View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15322_high_3 (Length: 576)

Name: NF15322_high_3
Description: NF15322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15322_high_3
NF15322_high_3
[»] chr4 (31 HSPs)
chr4 (17-568)||(10164389-10164944)
chr4 (73-141)||(43093534-43093602)
chr4 (91-170)||(18513221-18513300)
chr4 (77-141)||(45615424-45615488)
chr4 (486-528)||(13307886-13307928)
chr4 (468-522)||(18513231-18513285)
chr4 (485-522)||(37496719-37496756)
chr4 (482-519)||(47492397-47492434)
chr4 (99-147)||(9988702-9988750)
chr4 (92-136)||(50216696-50216740)
chr4 (467-522)||(3947755-3947810)
chr4 (93-132)||(10517999-10518038)
chr4 (467-522)||(12895105-12895160)
chr4 (482-517)||(22799897-22799932)
chr4 (98-141)||(25400848-25400891)
chr4 (111-142)||(31901285-31901316)
chr4 (103-141)||(683064-683102)
chr4 (490-528)||(10634999-10635037)
chr4 (485-519)||(11797635-11797669)
chr4 (475-517)||(25400861-25400903)
chr4 (486-528)||(44362675-44362717)
chr4 (102-139)||(8457936-8457973)
chr4 (88-141)||(21732369-21732422)
chr4 (485-522)||(21945518-21945555)
chr4 (76-141)||(22596989-22597054)
chr4 (100-141)||(28890768-28890809)
chr4 (92-137)||(39439216-39439261)
chr4 (113-141)||(5075367-5075395)
chr4 (485-517)||(13117449-13117481)
chr4 (106-138)||(29388378-29388410)
chr4 (86-138)||(34093961-34094013)
[»] chr8 (19 HSPs)
chr8 (91-141)||(32691743-32691793)
chr8 (81-153)||(31681827-31681899)
chr8 (467-517)||(22600549-22600599)
chr8 (482-522)||(42874537-42874577)
chr8 (102-211)||(3066053-3066163)
chr8 (485-527)||(31119097-31119139)
chr8 (73-154)||(15140362-15140443)
chr8 (472-528)||(10497810-10497866)
chr8 (98-138)||(24758532-24758572)
chr8 (485-528)||(26915247-26915290)
chr8 (485-528)||(34073985-34074028)
chr8 (102-160)||(25161236-25161294)
chr8 (486-528)||(27733856-27733898)
chr8 (104-141)||(8917545-8917582)
chr8 (89-154)||(31548289-31548354)
chr8 (485-522)||(31548300-31548337)
chr8 (109-160)||(4337260-4337309)
chr8 (91-150)||(10002163-10002223)
chr8 (108-160)||(22600546-22600598)
[»] chr3 (14 HSPs)
chr3 (77-141)||(19323457-19323521)
chr3 (485-528)||(14338490-14338533)
chr3 (99-156)||(13290678-13290735)
chr3 (102-141)||(1502585-1502624)
chr3 (493-536)||(12704672-12704714)
chr3 (101-156)||(13164956-13165011)
chr3 (102-149)||(30367620-30367667)
chr3 (472-522)||(14832114-14832164)
chr3 (485-522)||(10954967-10955004)
chr3 (486-519)||(13005444-13005477)
chr3 (74-159)||(18267996-18268081)
chr3 (485-522)||(20503480-20503517)
chr3 (90-135)||(25074788-25074833)
chr3 (105-141)||(4946213-4946249)
[»] chr1 (25 HSPs)
chr1 (77-160)||(26777367-26777451)
chr1 (482-527)||(24462274-24462319)
chr1 (88-141)||(26462654-26462707)
chr1 (76-135)||(41500721-41500780)
chr1 (77-135)||(41510899-41510957)
chr1 (89-150)||(19637766-19637827)
chr1 (482-518)||(28170400-28170436)
chr1 (482-522)||(30847724-30847764)
chr1 (472-527)||(18946028-18946083)
chr1 (482-517)||(26390137-26390172)
chr1 (435-470)||(44126814-44126849)
chr1 (91-141)||(13709186-13709236)
chr1 (79-141)||(21057771-21057833)
chr1 (80-150)||(31667414-31667484)
chr1 (482-528)||(46748912-46748958)
chr1 (92-141)||(18556035-18556084)
