View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15322_high_23 (Length: 358)
Name: NF15322_high_23
Description: NF15322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15322_high_23 |
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Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 17 - 353
Target Start/End: Original strand, 4247532 - 4247868
Alignment:
| Q |
17 |
gttttcattcatacctatttttccttttcagtccttatatccattcggaggcgtcagtttcagcaagtaaaagaaaccattcctataattcttaatgtat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4247532 |
gttttcattcatacctatttttccttttcagtccttatatccatccggaggcgtcagtttcagcaagtaaaagaaaccattcctataattcttaatgtat |
4247631 |
T |
|
| Q |
117 |
tgaaggctgtatctttgaagtcagacgaagaactcgataatgtctttgaccgagctgttgagattgcaaattctatatatgaagtttgcgataagttggt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4247632 |
tgaaggctgtatctttgaagtcagacgaagaactcgataatgtctttgaccgagctgttgagattgcaaattctatatatgaagtttgcgataagttggt |
4247731 |
T |
|
| Q |
217 |
ggtctgtctattataaaacatttcatcttttcctttgttgggagaacataaattattgttatattttcaattttttgccgacattttttcacttaacagg |
316 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4247732 |
ggtctgtctattataaaacatttcatcttttcatttgttgggagaacataaattattgttatattttcaattttttgccgacattttttcacttaacagg |
4247831 |
T |
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| Q |
317 |
atgatgatgctgcaagggagaagttccgatctctgct |
353 |
Q |
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|||| |||||||||||||||||||||||||||||||| |
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| T |
4247832 |
atgaggatgctgcaagggagaagttccgatctctgct |
4247868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 8e-43; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 17 - 311
Target Start/End: Complemental strand, 2402541 - 2402245
Alignment:
| Q |
17 |
gttttcattcatacctatttttcc-ttttcagtccttatatccattcggaggcgtcagtttcagcaagtaaaagaaaccattcctataattcttaatgta |
115 |
Q |
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|||||||| ||||||||||||| | |||||||||||||| || | | || |||||||||| ||||||||| || | ||||| ||||||||| | |
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| T |
2402541 |
gttttcatacatacctattttttcattttcagtccttatctctacccagatgcgtcagtttgagcaagtaagagcagttgttccttcgattcttaattca |
2402442 |
T |
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| Q |
116 |
ttgaaggctgtatctttgaagtcagacgaagaactcgataatgtctttgaccgagctgttgagattgcaaattctatatatgaagtttgcgataagttgg |
215 |
Q |
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||||||| |||| |||| || |||| ||| | | ||| ||||||||||| || ||||||||||| ||||||||||||||||||||||| |||||||| |
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| T |
2402441 |
ttgaaggttgtacatttggagacagataaagcaattgatgatgtctttgacagaactgttgagatttcaaattctatatatgaagtttgcagtaagttgg |
2402342 |
T |
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| Q |
216 |
tggtctgtctattataaaacatttcatcttttcctttgttgggagaacataaattattgttatattttcaa-ttttttgccgacattttttcactta |
311 |
Q |
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|||||| ||||| |||||||||||||| ||| |||| || ||||||||||||||||| | |||||||| |||||||| |||||||||||||||| |
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| T |
2402341 |
tggtcttcctattttaaaacatttcatccttttcttttttatgagaacataaattattgattgattttcaacttttttgctgacattttttcactta |
2402245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 277 - 353
Target Start/End: Original strand, 2798447 - 2798523
Alignment:
| Q |
277 |
atattttcaattttttgccgacattttttcacttaacaggatgatgatgctgcaagggagaagttccgatctctgct |
353 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2798447 |
atattttcaattttttgccgacattttttcacttaacaggatgatgatgctgcaagggagaagttccgatctctgct |
2798523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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