View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15320_low_13 (Length: 340)

Name: NF15320_low_13
Description: NF15320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15320_low_13
NF15320_low_13
[»] chr4 (20 HSPs)
chr4 (1-340)||(2621057-2621396)
chr4 (107-264)||(2367648-2367805)
chr4 (99-234)||(2486229-2486364)
chr4 (122-217)||(5106333-5106428)
chr4 (99-217)||(5102106-5102224)
chr4 (111-232)||(2547466-2547587)
chr4 (123-244)||(12124770-12124891)
chr4 (120-220)||(2472035-2472135)
chr4 (111-234)||(2491062-2491185)
chr4 (99-217)||(2519155-2519273)
chr4 (99-160)||(2382562-2382623)
chr4 (99-234)||(2525679-2525814)
chr4 (123-264)||(2373212-2373352)
chr4 (24-213)||(2477421-2477604)
chr4 (105-205)||(2391036-2391136)
chr4 (115-234)||(2467468-2467587)
chr4 (27-86)||(2486145-2486204)
chr4 (99-234)||(5035544-5035679)
chr4 (189-231)||(1517029-1517071)
chr4 (149-237)||(12126852-12126940)
[»] chr7 (1 HSPs)
chr7 (120-217)||(2576415-2576512)
[»] chr1 (1 HSPs)
chr1 (120-220)||(15837979-15838079)
[»] chr5 (1 HSPs)
chr5 (189-245)||(12846948-12847004)


Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 2621396 - 2621057
Alignment:
Q  1 tgctatagcaatggaagaaagtaagcgatttgatgtctacagggaaagtggatatattagtaagaagctcgtcgaggtcactttctgtagagaagcccgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2621396 tgctatagcaatggaagaaagtaagcgatttgatgtctacagggaaagtggatatattagtaagaagctcgtcgaggtcactttctgtagagaagcccgt 2621297  T
Q  101 gatgttgagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2621296 gatgttgagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtg 2621197  T
Q  201 atggacaaaaactgtttggacacgagggagagaggttccaagtaatggttgttgtcgccgtcgtcaactaacttgaagatacactcccaccactcctctg 300  Q
    |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  2621196 atggacaaaaactgtttggatacgagggagagaggttcccagtaatggttgttgtcgccatcgtcaactaacttgaagatacactcccaccactcctctg 2621097  T
Q  301 gtaagaatgaacatgtttccgccattgtttttggaatatt 340  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  2621096 gtaagaatgaacatgtttccgccattgtttgtggaatatt 2621057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 107 - 264
Target Start/End: Complemental strand, 2367805 - 2367648
Alignment:
Q  107 gagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggac 206  Q
    |||||||||||  || |||||||| | ||| ||||||  || ||||||||| ||||||||||| ||||  |||||||| || |||||||||||||||||     
T  2367805 gagggatgtgaggttggggaacctttggaaaaggcgataaaggaaagggattgttttatcggacattgctatggagaatcggagacggttggtgatggag 2367706  T
Q  207 aaaaactgtttggacacgagggagagaggttccaagtaatggttgttgtcgccgtcgt 264  Q
    | ||| |||||||| |||| ||| ||||||||||||||  |||||||||||| |||||    
T  2367705 agaaattgtttggagacgatggaaagaggttccaagtagcggttgttgtcgctgtcgt 2367648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 99 - 234
Target Start/End: Original strand, 2486229 - 2486364
Alignment:
Q  99 gtgatgttgagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttgg 198  Q
    ||||| ||| ||||||| | |||||||||||  |  ||||| ||| ||| ||||||||| ||||| |||||||||||||  ||||| || ||||||||||    
T  2486229 gtgatattgtgggatgtaacattagggaacccataaaagagacgatgaaggaaagggattgttttctcggagattgtgaccgagaatcggagacggttgg 2486328  T
Q  199 tgatggacaaaaactgtttggacacgagggagagag 234  Q
    ||||||||| ||||||||| || |||||||||||||    
T  2486329 tgatggacagaaactgttttgagacgagggagagag 2486364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 122 - 217
