View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15320_low_2 (Length: 590)
Name: NF15320_low_2
Description: NF15320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15320_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 223 - 488
Target Start/End: Original strand, 54233540 - 54233805
Alignment:
| Q |
223 |
atctattttctaatgaagcatcgcatcagtgaaaagttaagctagtttatacgtagttgcgatggttagcaggtaggcgagttagttatgaaaatgtgac |
322 |
Q |
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| T |
54233540 |
atctattttctaatgaagcatcgcatcagtgaaaagttaagctaatttatacgtagttgcaatggttagcaggtaggcgagttagttatgaaaatgtgac |
54233639 |
T |
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| Q |
323 |
aactttggggacaatgtatgaaaataaatgtaagtgttaatttgattaaaagatagattgacaaccgtataaaaatacggtgttagacaacttttagttg |
422 |
Q |
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| T |
54233640 |
aactttggggacaatgtatgaaaataaatgtaagtgttaatttgattaaaagatagattgacaaccgtataaaaatacggtgttagacaacttttagttg |
54233739 |
T |
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| Q |
423 |
tgaaaaaacttttctctattaaaaatttgttttatttttcctcattttcaaacgtttgatcaagta |
488 |
Q |
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| T |
54233740 |
cgaaaaaacttttctctattaaaaatttgttttatttttcctcattttcaaacgtttgatcaagta |
54233805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 21 - 231
Target Start/End: Original strand, 54233178 - 54233388
Alignment:
| Q |
21 |
catgtatgcatctttggtgtgagtccgcgtttaaagaaatgaaaatgggctgactattgtttatgttttatctagagaatctgtattatctaatattagt |
120 |
Q |
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| T |
54233178 |
catgtatgcatctttggtgtgagtccgcgtttaaagaaatgaaaatgggctgactattgtttatgttttatctagagaatctgtattatctaatattagt |
54233277 |
T |
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| Q |
121 |
tgcaacaagaaatcctagtacgtatgatctataacaaaaattaaaagccaatgatgtccatgttttgaactagctgttattattattattgtttgctaat |
220 |
Q |
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| T |
54233278 |
tgcaacaagaaatgctagtacgtatgatctataactaaaattaaaaggcaatgatgtccatgttttgaaccagctgttactattattattgtttgctaat |
54233377 |
T |
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| Q |
221 |
atatctatttt |
231 |
Q |
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| T |
54233378 |
atatctatttt |
54233388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 472 - 590
Target Start/End: Original strand, 54233820 - 54233938
Alignment:
| Q |
472 |
aaacgtttgatcaagtaaaattataagttcatgagtttttatataattatattttttatccaaaatatgttcattctctatttgactaaaaaacctcatt |
571 |
Q |
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| T |
54233820 |
aaacgtttgatcaagtaaaattataagttcatgagtttttatataattatattttttatccaaaatatgttcattctttatttgactaaaaaacctcatt |
54233919 |
T |
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| Q |
572 |
ttttcatctatcagaaaca |
590 |
Q |
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| T |
54233920 |
ttttcatctatcagaaaca |
54233938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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