View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15321_low_5 (Length: 285)
Name: NF15321_low_5
Description: NF15321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15321_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 12 - 256
Target Start/End: Original strand, 50268845 - 50269088
Alignment:
| Q |
12 |
atcatcataacccccaaaactcaacgtaggaatcatcataacctccaaaactcttcaaataataatttatttannnnnnnncagaaaaagaataataacc |
111 |
Q |
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| T |
50268845 |
atcatcataacctccaaaactcaagttaggaatcatcataacctccaaaactcttcaaataataatttatttatttttttt-agaaaaagaataataacc |
50268943 |
T |
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| Q |
112 |
cagttggaggaaggggccaaggatgatgaatcttgaaaacaaaaaggatcttgagatgattttgttggaagaatgaacctttgatttgaatttgaaagaa |
211 |
Q |
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| T |
50268944 |
cagttggaggaaggggcgaaggatgatgaatcttgaaaaaagaaatgatgttgagatgattttgttgaaagaatgaacctttgatttgaatttgaaagaa |
50269043 |
T |
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| Q |
212 |
aggaaaaaacagagaagagggttacgcatgtttttgttcagaaaa |
256 |
Q |
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| T |
50269044 |
aggaaaaaatagagaagagtgttacgcatgtttttgttcagaaaa |
50269088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 159 - 242
Target Start/End: Complemental strand, 46966941 - 46966854
Alignment:
| Q |
159 |
atcttgagatgattttgttggaagaatgaacctttgatttgaatttga----aagaaaggaaaaaacagagaagagggttacgcatgt |
242 |
Q |
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| T |
46966941 |
atcttgaaatgattttgttgaaagagtgaaccttcgatttgaatttgattgaaagaaaggaaaaaacagagaagagggttacgcatgt |
46966854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 27 - 78
Target Start/End: Complemental strand, 46967119 - 46967068
Alignment:
| Q |
27 |
aaaactcaacgtaggaatcatcataacctccaaaactcttcaaataataatt |
78 |
Q |
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| T |
46967119 |
aaaactcaacctaggaatcatcataacctacaaaacttttcagataataatt |
46967068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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