View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15321_low_4 (Length: 305)

Name: NF15321_low_4
Description: NF15321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15321_low_4
NF15321_low_4
[»] chr4 (5 HSPs)
chr4 (1-290)||(51555482-51555771)
chr4 (9-67)||(35743346-35743404)
chr4 (14-67)||(25487492-25487545)
chr4 (15-67)||(25896867-25896919)
chr4 (9-49)||(29778880-29778920)
[»] chr3 (3 HSPs)
chr3 (17-67)||(30657371-30657421)
chr3 (14-67)||(10540428-10540481)
chr3 (1-67)||(12923276-12923339)
[»] chr8 (5 HSPs)
chr8 (14-63)||(13652298-13652347)
chr8 (14-63)||(13710941-13710990)
chr8 (4-67)||(1664441-1664504)
chr8 (4-67)||(1892159-1892222)
chr8 (2-67)||(6864408-6864473)
[»] chr6 (3 HSPs)
chr6 (26-67)||(7351606-7351647)
chr6 (13-67)||(31774458-31774512)
chr6 (14-67)||(2455892-2455945)
[»] chr1 (3 HSPs)
chr1 (14-67)||(32515376-32515429)
chr1 (18-60)||(15581340-15581382)
chr1 (27-67)||(6292587-6292627)
[»] chr2 (1 HSPs)
chr2 (9-49)||(40667484-40667524)
[»] scaffold0199 (1 HSPs)
scaffold0199 (4-67)||(6882-6945)
[»] chr7 (2 HSPs)
chr7 (13-67)||(24048621-24048675)
chr7 (27-67)||(24363535-24363575)
[»] chr5 (2 HSPs)
chr5 (13-67)||(7907963-7908017)
chr5 (30-67)||(36542221-36542258)


Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 51555771 - 51555482
Alignment:
Q  1 cttatgggcatgtcataagctcttctaaacaatctcataagtgcttatgtgagtagataaactcaaaattgaaagtgaatgaatacctgcttcaataatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51555771 cttatgggcatgtcataagctcttctaaacaatctcataagtgcttatgtgagtagataaactcaaaattgaaagtgaatgaatacctgcttcaataatc 51555672  T
Q  101 ttgtcaaccttggcatcactgatacctttgatttgcaaaagatctttcctaggagtataagcaacagattcaacagtacaaatacccgcatctttaagct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51555671 ttgtcaaccttggcatcactgatacctttgatttgcaaaagatctttcctaggagtataagcaacagattcaacagtacaaatacccgcatctttaagct 51555572  T
Q  201 tcttaatgtcaagtgccgctatacccgatgcctgagaacacaattaaacacagaacaataatcaattgggtcctacatcatcagagaaag 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51555571 tcttaatgtcaagtgccgctatacccgatgcctgagaacacaattaaacacagaacaataatcaattgggtcctacatcatcagagaaag 51555482  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 9 - 67
Target Start/End: Original strand, 35743346 - 35743404
Alignment:
Q  9 catgtcataagctcttctaaacaatctcataagtgcttatgtgagtagataaactcaaa 67  Q
    ||||||||||||||||||||||| ||||| || ||||||| | ||||||||| ||||||    
T  35743346 catgtcataagctcttctaaacagtctcacaaatgcttatattagtagataatctcaaa 35743404  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 25487545 - 25487492
Alignment:
Q  14 cataagctcttctaaacaatctcataagtgcttatgtgagtagataaactcaaa 67  Q
    |||||||||||| ||||||||| | |||||||||||  | ||||||||||||||    
T  25487545 cataagctcttccaaacaatcttacaagtgcttatgctaatagataaactcaaa 25487492  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 25896867 - 25896919
Alignment:
Q  15 ataagctcttctaaacaatctcataagtgcttatgtgagtagataaactcaaa 67  Q
    ||||||||| ||||||| ||||| ||||||| |||  ||||||||||||||||    
T  25896867 ataagctctcctaaacagtctcacaagtgctaatgctagtagataaactcaaa 25896919  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 29778880 - 29778920
Alignment:
Q  9 catgtcataagctcttctaaacaatctcataagtgcttatg 49  Q