chr1 (483-528)||(34184677-34184722)
chr1 (485-522)||(38078668-38078705)
chr1 (482-518)||(17007965-17008001)
chr1 (94-138)||(23605132-23605176)
chr1 (119-155)||(32638457-32638493)
chr1 (444-472)||(32638537-32638565)
chr1 (480-528)||(40686760-40686808)
chr1 (482-522)||(42386401-42386440)
chr1 (97-141)||(43609827-43609871)
[»] chr7 (27 HSPs)
chr7 (485-528)||(1885582-1885625)
chr7 (100-141)||(10893878-10893919)
chr7 (485-528)||(5937428-5937471)
chr7 (89-140)||(18750874-18750925)
chr7 (99-141)||(650527-650569)
chr7 (99-141)||(21238825-21238867)
chr7 (99-141)||(43160492-43160534)
chr7 (483-528)||(2144544-2144589)
chr7 (485-517)||(25956465-25956497)
chr7 (89-141)||(37775980-37776032)
chr7 (485-528)||(44317293-44317336)
chr7 (91-153)||(3095433-3095495)
chr7 (492-522)||(7241008-7241038)
chr7 (91-161)||(16341496-16341566)
chr7 (91-141)||(31924426-31924476)
chr7 (482-528)||(37820089-37820135)
chr7 (485-522)||(7438721-7438758)
chr7 (100-141)||(10893356-10893397)
chr7 (485-518)||(36013805-36013838)
chr7 (491-527)||(2143866-2143902)
chr7 (88-140)||(17930460-17930512)
chr7 (102-170)||(30737133-30737200)
chr7 (93-157)||(31808502-31808566)
chr7 (482-522)||(37775997-37776037)
chr7 (486-522)||(44172898-44172934)
chr7 (97-141)||(44172899-44172943)
chr7 (482-522)||(46550795-46550835)
[»] chr5 (25 HSPs)
chr5 (480-521)||(38784822-38784863)
chr5 (81-141)||(36611449-36611509)
chr5 (88-139)||(645329-645380)
chr5 (485-528)||(21319952-21319995)
chr5 (78-156)||(18592060-18592138)
chr5 (87-141)||(27239541-27239595)
chr5 (80-150)||(27718979-27719049)
chr5 (488-528)||(30080511-30080551)
chr5 (103-163)||(41558641-41558701)
chr5 (92-160)||(43208264-43208332)
chr5 (485-528)||(10010563-10010606)
chr5 (487-522)||(15294946-15294981)
chr5 (467-522)||(31084338-31084393)
chr5 (102-141)||(35129971-35130010)
chr5 (69-160)||(38749553-38749644)
chr5 (485-519)||(19167583-19167617)
chr5 (480-522)||(24906303-24906345)
chr5 (472-522)||(39698556-39698606)
chr5 (468-522)||(41558644-41558698)
chr5 (485-522)||(8420042-8420079)
chr5 (88-141)||(28296325-28296378)
chr5 (90-150)||(2577180-2577240)
chr5 (77-168)||(9878013-9878105)
chr5 (485-517)||(10009846-10009878)
chr5 (482-522)||(27253300-27253340)
[»] chr6 (26 HSPs)
chr6 (437-528)||(19369826-19369924)
chr6 (485-528)||(6751889-6751932)
chr6 (467-522)||(9024165-9024220)
chr6 (467-522)||(12696339-12696394)
chr6 (102-160)||(9024166-9024224)
chr6 (486-528)||(10031579-10031621)
chr6 (485-562)||(28715271-28715347)
chr6 (69-137)||(10760855-10760922)
chr6 (472-515)||(785449-785492)
chr6 (485-528)||(1334670-1334713)
chr6 (468-515)||(7942277-7942324)
chr6 (98-141)||(34057961-34058004)
chr6 (107-149)||(4343283-4343325)
chr6 (99-141)||(10335385-10335427)
chr6 (77-131)||(10421721-10421774)
chr6 (73-135)||(20662944-20663006)
chr6 (485-519)||(26402687-26402721)
chr6 (99-141)||(29449689-29449731)
chr6 (91-141)||(30537500-30537550)
chr6 (469-526)||(602653-602710)
chr6 (77-138)||(8623191-8623252)
chr6 (485-522)||(10157999-10158036)
chr6 (89-138)||(34625732-34625781)
chr6 (482-522)||(4859117-4859157)
chr6 (99-135)||(10522958-10522994)
chr6 (482-522)||(31384935-31384975)
[»] chr2 (16 HSPs)
