View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15321_low_2 (Length: 408)
Name: NF15321_low_2
Description: NF15321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15321_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 369; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Original strand, 43255559 - 43255951
Alignment:
| Q |
1 |
tggtaataattataacttacagcgaccaacaagagcaaagaaaagaaaagagcatatatataatacattcatttagtggaacttgagactggtcaagatg |
100 |
Q |
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||||||||||||||||||||| | |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43255559 |
tggtaataattataacttacaacaaccaacaagagcaaagaaaataaaggagcatatatataatacattcatttagtggaacttgagactggtcaagatg |
43255658 |
T |
|
| Q |
101 |
ttgttgttgacagggtcagccaaatgatctaagaggttttggtatggtccaactcctgtaacaagagcttgaataaagtaacccaatattgccaacatag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
43255659 |
ttgttgttgacagggtcagccaaatgatctaagaggttttggtatggtccaactcctgtaacaagagcttgaataaagtaacccaatattgccaacattg |
43255758 |
T |
|
| Q |
201 |
ctaatcttccattcttaacttccttcagctttaattctttcaatgatttctcatctttaccaaaaccaagagggttaaatataggtccaccagggtatgc |
300 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43255759 |
ctaaccttccattcttaacttccttcagctttaattctttcaatgatttctcatctttaccaaaaccaagagggttaaatataggtccaccagggtatgc |
43255858 |
T |
|
| Q |
301 |
tggttcgccggaacctccaagccctttctcaagtcctaagaagtattgttttcccatggaaccaggattgtaccaatcttggagtcttctgtg |
393 |
Q |
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| T |
43255859 |
tggttcgccggaacctccaagccctttctcaagtcctaagaagtattgttttcccatggaaccaggattgtaccaatcttggagtcttctgtg |
43255951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Original strand, 43258825 - 43259217
Alignment:
| Q |
1 |
tggtaataattataacttacagcgaccaacaagagcaaagaaaagaaaagagcatatatataatacattcatttagtggaacttgagactggtcaagatg |
100 |
Q |
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|
||||||||||||||||||||| | |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43258825 |
tggtaataattataacttacaacaaccaacaagagcaaagaaaataaaggagcatatatataatacattcatttagtggaacttgagactggtcaagatg |
43258924 |
T |
|
| Q |
101 |
ttgttgttgacagggtcagccaaatgatctaagaggttttggtatggtccaactcctgtaacaagagcttgaataaagtaacccaatattgccaacatag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
43258925 |
ttgttgttgacagggtcagccaaatgatctaagaggttttggtatggtccaactcctgtaacaagagcttgaataaagtaacccaatattgccaacattg |
43259024 |
T |
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| Q |
201 |
ctaatcttccattcttaacttccttcagctttaattctttcaatgatttctcatctttaccaaaaccaagagggttaaatataggtccaccagggtatgc |
300 |
Q |
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|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43259025 |
ctaaccttccattcttaacttccttcagctttaattccttcaatgatttctcatctttaccaaaaccaagagggttaaatataggtccaccagggtatgc |
43259124 |
T |
|
| Q |
301 |
tggttcgccggaacctccaagccctttctcaagtcctaagaagtattgttttcccatggaaccaggattgtaccaatcttggagtcttctgtg |
393 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
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| T |
43259125 |
tggttcgccggaacctccaagccctttctcaagtcctaagaagtattgttttcccatggagccaggattgtaccaatcttggaatcttctgtg |
43259217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 54 - 357
Target Start/End: Original strand, 43247615 - 43247918
Alignment:
| Q |
54 |
atatatataatacattcatttagtggaacttgagactggtcaagatgttgttgttgacagggtcagccaaatgatctaagaggttttggtatggtccaac |
153 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
43247615 |
atatatataatacattcatttagtggaacttgagactggtcaagatgttgttgtttgaagggtcagccaaatgatttaagaagttttggtatggtccaac |
43247714 |
T |
|
| Q |
154 |
tcctgtaacaagagcttgaataaagtaacccaatattgccaacatagctaatcttccattcttaacttccttcagctttaattctttcaatgatttctca |
253 |
Q |
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|| |||||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
43247715 |
tcttgtaactagagcttgaacaaagtaacccaatattgccaacatagctaaccttccattcttaacttccttcagctttaaatccttcaatgatttctca |
43247814 |
T |
|
| Q |
254 |
tctttaccaaaaccaagagggttaaatataggtccaccagggtatgctggttcgccggaacctccaagccctttctcaagtcctaagaagtattgttttc |
353 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||| ||||||||||||| |
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| T |
43247815 |
tctttaccaaaaccaagagggttaaatataggtccaccagggtatgctggttcaccggaaccgccaagacctttctcaagtcctaaaaagtattgttttc |
43247914 |
T |
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| Q |
354 |
ccat |
357 |
Q |
| |
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|||| |
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| T |
43247915 |
ccat |
43247918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 95 - 190
Target Start/End: Original strand, 43233964 - 43234059
Alignment:
| Q |
95 |
aagatgttgttgttgacagggtcagccaaatgatctaagaggttttggtatggtccaactcctgtaacaagagcttgaataaagtaacccaatatt |
190 |
Q |
| |
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|||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| |||| |
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| T |
43233964 |
aagatgttgttgttgaaagggtcagccaaatgatccaagaggttttggtatggtccaactcctgtaacaagagattgaacaaagtcacccagtatt |
43234059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 54 - 108
Target Start/End: Original strand, 43254090 - 43254144
Alignment:
| Q |
54 |
atatatataatacattcatttagtggaacttgagactggtcaagatgttgttgtt |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43254090 |
atatatataatacattcatttagtggaacttgagactggtcaagatgttgttgtt |
43254144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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