View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15320_low_5 (Length: 452)
Name: NF15320_low_5
Description: NF15320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15320_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 435
Target Start/End: Original strand, 3001889 - 3002328
Alignment:
| Q |
1 |
ttgtatgtaatgatatattataataaatgggatagtaatactatttaaaggttgcataaa-----attgctgcagtttcttgtccaaactttatgacttt |
95 |
Q |
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| T |
3001889 |
ttgtatgtaatgatatattatactaaatgggatagtaatactatttaaaggttgcataaatggtaattgctgcagtttcttgtccaaactttatgacttt |
3001988 |
T |
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| Q |
96 |
tgacttgtttttacatagttatcctggagcagacaattctacgacattgactactactcaaggatatcgctcagtaagtagtttaaattaatatattatt |
195 |
Q |
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| T |
3001989 |
tgacttgtttttacatagttatcttggagcagacaattctacgacattgactactactcaaggatatcgctcagtaagtagtttaaattaatatattatt |
3002088 |
T |
|
| Q |
196 |
gtttttgttagtttgtcatcgcatggaatggatagtgaatgttgttttttcacctcagtttgactttctggtttgttatcacatgggatggatagtgaat |
295 |
Q |
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|||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3002089 |
gttttt-ttagtttgccatcgcatggaatggatagtgaatgttgttttttcacctcagtttgactttctggtttgttatcacatgggatggatagtgaat |
3002187 |
T |
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| Q |
296 |
gttgttacttcaaatttctaacaattttttataacgacgtggactttatttcccagcaccaaaccctcggtgcctatttattttgtttaactt-gaggta |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
3002188 |
gttgttacttcaaatttctaacaattttttataacgacgtggactttatttcccagcaccaaaccctcggtgcctatttattttgtttaacttagaggta |
3002287 |
T |
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| Q |
395 |
acatttttgtttatggaaatattagtatctggtgtgagaat |
435 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| |
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| T |
3002288 |
acatctttgtttatggaaatattagtatctggtgtgagaat |
3002328 |
T |
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