chr2 (485-528)||(43586012-43586055)
chr2 (482-528)||(14450799-14450845)
chr2 (92-141)||(16630796-16630845)
chr2 (485-517)||(13501085-13501117)
chr2 (86-141)||(6626482-6626537)
chr2 (90-141)||(18622414-18622465)
chr2 (486-517)||(24067273-24067304)
chr2 (88-135)||(31026692-31026739)
chr2 (102-153)||(35198228-35198279)
chr2 (78-140)||(1119579-1119641)
chr2 (485-527)||(44984657-44984699)
chr2 (111-140)||(12933353-12933382)
chr2 (482-519)||(37402088-37402125)
chr2 (482-522)||(18570987-18571027)
chr2 (89-141)||(22131263-22131315)
chr2 (482-522)||(43065573-43065613)
[»] scaffold0314 (1 HSPs)
scaffold0314 (485-528)||(8957-9000)
[»] scaffold0002 (1 HSPs)
scaffold0002 (101-156)||(141977-142032)
[»] scaffold0223 (1 HSPs)
scaffold0223 (472-522)||(20187-20237)
[»] scaffold0110 (1 HSPs)
scaffold0110 (90-159)||(28849-28918)
[»] scaffold0022 (1 HSPs)
scaffold0022 (77-154)||(99879-99956)
[»] scaffold0024 (1 HSPs)
scaffold0024 (468-528)||(18098-18158)


Alignment Details
Target: chr4 (Bit Score: 385; Significance: 0; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 17 - 568
Target Start/End: Original strand, 10164389 - 10164944
Alignment:
Q  17 aatgacactatagtgttttatcataaatcatatctttatagattcaccatccgaagcactgacactgagatgtcgacaccgatagtaatttaagaaaatg 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |  |||||||| ||||||| ||||| |||||| ||||||||||||||||||    
T  10164389 aatgacactatagtgttttatcataaatcatatctttatagattcaccctatgaagcactaacactgacatgtcaacaccggtagtaatttaagaaaatg 10164488  T
Q  117 gcataattgaatgtaatcacatgtgcccgtgtcgtgtcggacacagacatgtgtggacatcggacatgccattgatcagaagtgtcggtgctaca-agga 215  Q
    |||||||||||||||||||||| | || ||||| ||||||||| ||||||| ||||||| |||||||||||||||| |||||||||||||||| | ||||    
T  10164489 gcataattgaatgtaatcacattttccggtgtcttgtcggacaaagacatgcgtggacaccggacatgccattgattagaagtgtcggtgctatagagga 10164588  T
Q  216 tcattcaccgttgatattttcgaaaaagatcaaaacattgctaacagaataca--gaggggtaatctagtaacctatacacaaaaagagctctaagaacc 313  Q
    ||||||||   |||||||||||||||||||||||| |||  ||||| | ||||  |||||||||||||  || |||||||||||||||||||||||||||    
T  10164589 tcattcacttgtgatattttcgaaaaagatcaaaatattattaacaaagtacacagaggggtaatctaaaaatctatacacaaaaagagctctaagaacc 10164688  T
Q  314 gccatatacaaactaagccatcagtttaatactctcagattactacatcaatcataaagaaaacaaggacatagatttgtct-atagtacaaacaaatat 412  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | | ||| |||||||||    
T  10164689 gccatatacaaactaagccatcagtttaatactctcagattactacatcaatcataaagaaaacaaggatatagatttgtctcagattaccaacaaatat 10164788  T
Q  413 acacacatccttcttaattacaacctctgttgcatcaacacttctaattgaaggcgtgtccgacactatactgacacttgtgattacattgaattatgtc 512  Q
    || ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10164789 acgcacatccttattaattacaacctctgttgcatcaacacttctaactgaaggcgtgtccgacactatactgacacttgtgattacattgaattatgtc 10164888  T
Q  513 attttttcaagatttttatccgtgacagtgtcagtgccgtgtcccgtgtctgtgct 568  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  10164889 attttttcaagatttttatccgtgacggtgtcagtgtcgtgtcccgtgtctgtgct 10164944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 73 - 141
Target Start/End: Complemental strand, 43093602 - 43093534
Alignment:
Q  73 cactgacactgagatgtcgacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtg 141  Q
    |||||||||||| | ||| ||||| ||| |||||| | |||||||||||||||||||||||||||||||    
T  43093602 cactgacactgacacgtcaacacccataataatttgaaaaaatggcataattgaatgtaatcacatgtg 43093534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 91 - 170
Target Start/End: Complemental strand, 18513300 - 18513221
Alignment:
Q  91 gacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtgcccgtgtcgtgtcggacacagacatgtgt 170  Q
    |||||||||| |||||| |||||||| ||||||| |||||||||| ||||| | |||| ||||||||||| ||| |||||    
T  18513300 gacaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgtcagtgttgtgtcggacaccgacgtgtgt 18513221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 77 - 141
Target Start/End: Complemental strand, 45615488 - 45615424
Alignment:
Q  77 gacactgagatgtcgacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtg 141  Q
    |||||| | |||| || |||| |||||||||||||||||| |||||||||| |||||||||||||    
T  45615488 gacactcacatgttgagaccggtagtaatttaagaaaatgacataattgaacgtaatcacatgtg 45615424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 486 - 528
Target Start/End: Complemental strand, 13307928 - 13307886
Alignment:
Q  486 acacttgtgattacattgaattatgtcattttttcaagatttt 528  Q
    |||||||||||||||||||||||||||||||| |||| |||||    
T  13307928 acacttgtgattacattgaattatgtcattttctcaaaatttt 13307886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 468 - 522
Target Start/End: Original strand, 18513231 - 18513285
Alignment:
Q  468 gtgtccgacactatactgacacttgtgattacattgaattatgtcattttttcaa 522  Q
    ||||||||||| | |||||||| | ||||||||||||||||||||||||| ||||    
T  18513231 gtgtccgacacaacactgacacatatgattacattgaattatgtcattttctcaa 18513285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 485 - 522
Target Start/End: Complemental strand, 37496756 - 37496719
Alignment:
Q  485 gacacttgtgattacattgaattatgtcattttttcaa 522  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  37496756 gacacttgtgattacattgaattatgtcattttctcaa 37496719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 482 - 519
Target Start/End: Complemental strand, 47492434 - 47492397
Alignment:
Q  482 actgacacttgtgattacattgaattatgtcatttttt 519  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  47492434 actgacacttgtgattacattaaattatgtcatttttt 47492397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 99 - 147
Target Start/End: Complemental strand, 9988750 - 9988702
Alignment:
Q  99 tagtaatttaagaaaatggcataattgaatgtaatcacatgtgcccgtg 147  Q
    |||| |||| |||||||| |||||||||||||||||||||||| |||||    
T  9988750 tagttatttgagaaaatgacataattgaatgtaatcacatgtgtccgtg 9988702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 92 - 136
Target Start/End: Complemental strand, 50216740 - 50216696
Alignment:
Q  92 acaccgatagtaatttaagaaaatggcataattgaatgtaatcac 136  Q
    |||||| |||| ||||||||||||| |||||||||||||||||||    
T  50216740 acaccgttagtgatttaagaaaatgacataattgaatgtaatcac 50216696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 467 - 522
Target Start/End: Original strand, 3947755 - 3947810
Alignment:
Q  467 cgtgtccgacactatactgacacttgtgattacattgaattatgtcattttttcaa 522  Q