    ||||||||||||| ||||||||||||||| ||||| |||||    
T  29778880 catgtcataagcttttctaaacaatctcacaagtgtttatg 29778920  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 30657371 - 30657421
Alignment:
Q  17 aagctcttctaaacaatctcataagtgcttatgtgagtagataaactcaaa 67  Q
    ||||||||| ||||||||||| |||||||||||| ||||||||||||||||    
T  30657371 aagctcttccaaacaatctcaaaagtgcttatgtcagtagataaactcaaa 30657421  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 10540481 - 10540428
Alignment:
Q  14 cataagctcttctaaacaatctcataagtgcttatgtgagtagataaactcaaa 67  Q
    |||||||||| ||||| | ||| |||||||||||||||| ||||||||||||||    
T  10540481 cataagctctcctaaagagtctgataagtgcttatgtgaatagataaactcaaa 10540428  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 12923339 - 12923276
Alignment:
Q  1 cttatgggcatgtcataagctcttctaaacaatctcataagtgcttatgtgagtagataaactcaaa 67  Q
    ||||||| ||||||||||||||| | ||||| ||||    |||||||||| ||||||||||||||||    
T  12923339 cttatggacatgtcataagctctcccaaacagtctcg---gtgcttatgttagtagataaactcaaa 12923276  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 13652298 - 13652347
Alignment:
Q  14 cataagctcttctaaacaatctcataagtgcttatgtgagtagataaact 63  Q
    |||||||||||| |||||| |||| |||||||||||||||||||||||||    
T  13652298 cataagctcttccaaacaacctcacaagtgcttatgtgagtagataaact 13652347  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 63
Target Start/End: Original strand, 13710941 - 13710990
Alignment:
Q  14 cataagctcttctaaacaatctcataagtgcttatgtgagtagataaact 63  Q
    |||||||||||| |||||| |||| |||||||||||||||||||||||||    
T  13710941 cataagctcttccaaacaacctcacaagtgcttatgtgagtagataaact 13710990  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 1664441 - 1664504
Alignment:
Q  4 atgggcatgtcataagctcttctaaacaatctcataagtgcttatgtgagtagataaactcaaa 67  Q
    |||| ||||||||||||||| | ||||| ||||| ||||| |||||  ||||||||||||||||    
T  1664441 atggacatgtcataagctctcccaaacagtctcacaagtgtttatgctagtagataaactcaaa 1664504  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 1892222 - 1892159
Alignment:
Q  4 atgggcatgtcataagctcttctaaacaatctcataagtgcttatgtgagtagataaactcaaa 67  Q
    |||| ||||||||||||||| | ||||||||||| ||||| |||||   |||||||||||||||    
T  1892222 atggacatgtcataagctctgccaaacaatctcacaagtgtttatgacggtagataaactcaaa 1892159  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 6864473 - 6864408
Alignment:
Q  2 ttatgggcatgtcataagctcttctaaacaatctcataagtgcttatgtgagtagataaactcaaa 67  Q
    ||||||||||| |||||||||||| ||||| | || ||||||||||||  | |||||| |||||||    
T  6864473 ttatgggcatgccataagctcttccaaacactttcttaagtgcttatgcaaatagatagactcaaa 6864408  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 7351647 - 7351606
Alignment:
Q  26 taaacaatctcataagtgcttatgtgagtagataaactcaaa 67  Q
    |||||||||||| |||||||||||| ||||||||||||||||    
T  7351647 taaacaatctcacaagtgcttatgtcagtagataaactcaaa 7351606  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 67
Target Start/End: Original strand, 31774458 - 31774512
Alignment:
Q  13 tcataagctcttctaaacaatctcataagtgcttatgtgagtagataaactcaaa 67  Q
    |||| |||||||| ||||| |||||||||||||||||   |||||||||||||||    
T  31774458 tcatgagctcttccaaacagtctcataagtgcttatgccggtagataaactcaaa 31774512  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 67
