View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15321_low_7 (Length: 250)
Name: NF15321_low_7
Description: NF15321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15321_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 4483540 - 4483781
Alignment:
| Q |
1 |
attactggatttattcacacccataacagttaaaaccgttatataaagaaacaaaaatgtagccacaaactcagcaatccctgccctatagaaagaccat |
100 |
Q |
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| T |
4483540 |
attactggatttattcacacccatcacagttaaaaccgttatataaagaaacaaaaatgtagccacaaactcagcaatccctgccctatagaaagaccat |
4483639 |
T |
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| Q |
101 |
gatgataactctcgatgctcaaataaaggtgctgaaggtgcctctttatagtctttagcatcattgtcttgagattgagcagcagttcctattggttggt |
200 |
Q |
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| T |
4483640 |
gatgataactctccatgctcaaataaaggcgctgaaggtgcctctttatagtctttagcatcattgtcttgagattgagcagcagttcctattggttggt |
4483739 |
T |
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| Q |
201 |
tttctctatacttgtttgctcctactcttacatcttcatctc |
242 |
Q |
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| T |
4483740 |
tttctctatacttgtttgctcctactcttacatcttcatctc |
4483781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 102
Target Start/End: Original strand, 35230952 - 35231037
Alignment:
| Q |
17 |
acacccataacagttaaaaccgttatataaagaaacaaaaatgtagccacaaactcagcaatccctgccctatagaaagaccatga |
102 |
Q |
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| T |
35230952 |
acacccataacagtcaaaacagtgatataaagaaaaaggaaagtagcaacgaactcagctatcccagctctgtagaaagaccatga |
35231037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 12 - 153
Target Start/End: Original strand, 2650186 - 2650327
Alignment:
| Q |
12 |
tattcacacccataacagttaaaaccgttatataaagaaacaaaaatgtagccacaaactcagcaatccctgccctatagaaagaccatgatgataactc |
111 |
Q |
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||||||||||||| ||||| || || || || ||||| ||||| || || || ||||| ||||||||||| || ||||| || |||||||| ||||| |
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| T |
2650186 |
tattcacacccatcacagtcaagacagtgatgtaaaggaacaagaaagttgcaacaaattcagcaatcccagctctataaaatgaccatgacttcaactc |
2650285 |
T |
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| Q |
112 |
tcgatgctcaaataaaggtgctgaaggtgcctctttatagtc |
153 |
Q |
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|| ||||||| |||||||||| ||||| ||||| ||||| |
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| T |
2650286 |
tcctggctcaaacaaaggtgctggtggtgcttctttgtagtc |
2650327 |
T |
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