    |||||||||||| | |||||||||||| |||||| |||||||||  ||||||||||    
T  3947755 cgtgtccgacacgacactgacacttgtaattacactgaattatgcgattttttcaa 3947810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 93 - 132
Target Start/End: Complemental strand, 10518038 - 10517999
Alignment:
Q  93 caccgatagtaatttaagaaaatggcataattgaatgtaa 132  Q
    ||||| |||||||||||||||||| |||||||||||||||    
T  10518038 caccggtagtaatttaagaaaatgacataattgaatgtaa 10517999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 467 - 522
Target Start/End: Original strand, 12895105 - 12895160
Alignment:
Q  467 cgtgtccgacactatactgacacttgtgattacattgaattatgtcattttttcaa 522  Q
    |||||||||||| | || ||||||||| ||||| ||||||||||| ||||||||||    
T  12895105 cgtgtccgacacgacaccgacacttgtaattactttgaattatgtgattttttcaa 12895160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 482 - 517
Target Start/End: Original strand, 22799897 - 22799932
Alignment:
Q  482 actgacacttgtgattacattgaattatgtcatttt 517  Q
    |||||||| |||||||||||||||||||||||||||    
T  22799897 actgacacgtgtgattacattgaattatgtcatttt 22799932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 141
Target Start/End: Original strand, 25400848 - 25400891
Alignment:
Q  98 atagtaatttaagaaaatggcataattgaatgtaatcacatgtg 141  Q
    ||||||||||||||||||| ||||||| ||||| ||||||||||    
T  25400848 atagtaatttaagaaaatgacataattaaatgttatcacatgtg 25400891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 111 - 142
Target Start/End: Complemental strand, 31901316 - 31901285
Alignment:
Q  111 aaaatggcataattgaatgtaatcacatgtgc 142  Q
    ||||||||||||||||||||||||||||||||    
T  31901316 aaaatggcataattgaatgtaatcacatgtgc 31901285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 103 - 141
Target Start/End: Original strand, 683064 - 683102
Alignment:
Q  103 aatttaagaaaatggcataattgaatgtaatcacatgtg 141  Q
    ||||| |||||||| ||||||||||||||||||||||||    
T  683064 aatttgagaaaatgacataattgaatgtaatcacatgtg 683102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 490 - 528
Target Start/End: Complemental strand, 10635037 - 10634999
Alignment:
Q  490 ttgtgattacattgaattatgtcattttttcaagatttt 528  Q
    ||||||| ||||||||||||||||||||||||| |||||    
T  10635037 ttgtgataacattgaattatgtcattttttcaaaatttt 10634999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 485 - 519
Target Start/End: Original strand, 11797635 - 11797669
Alignment:
Q  485 gacacttgtgattacattgaattatgtcatttttt 519  Q
    |||||||||||||||||| ||||||||||||||||    
T  11797635 gacacttgtgattacattaaattatgtcatttttt 11797669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 475 - 517
Target Start/End: Complemental strand, 25400903 - 25400861
Alignment:
Q  475 acactatactgacacttgtgattacattgaattatgtcatttt 517  Q
    ||||||||||||||| |||||| ||||| ||||||||||||||    
T  25400903 acactatactgacacatgtgataacatttaattatgtcatttt 25400861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 486 - 528
Target Start/End: Complemental strand, 44362717 - 44362675
Alignment:
Q  486 acacttgtgattacattgaattatgtcattttttcaagatttt 528  Q
    ||||||||||||||||| |||||||||||||| |||| |||||    
T  44362717 acacttgtgattacattaaattatgtcattttctcaaaatttt 44362675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 102 - 139