Target Start/End: Complemental strand, 5106428 - 5106333
Alignment:
Q  122 agggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgttt 217  Q
    ||||||||| | |||||||||| |||||||||||||||||| ||  | ||||||||  ||||| ||  ||||||||||||||||||||||||||||    
T  5106428 agggaaccttttgaagaggcgatgaatgaaagggatggtttgattagtgattgtgaccgagaatcgaggacggttggtgatggacaaaaactgttt 5106333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 99 - 217
Target Start/End: Complemental strand, 5102224 - 5102106
Alignment:
Q  99 gtgatgttgagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttgg 198  Q
    ||||||||||| |||||||  ||||||||||| ||||| ||| ||||||||||||||||||||  ||| | ||||||||  ||||| || ||||  || |    
T  5102224 gtgatgttgagtgatgtgacgttagggaacctttcgaaaaggagaggaatgaaagggatggttcgatcagtgattgtgaccgagaatcgaagactattag 5102125  T
Q  199 tgatggacaaaaactgttt 217  Q
    |||| ||||||||||||||    
T  5102124 tgatagacaaaaactgttt 5102106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 111 - 232
Target Start/End: Original strand, 2547466 - 2547587
Alignment:
Q  111 gatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaa 210  Q
    |||||||| ||||||||||| | ||||| | |||||| | || ||||| | | |  |||||||||||  |||||||| ||||||||||||||||||| ||    
T  2547466 gatgtgatgttagggaacctttggaagaagtgaggaagggaaaggatgatatgactggagattgtgactgagaaccggagacggttggtgatggacagaa 2547565  T
Q  211 actgtttggacacgagggagag 232  Q
    |||||||||| |||| ||||||    
T  2547566 actgtttggagacgatggagag 2547587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 123 - 244
Target Start/End: Original strand, 12124770 - 12124891
Alignment:
Q  123 gggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttggaca 222  Q
    |||||||| | |||||||||   || ||||||||| |||| ||| ||||||| |||||| ||  | ||||||||||||||||| | ||| |||||||| |    
T  12124770 gggaacctttggaagaggcggtcaaggaaagggattgtttcatcagagattgcgatggaaaattggagacggttggtgatggagagaaattgtttggaga 12124869  T
Q  223 cgagggagagaggttccaagta 244  Q
    | | ||||||||||||||||||    
T  12124870 caatggagagaggttccaagta 12124891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 120 - 220
Target Start/End: Original strand, 2472035 - 2472135
Alignment:
Q  120 ttagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttgg 219  Q
    ||||||||||| ||||||||| || ||| ||||||||| |||| |  | ||||||||| |||||| |  ||||| ||||||||||| |||||||||||||    
T  2472035 ttagggaacctttcgaagaggtgatgaaggaaagggattgtttcacagtagattgtgagggagaatcagagacgattggtgatggagaaaaactgtttgg 2472134  T
Q  220 a 220  Q
    |    
T  2472135 a 2472135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 234
Target Start/End: Original strand, 2491062 - 2491185
Alignment:
Q  111 gatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaa 210  Q
    ||||| || ||||||||||| || ||||| |||  || ||||||||| |||  ||||||||||||||  || || || |||||||| |||||||||| ||    
T  2491062 gatgtaatgttagggaacctttcaaagagacgattaaggaaagggattgttgcatcggagattgtgaccgaaaatcggagacggtttgtgatggacagaa 2491161  T
Q  211 actgtttggacacgagggagagag 234  Q
    ||||||| || ||||| |||||||    
T  2491162 actgttttgagacgagtgagagag 2491185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 99 - 217
Target Start/End: Original strand, 2519155 - 2519273
Alignment:
Q  99 gtgatgttgagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttgg 198  Q
    ||||||||||| ||||| |  || |||||||| || ||||| ||| ||| ||||||||| |||| ||| ||||||||||  ||| | || | ||||||||    
