View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15322_high_17 (Length: 390)
Name: NF15322_high_17
Description: NF15322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15322_high_17 |
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Alignment Details
Target: chr5 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 14 - 375
Target Start/End: Complemental strand, 36558693 - 36558332
Alignment:
| Q |
14 |
agatgaggccaaaagcttgccaaaggtaagttgaggatgaacaatctctaatacaacgaagaagtgattcctcagaaggagcaaagttccgatgttttat |
113 |
Q |
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| T |
36558693 |
agatgaggccaaaagcttgccaaaggtaagttgaggatgaacaatctctaatacaacgacgaagtgattcctcagaaggagcaaagttccgatgatttat |
36558594 |
T |
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| Q |
114 |
aagagacatggtaggggacatggttgttataagccagcctaacaagaaatttgattttttctggtagacgaaggcgccaaatccaagaccaacatatggt |
213 |
Q |
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| T |
36558593 |
aagagacatggtaggggacatggttgttataagccagcctaacaagaaatttgattttttctggtagacgaaggtgccaaatccaagaccaagatatggt |
36558494 |
T |
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| Q |
214 |
ggcggcatttgccccatgctgttacaagaaccaagaaaaaccagctctagttcttgcaactctttcaattacaagtgaaatctattgtaatatttcctta |
313 |
Q |
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| T |
36558493 |
ggcggcatttgccccatgcttttacaagaaccaagaaaaaccagctctagttcttgcaactctttcaattacaagtgaaatctattgtaatatttcctta |
36558394 |
T |
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| Q |
314 |
tacaaattcaattcttttcttttttcagattcattttcctatctttaatttagaaataagac |
375 |
Q |
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| T |
36558393 |
tacaaattcaattcttttcttttttcagattcattttcctatctttaatttagaaataagac |
36558332 |
T |
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