View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15322_high_15 (Length: 412)
Name: NF15322_high_15
Description: NF15322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15322_high_15 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 138 - 400
Target Start/End: Original strand, 47829079 - 47829344
Alignment:
| Q |
138 |
gagaaggaagaaactacttgcacatatatatgtatatt---attgttaacattaatgaatgtttccaggggcttagtttatgtattttaatttgattgta |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47829079 |
gagaaggaagaaactacttgcacatatatatgtatattattattgttaacattaatgaatgtttccaggggcttagtttatgtattttaatttgattgta |
47829178 |
T |
|
| Q |
235 |
ttgtatctactactgtttatggaaagaaaataaaacgtaatttgcttgtgtattatttggttctatggctttgagtgctttgcacaccaatagaatatga |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47829179 |
ttgtatctactactgtttatggaaagaaaataaaacgtaatttgcttgtgtattatttggttctatggctttgagtgctttgcacaccaatagaatatga |
47829278 |
T |
|
| Q |
335 |
gaatagaagtgagaacggaattaatcaacactactcttctccccaaactcacacaccgattatatt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47829279 |
gaatagaagtgagaacggaattaatcaacactactcttctccccaaactcacacaccgattatatt |
47829344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 47828872 - 47829012
Alignment:
| Q |
1 |
tgtcactagtactaaaccaattattatcactacggtagaagggaaattactaattgggttttctagttatcatggaaaaaataatcagaagccaattaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
47828872 |
tgtcactagtactaaaccaattattatcactacggtagaagggaaattactaattggcttttctagttatcatggaaagaataatcagaagccaattaat |
47828971 |
T |
|
| Q |
101 |
aatttttcttctaaaatnnnnnnntgatatatttgcagaga |
141 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| |
|
|
| T |
47828972 |
aatttttcttctaaaataaaaaaatgatatatttgcagaga |
47829012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University