T  2519155 gtgatgttgagtgatgtaacgttggggaacctatcaaagagacgatgaaggaaagggattgtttgatctgagattgtgactgaggatcgaaaacggttgg 2519254  T
Q  199 tgatggacaaaaactgttt 217  Q
    ||||||||| |||||||||    
T  2519255 tgatggacagaaactgttt 2519273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 160
Target Start/End: Complemental strand, 2382623 - 2382562
Alignment:
Q  99 gtgatgttgagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggt 160  Q
    ||||| ||||||||||||| |||||||| |||   |||||||||||||||||||||||||||    
T  2382623 gtgatattgagggatgtgacattagggagccttcggaagaggcgaggaatgaaagggatggt 2382562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 99 - 234
Target Start/End: Original strand, 2525679 - 2525814
Alignment:
Q  99 gtgatgttgagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttgg 198  Q
    ||||| ||||| ||||  || ||||||||||| || ||||| |||  ||  |||||||| |||  || |||||||||||   |||| || |||| |||||    
T  2525679 gtgatattgagtgatgcaatgttagggaacctttcaaagagacgattaagaaaagggatagttgcattggagattgtgaccaagaatcgaagactgttgg 2525778  T
Q  199 tgatggacaaaaactgtttggacacgagggagagag 234  Q
    ||||||||| ||||||||| || |||||||||||||    
T  2525779 tgatggacagaaactgttttgagacgagggagagag 2525814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 123 - 264
Target Start/End: Complemental strand, 2373352 - 2373212
Alignment:
Q  123 gggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttggaca 222  Q
    |||||||| | ||||||||||  || |||||| || ||||||||| | ||||  |||||||| || ||| | ||||||||||| | ||| |||||||| |    
T  2373352 gggaacctttggaagaggcgattaaggaaaggaattgttttatcg-acattgctatggagaatcggagatgattggtgatggagagaaattgtttggaaa 2373254  T
Q  223 cgagggagagaggttccaagtaatggttgttgtcgccgtcgt 264  Q
    | | |||||||||||| |||||  || |||||| ||||||||    
T  2373253 caacggagagaggttcgaagtagcggctgttgttgccgtcgt 2373212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 213
Target Start/End: Original strand, 2477421 - 2477604
Alignment:
Q  24 agcgatttgatgtctacagggaaagtggatatattagtaagaagctcgtcgaggtcactttctgtagagaagcccgtgatgttgagggatgtgatattag 123  Q
    |||||| ||| ||||| ||  ||||||||||| |  ||||||||||| || |||||||||||| | ||||     |||||||| ||||||||||  ||||    
T  2477421 agcgatctgaggtctatagctaaagtggatatttgggtaagaagctcatcaaggtcactttctct-gaga-----gtgatgtttagggatgtgacgttag 2477514  T
Q  124 ggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaact 213  Q
    ||||||| |  |||||  || ||| | |||||||||||| |||||| ||||| |  ||||| || |||| |||||| ||||||| |||||    
T  2477515 ggaacctttgaaagagaggatgaagggaagggatggtttgatcggaaattgtcacagagaatcgaagactgttggttatggacagaaact 2477604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 205
Target Start/End: Complemental strand, 2391136 - 2391036
Alignment:
Q  105 ttgagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatgg 204  Q
    ||||||||||||| ||||| |||||  | |||||   |||||||||||||||||||||  | || |||| |||||||||| || |||  |||||||||||    
T  2391136 ttgagggatgtgacattagagaaccgttggaagatttgaggaatgaaagggatggtttgttgggtgattttgatggagaatcggagattgttggtgatgg 2391037  T
Q  205 a 205  Q
    |    
T  2391036 a 2391036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 115 - 234
Target Start/End: Original strand, 2467468 - 2467587
Alignment:
Q  115 tgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactg 214  Q
    ||||||| |||||||| || ||||| ||| |||  |||||||| |||   ||||| || | || |||||| || |||| |||||| ||||||||||||||    
