View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15321_low_3 (Length: 396)
Name: NF15321_low_3
Description: NF15321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15321_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 17 - 382
Target Start/End: Complemental strand, 43255602 - 43255249
Alignment:
| Q |
17 |
ttttctttgctcttgttggttgctgtaagttataattattaccnnnnnnnctcaaccaccttttcttcactttcttgtcttggcatcctgtgagcatgtt |
116 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
43255602 |
ttttctttgctcttgttggttgttgtaagttataattattaccaaaaaaactcaaccaccttttcttcactttcttgtcttagcatcctgtgagcatgtt |
43255503 |
T |
|
| Q |
117 |
tcatgatatggccttgtaagaaatgacatttacaagaactagaataattcagcatctttgtgtgttaacttctttgttgcaccccttccttaatggaagt |
216 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43255502 |
tcatgatgtggccttgtaagaaatgacatttacaagaactagaataattcagcatctttgtgtgttaacttctttgttgcaccccttccttaatggaagt |
43255403 |
T |
|
| Q |
217 |
tttccctttctcatgaaaggttccttttgttacttgcttgcccatcccaatccaaattccatcctccttacc----atgtcaccaccatcacatcttttg |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
43255402 |
tttccctttctcatgaaaggttccttttgttacttgcttgcccctcccaatccaaattccatcctccttaccatatatgtcaccaccatcacatcttttg |
43255303 |
T |
|
| Q |
313 |
ctgccaccgatccagatccacaaaacctcttcatttacatgatctttctcttttgctcgaaacacaatct |
382 |
Q |
| |
|
|| | || |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43255302 |
cttgcccc----------------acctcttcatttacatgatctttctcttttgctcgaaacacaatct |
43255249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 17 - 197
Target Start/End: Complemental strand, 43258868 - 43258688
Alignment:
| Q |
17 |
ttttctttgctcttgttggttgctgtaagttataattattaccnnnnnnnctcaaccaccttttcttcactttcttgtcttggcatcctgtgagcatgtt |
116 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||| |
|
|
| T |
43258868 |
ttttctttgctcttgttggttgttgtaagttataattattaccaaaaaaactcaaccaccttttcttcactttcttgtcttagcatcttgtgagcatgtt |
43258769 |
T |
|
| Q |
117 |
tcatgatatggccttgtaagaaatgacatttacaagaactagaataattcagcatctttgtgtgttaacttctttgttgca |
197 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
43258768 |
tcatgatgtggccttgtaagaaatgacatttacaagaactagaaatattcagcatctttgtgtgttaacttctttgttgca |
43258688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 135 - 197
Target Start/End: Complemental strand, 43226066 - 43226006
Alignment:
| Q |
135 |
agaaatgacatttacaagaactagaataattcagcatctttgtgtgttaacttctttgttgca |
197 |
Q |
| |
|
||||||||||| |||||||||||||| |||| | |||| |||||||||||||||||||||| |
|
|
| T |
43226066 |
agaaatgacatgtacaagaactagaaatattcggtatct--gtgtgttaacttctttgttgca |
43226006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University