View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15320_low_3 (Length: 566)
Name: NF15320_low_3
Description: NF15320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15320_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 18 - 376
Target Start/End: Complemental strand, 34639358 - 34639000
Alignment:
| Q |
18 |
ctaagatctcttacattgacatatatggacccttagttaacatgattcaagggcatggaaattttggtgagtaatgcaatcttatcccttgcttggttaa |
117 |
Q |
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| T |
34639358 |
ctaagatctcttacattgacatatatggacccttagttaacatgattcaagggcatggaaattttggtgagtaatgcaatcttatcccttgcttggttaa |
34639259 |
T |
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| Q |
118 |
gatcataaatatcttaattaatttgtgtgtatgtatgttattgtggtagggtttgatgaggttgatcgtggctgttgtggaagtggtttcattgaagcaa |
217 |
Q |
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| T |
34639258 |
gatcataaatatcttaattaatttgtgtgtatgtatgttattgtggtagggtttgatgaggttgatcgtggctgttgtggaagtggtttcattgaagcaa |
34639159 |
T |
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| Q |
218 |
catttatgtgtaatcgtatttcacatgtatgttctgattcatcaaaatatgtcttttgggattcaatacacccgacagagaaggcatatcataacctatt |
317 |
Q |
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| T |
34639158 |
catttatgtgtaatcgtatttcacatgtatgttctgatccatcaaaatatgtcttttgggattcaatacatccgactgagaaggcatatcataacctatt |
34639059 |
T |
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| Q |
318 |
cgtcgcaaatcgccacattcttgatgccctcgtcaacggctaggattcctagctatcca |
376 |
Q |
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| T |
34639058 |
cgtcgcaaatcgccacattcttgatgccctcgtcaacggctaggattcctagctatcca |
34639000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 441 - 554
Target Start/End: Complemental strand, 34638935 - 34638822
Alignment:
| Q |
441 |
gtcgtgtgcatgatagagaaacaaaagacaaaaataaagtggtgaatgaaaccatctttttatatatgaacttatagaagcttcatcattagtataaaag |
540 |
Q |
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| T |
34638935 |
gtcgtgtgtatgatagacaaacaaaagacaaaaataaagtggtgaatgaaaacatccttttatatctgaacttatagaagcttcatcattagcataaaag |
34638836 |
T |
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| Q |
541 |
tcgacattgatgat |
554 |
Q |
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| T |
34638835 |
tcgacattgatgat |
34638822 |
T |
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