Target Start/End: Original strand, 2455892 - 2455945
Alignment:
Q  14 cataagctcttctaaacaatctcataagtgcttatgtgagtagataaactcaaa 67  Q
    |||||||||||||||||||||||  |||||||||||   |||||||| ||||||    
T  2455892 cataagctcttctaaacaatctcgcaagtgcttatgccggtagataagctcaaa 2455945  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 67
Target Start/End: Complemental strand, 32515429 - 32515376
Alignment:
Q  14 cataagctcttctaaacaatctcataagtgcttatgtgagtagataaactcaaa 67  Q
    |||||||||| | ||||| ||||| |||||||||||| ||||||||||||||||    
T  32515429 cataagctctcccaaacagtctcacaagtgcttatgttagtagataaactcaaa 32515376  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 15581340 - 15581382
Alignment:
Q  18 agctcttctaaacaatctcataagtgcttatgtgagtagataa 60  Q
    |||||||| ||||||||||| |||||||||||| |||||||||    
T  15581340 agctcttccaaacaatctcacaagtgcttatgtcagtagataa 15581382  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 67
Target Start/End: Original strand, 6292587 - 6292627
Alignment:
Q  27 aaacaatctcataagtgcttatgtgagtagataaactcaaa 67  Q
    ||||||||||| |||||||||||| ||||||||| ||||||    
T  6292587 aaacaatctcaaaagtgcttatgtcagtagataagctcaaa 6292627  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 40667484 - 40667524
Alignment:
Q  9 catgtcataagctcttctaaacaatctcataagtgcttatg 49  Q
    ||||||||||||||||| ||||||||||| |||||||||||    
T  40667484 catgtcataagctcttccaaacaatctcacaagtgcttatg 40667524  T

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Target: scaffold0199 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 67
Target Start/End: Original strand, 6882 - 6945
Alignment:
Q  4 atgggcatgtcataagctcttctaaacaatctcataagtgcttatgtgagtagataaactcaaa 67  Q
    |||| ||||||||||||||| | ||||| ||||| ||||| |||||  ||||||||||||||||    
T  6882 atggacatgtcataagctctcccaaacagtctcacaagtgtttatgctagtagataaactcaaa 6945  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 67
Target Start/End: Original strand, 24048621 - 24048675
Alignment:
Q  13 tcataagctcttctaaacaatctcataagtgcttatgtgagtagataaactcaaa 67  Q
    ||||||||||||| ||||| |||  ||||| ||||||| ||||||||||||||||    
T  24048621 tcataagctcttccaaacagtcttttaagtacttatgtcagtagataaactcaaa 24048675  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 67
Target Start/End: Complemental strand, 24363575 - 24363535
Alignment:
Q  27 aaacaatctcataagtgcttatgtgagtagataaactcaaa 67  Q
    |||| ||||||||||||||||||  ||||||||||||||||    
T  24363575 aaactatctcataagtgcttatgctagtagataaactcaaa 24363535  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 67
Target Start/End: Original strand, 7907963 - 7908017
Alignment:
Q  13 tcataagctcttctaaacaatctcataagtgcttatgtgagtagataaactcaaa 67  Q
    ||||||| ||||| ||||| ||||||||||| |||||| | ||||||||||||||    
T  7907963 tcataagttcttccaaacagtctcataagtgtttatgttattagataaactcaaa 7908017  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 67
Target Start/End: Complemental strand, 36542258 - 36542221
Alignment:
Q  30 caatctcataagtgcttatgtgagtagataaactcaaa 67  Q
    ||||||||||||||||||||| ||||||||| ||||||    
T  36542258 caatctcataagtgcttatgttagtagataagctcaaa 36542221  T

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