T  2467468 tgatattggggaacctttcaaagagacgatgaagtaaagggattgttccgtcggaaatcgagacggagaatcgaagactgttggtaatggacaaaaactg 2467567  T
Q  215 tttggacacgagggagagag 234  Q
    ||| || |||| ||||||||    
T  2467568 ttttgagacgacggagagag 2467587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 27 - 86
Target Start/End: Original strand, 2486145 - 2486204
Alignment:
Q  27 gatttgatgtctacagggaaagtggatatattagtaagaagctcgtcgaggtcactttct 86  Q
    ||||||| ||| | |||||||||||| ||||  |||||||||||| ||||||||||||||    
T  2486145 gatttgaggtccaaagggaaagtggagatatgtgtaagaagctcgccgaggtcactttct 2486204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 99 - 234
Target Start/End: Original strand, 5035544 - 5035679
Alignment:
Q  99 gtgatgttgagggatgtgatattagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttgg 198  Q
    ||||| ||||| ||||| |||||||||||||| || ||||| |||  || ||||||||| |||   || |||||| |||   |||| || ||||||||||    
T  5035544 gtgatattgagtgatgtaatattagggaacctttcaaagagacgactaaggaaagggattgttgcctcagagattttgaccaagaatcgaagacggttgg 5035643  T
Q  199 tgatggacaaaaactgtttggacacgagggagagag 234  Q
    ||||||| | ||||||||| || |||| ||| ||||    
T  5035644 tgatggagagaaactgttttgaaacgaaggaaagag 5035679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 231
Target Start/End: Complemental strand, 1517071 - 1517029
Alignment:
Q  189 agacggttggtgatggacaaaaactgtttggacacgagggaga 231  Q
    |||||||||||||||||||| || |||||||| ||||||||||    
T  1517071 agacggttggtgatggacaagaattgtttggaaacgagggaga 1517029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 237
Target Start/End: Original strand, 12126852 - 12126940
Alignment:
Q  149 gaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttggacacgagggagagaggtt 237  Q
    |||||||||  ||| ||| |||| || |||||||||  | ||||||||||||||||| | ||| |||||||| || | |||||||||||    
T  12126852 gaaagggattttttcatctgagactgcgatggagaataggagacggttggtgatggagagaaattgtttggagacaatggagagaggtt 12126940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 120 - 217
Target Start/End: Complemental strand, 2576512 - 2576415
Alignment:
Q  120 ttagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgttt 217  Q
    ||||||| ||| ||||||||||||  ||||||||||||||||  ||||| ||||||||  ||||| || ||||| ||||||||||| |||||||||||    
T  2576512 ttagggatcctttcgaagaggcgacaaatgaaagggatggttcaatcggtgattgtgaccgagaatcgaagacgattggtgatggataaaaactgttt 2576415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 120 - 220
Target Start/End: Complemental strand, 15838079 - 15837979
Alignment:
Q  120 ttagggaacctgtcgaagaggcgaggaatgaaagggatggttttatcggagattgtgatggagaaccgtagacggttggtgatggacaaaaactgtttgg 219  Q
    ||||||||||| | |||||||  ||||||||||||||| |||| |||   |||| ||| |||||| || ||||||||||||||||| | |||||||||||    
T  15838079 ttagggaacctttggaagaggttaggaatgaaagggattgtttgatctatgattttgagggagaatcggagacggttggtgatggagagaaactgtttgg 15837980  T
Q  220 a 220  Q
    |    
T  15837979 a 15837979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 189 - 245
Target Start/End: Original strand, 12846948 - 12847004
Alignment:
Q  189 agacggttggtgatggacaaaaactgtttggacacgagggagagaggttccaagtaa 245  Q
    ||||||||||||||||| |  ||||| ||||| |||||||||||| |||||||||||    
T  12846948 agacggttggtgatggagaggaactgcttggaaacgagggagagatgttccaagtaa 12847004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University