View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15320_low_18 (Length: 237)
Name: NF15320_low_18
Description: NF15320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15320_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 2621533 - 2621754
Alignment:
| Q |
1 |
caaccttagccatcctgttattgctactagctatgattttgagctagatgatgatgatcggttgttggcacttcccaaactccgcaaaattaatttatca |
100 |
Q |
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| T |
2621533 |
caaccttagccatcctgttattgctactagctatgattttgagctagatgatgatgatcggttgttggcacttcccaaactccgcaaaattaatttatca |
2621632 |
T |
|
| Q |
101 |
ggtaatttcatcgatcgccaatatgttaactctctctgcaagaactgtaaccttcttcgagatgtggtcgtgactgattggttttaatgaagcaaaggaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2621633 |
ggtaatttcatcgatcgccaatatgttaactctctctgcaagaactgtaaccttcttcgagatgtggtcgtgactgattggttttaatgaagcaaaggaa |
2621732 |
T |
|
| Q |
201 |
tatctatttagatgacgatact |
222 |
Q |
| |
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|||||||||||||||||||||| |
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|
| T |
2621733 |
tatctatttagatgacgatact |
2621754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 65 - 157
Target Start/End: Original strand, 2373666 - 2373761
Alignment:
| Q |
65 |
ttggcacttcccaaactccgcaaaattaatttatcaggtaatttcatc---gatcgccaatatgttaactctctctgcaagaactgtaaccttctt |
157 |
Q |
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| T |
2373666 |
ttggcacttcccaaactccgcaagattaatttatcaggtaattgcatcaaagatcaccaatctattaactatctcttcaaaaattgtaaccttctt |
2373761 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 65 - 156
Target Start/End: Original strand, 2368103 - 2368197
Alignment:
| Q |
65 |
ttggcacttcccaaactccgcaaaattaatttatcaggtaatt---tcatcgatcgccaatatgttaactctctctgcaagaactgtaaccttct |
156 |
Q |
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| T |
2368103 |
ttggcacttcccaaactccgcaagattaatttatctggtaattggatcaaagatcgacaatctattaactatctcttcaagaactgtgaccttct |
2368197 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 52 - 158
Target Start/End: Complemental strand, 2471680 - 2471574
Alignment:
| Q |
52 |
tgatgatcggttgttggcacttcccaaactccgcaaaattaatttatcaggtaatttcatcgatcgccaatatgttaactctctctgcaagaactgtaac |
151 |
Q |
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|||||||| ||||||| |||||||||||||||||| ||| |||||| ||||| || || | |||||||| | ||| | |||||||||||| |||||| |
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| T |
2471680 |
tgatgatcaattgttggaacttcccaaactccgcaagatttatttatatggtaaattgatggttcgccaatctattatcgatctctgcaagaattgtaac |
2471581 |
T |
|
| Q |
152 |
cttcttc |
158 |
Q |
| |
|
||||||| |
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| T |
2471580 |
cttcttc |
2471574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 121
Target Start/End: Original strand, 2382915 - 2383000
Alignment:
| Q |
36 |
attttgagctagatgatgatgatcggttgttggcacttcccaaactccgcaaaattaatttatcaggtaatttcatcgatcgccaa |
121 |
Q |
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|||||| ||||||||||||| ||| || |||||||||||||||||||| || |||||||| | ||||||| ||||||| ||||| |
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| T |
2382915 |
attttgtgctagatgatgataatcaatttttggcacttcccaaactccgaaagattaatttgtatggtaattccatcgatagccaa |
2383000 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 57 - 165
Target Start/End: Original strand, 5102506 - 5102614
Alignment:
| Q |
57 |
atcggttgttggcacttcccaaactccgcaaaattaatttatcaggtaatttcatcgatcgccaatatgttaactctctctgcaagaactgtaaccttct |
156 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||| |||||| |||||||||| | | ||||| | ||||| ||| |||| ||||||| ||||||| |
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| T |
5102506 |
atcgattgttggcacttcccaaactccgcaagattgttttatctcgtaatttcataggtacccaatctattaaccatctttgcaggaactgtgaccttct |
5102605 |
T |
|
| Q |
157 |
tcgagatgt |
165 |
Q |
| |
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|| |||||| |
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|
| T |
5102606 |
tcaagatgt |
5102614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 66 - 112
Target Start/End: Complemental strand, 12124452 - 12124406
Alignment:
| Q |
66 |
tggcacttcccaaactccgcaaaattaatttatcaggtaatttcatc |
112 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||||||| |||| |
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|
| T |
12124452 |
tggcacttcccaaactccgcaagattaatttatctggtaattgcatc |
12124406 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 92
Target Start/End: Complemental strand, 2167860 - 2167816
Alignment:
| Q |
48 |
atgatgatgatcggttgttggcacttcccaaactccgcaaaatta |
92 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||| ||||||| |
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| T |
2167860 |
atgatgatgatcgatggttggcacttcccaaactccggaaaatta |
2167816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 158
Target Start/End: Complemental strand, 2477203 - 2477095
Alignment:
| Q |
50 |
gatgatgatcggttgttggcacttcccaaactccgcaaaattaatttatcaggtaatttcatcgatcgccaatatgttaactctctctgcaagaactgta |
149 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||| ||| |||||| ||||||||| | ||| | || | || ||| ||||||||||||||| |
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| T |
2477203 |
gatgatgatcaattgttggcgcttcccaaactccgcaagattgctttatctcctaatttcatgggtcgacgatctattgactatctctgcaagaactgcg |
2477104 |
T |
|
| Q |
150 |
accttcttc |
158 |
Q |
| |
|
||||||||| |
|
|
| T |
2477103 |
accttcttc |
2477095 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 105
Target Start/End: Complemental strand, 12126506 - 12126466
Alignment:
| Q |
65 |
ttggcacttcccaaactccgcaaaattaatttatcaggtaa |
105 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||| ||||| |
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|
| T |
12126506 |
ttggcacttcccaaactccgcaagattaatttatctggtaa |
12126466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 155
Target Start/End: Original strand, 5106722 - 5106829
Alignment:
| Q |
48 |
atgatgatgatcggttgttggcacttcccaaactccgcaaaattaatttatcaggtaatttcatcgatcgccaatatgttaactctctctgcaagaactg |
147 |
Q |
| |
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|||||||||||| || ||||||||||||||||||||||| ||| |||||| |||||||| | | | ||||| | ||||| ||| ||||||||||| |
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| T |
5106722 |
atgatgatgatcaattattggcacttcccaaactccgcaagattgcgttatcacgtaatttcctgggtaaccaatctattaaccatctttgcaagaactg |
5106821 |
T |
|
| Q |
148 |
taaccttc |
155 |
Q |
| |
|
| |||||| |
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|
| T |
5106822 |
tgaccttc |
5106829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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