcaaaaactaaa |
1885644 |
T |
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| Q |
314 |
ttgtccaatctctacaattgcaaaggcaaattggt |
348 |
Q |
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|||||| |||||||||||||||||||||||||||| |
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| T |
1885643 |
ttgtccgatctctacaattgcaaaggcaaattggt |
1885609 |
T |
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