View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15321_low_1 (Length: 942)
Name: NF15321_low_1
Description: NF15321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15321_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 551; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 11 - 581
Target Start/End: Original strand, 35834850 - 35835420
Alignment:
| Q |
11 |
caaagggagggtatctgaattagaaatagcatgaaatatagattactagattaagtcaactgaactgttggacttttaaacttctgaggaaatagcctct |
110 |
Q |
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| T |
35834850 |
caaagggagggtatctgaattagaaatagcatgaaatatagattactagattaagtcaactgaactgttggacttttaaacttctgaggaaatagcctct |
35834949 |
T |
|
| Q |
111 |
aatttaatctttcaatgaagagatggattaacaaatagggtaaaacagcgaagaatccttacagagattttaagtgattaagtttcccaagatgaggagt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35834950 |
aatttaatctttcaatgaagagatggattaacaaatagggtaaaacagtgaagaatccttacagagattttaagtgattaagtttcccaagatgaggagt |
35835049 |
T |
|
| Q |
211 |
caatgtcccttccaatgattggccatttaggtccctgcaagaaatagcaagaagatacaaaatcctataagcacaaaatattcaacactgtattcacctc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35835050 |
caatgtcccttccaatgattggccatttaggtccctgcaagaaatagcaagaagatacaaaatcctataagcacaaaatattcaacactgtattcacctc |
35835149 |
T |
|
| Q |
311 |
aatcaaaatggaagctttcttcaaacgtcaagaaccgttacatgaataagtcgtcatgaaaaaataacagcactgtctcactggaaaacttaaaaggagg |
410 |
Q |
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| T |
35835150 |
aatcaaaatggaagctttcttcaaacgtcaagaaccattacgtgtattagtcgtcatgaaaaaataacagcactgtctcactggaaaacttaaaaggagg |
35835249 |
T |
|
| Q |
411 |
aaaccaaaggaacttacaggatttgcactttaccatcaacacaatgaactcccatccacttgcaagggttggaatcatttggattccaatttagtagagc |
510 |
Q |
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| T |
35835250 |
aaaccaaaggaacttacaggatttgcactttaccatcaacacaatgaactcccatccacttgcaagggttggaatcatttggattccaatttagtagagc |
35835349 |
T |
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| Q |
511 |
accatacggatcagaaattattcttacccgaaattcccacaaagcaattcctgcaaagttccattccaatt |
581 |
Q |
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| T |
35835350 |
accatacggatcagaaattattcttacccgaaattcccacaaagcaattcctgcaaagttccattccaatt |
35835420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 645 - 942
Target Start/End: Original strand, 35835484 - 35835781
Alignment:
| Q |
645 |
cattgtaagttgtaaaaggctaattcataaaaatcaccttcatcattcagagaccagcacagtcgaattccccagatacaaatcaatccaatataaattc |
744 |
Q |
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| T |
35835484 |
cattgtaagttgtaaaaggctaattcataaaaatcaccttcatcattcagagaccagcacagtcgaattccccagatacaaatcaatccaatataaattc |
35835583 |
T |
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| Q |
745 |
tgagccataatccaaaccgatcccatatgcattccattgcagtaggaaggcagtggtcgctttggtagaggcgcagatttgtatctctctttataagcta |
844 |
Q |
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| T |
35835584 |
tgagccataatccaaaccgatcccatatgcattccattgcagtaggaaggcagtggtcgctttggtagaggcgcagatttgtatctctctttataagcta |
35835683 |
T |
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| Q |
845 |
gaagctatatgatatgtcaaatcattgtacaaaatttggcaaggtttaactgtaaatagaaacccttaagccttttgagatgaaggtaactaatcaac |
942 |
Q |
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| T |
35835684 |
gaagctatatgatatgtcaaatcattgtacaaaatttggcaaggtttaactgtaaatagaaacccttaagccttttgagatgaaggtaactaatcaac |
35835781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 1e-22; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 166 - 253
Target Start/End: Complemental strand, 4971415 - 4971328
Alignment:
| Q |
166 |
tccttacagagattttaagtgattaagtttcccaagatgaggagtcaatgtcccttccaatgattggccatttaggtccctgcaagaa |
253 |
Q |
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| T |
4971415 |
tccttacagagattttaagtgacttagtttcccaagctcaggagccaatgtcccttccaatgatagcccatttaggtccctacaagaa |
4971328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 166 - 253
Target Start/End: Complemental strand, 4989324 - 4989237
Alignment:
| Q |
166 |
tccttacagagattttaagtgattaagtttcccaagatgaggagtcaatgtcccttccaatgattggccatttaggtccctgcaagaa |
253 |
Q |
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| T |
4989324 |
tccttacagagattttaagtgacttagtttcccaagctcaggagccaatgtcccttccaatgatagcccatttaggtccctacaagaa |
4989237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 413 - 502
Target Start/End: Complemental strand, 4971157 - 4971068
Alignment:
| Q |
413 |
accaaaggaacttacaggatttgcactttaccatcaacacaatgaactcccatccacttgcaagggttggaatcatttggattccaattt |
502 |
Q |
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| T |
4971157 |
accacaggaacttacagcatctgcactttaccatcgacgcagtggacaccaaaccagttgcaagggtcacaatcatttggattccaattt |
4971068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 413 - 502
Target Start/End: Complemental strand, 4989066 - 4988977
Alignment:
| Q |
413 |
accaaaggaacttacaggatttgcactttaccatcaacacaatgaactcccatccacttgcaagggttggaatcatttggattccaattt |
502 |
Q |
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| T |
4989066 |
accacaggaacttacagcatctgcactttaccatcgacgcagtggacaccaaaccagttgcaagggtcacaatcatttggattccaattt |
4988977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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