View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15322_high_29 (Length: 323)
Name: NF15322_high_29
Description: NF15322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15322_high_29 |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 113 - 310
Target Start/End: Complemental strand, 34791528 - 34791331
Alignment:
| Q |
113 |
caacgcgtaatattcatgaaatagcacatcttaatcaaatctacgaagatatacaataattgaaaatggatactgaagacaagatgtaatcatttatgca |
212 |
Q |
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| T |
34791528 |
caacgcgtaatattcatgaaatagcacatcttaatcaaatctacgaagatatacaataattgaaaatggatactgaagacaagatgtaatcatttatgca |
34791429 |
T |
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| Q |
213 |
acatttactaggcaggatgactagctctactaaaaatcgcgtggtgtgtcaaaactgcggtgctgagggcctaccacattgtagtcttcatttttcct |
310 |
Q |
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| T |
34791428 |
acatttaccaggcaggatgactagctctactaaaaatcgcgtggtgtgtcaaaactgcggtgctgagggcctaccacattgtagtcttcatttttcct |
34791331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 34791624 - 34791574
Alignment:
| Q |
17 |
attcacaagtgaaaagtaatatatcatcaccaaggatcatatgcatagcag |
67 |
Q |
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| T |
34791624 |
attcacaagtgaaaagtaatatatcatcaccaaggatcatatgcatggcag |
34791574 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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