Target Start/End: Original strand, 8457936 - 8457973
Alignment:
Q  102 taatttaagaaaatggcataattgaatgtaatcacatg 139  Q
    |||||| |||||||| ||||||||||||||||||||||    
T  8457936 taatttgagaaaatgacataattgaatgtaatcacatg 8457973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 141
Target Start/End: Complemental strand, 21732422 - 21732369
Alignment:
Q  88 gtcgacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtg 141  Q
    |||||||||| ||| ||||| | |||||| ||||||||| ||||||||||||||    
T  21732422 gtcgacaccggtaggaatttgaaaaaatgacataattgattgtaatcacatgtg 21732369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 485 - 522
Target Start/End: Complemental strand, 21945555 - 21945518
Alignment:
Q  485 gacacttgtgattacattgaattatgtcattttttcaa 522  Q
    ||||||||| |||||| |||||||||||||||||||||    
T  21945555 gacacttgtaattacactgaattatgtcattttttcaa 21945518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 141
Target Start/End: Complemental strand, 22597054 - 22596989
Alignment:
Q  76 tgacactgagatgtcgacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtg 141  Q
    ||||| ||| || |||||||| ||| |||||| ||||||| |||||||| || |||||||||||||    
T  22597054 tgacaatgacatatcgacaccaataataatttgagaaaattgcataattcaacgtaatcacatgtg 22596989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 141
Target Start/End: Original strand, 28890768 - 28890809
Alignment:
Q  100 agtaatttaagaaaatggcataattgaatgtaatcacatgtg 141  Q
    ||||||||||||||||  |||||||||||| |||||||||||    
T  28890768 agtaatttaagaaaataacataattgaatgcaatcacatgtg 28890809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 39439216 - 39439261
Alignment:
Q  92 acaccgatagtaatttaagaaaatggcataattgaatgtaatcaca 137  Q
    |||||| ||||||||||||||||||  | |||||||||||||||||    
T  39439216 acaccggtagtaatttaagaaaatgtaaaaattgaatgtaatcaca 39439261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 113 - 141
Target Start/End: Complemental strand, 5075395 - 5075367
Alignment:
Q  113 aatggcataattgaatgtaatcacatgtg 141  Q
    |||||||||||||||||||||||||||||    
T  5075395 aatggcataattgaatgtaatcacatgtg 5075367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 485 - 517
Target Start/End: Complemental strand, 13117481 - 13117449
Alignment:
Q  485 gacacttgtgattacattgaattatgtcatttt 517  Q
    ||||||||||||||||||||||| |||||||||    
T  13117481 gacacttgtgattacattgaattttgtcatttt 13117449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 106 - 138
Target Start/End: Complemental strand, 29388410 - 29388378
Alignment:
Q  106 ttaagaaaatggcataattgaatgtaatcacat 138  Q
    ||||||||||| |||||||||||||||||||||    
T  29388410 ttaagaaaatgacataattgaatgtaatcacat 29388378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 86 - 138
Target Start/End: Complemental strand, 34094013 - 34093961
Alignment:
Q  86 atgtcgacaccgatagtaatttaagaaaatggcataattgaatgtaatcacat 138  Q
    ||||||||| | ||| |||||| |||||||| |||||||||||| ||||||||    
T  34094013 atgtcgacaaccataataatttgagaaaatgtcataattgaatgcaatcacat 34093961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 91 - 141
Target Start/End: Original strand, 32691743 - 32691793
Alignment:
Q  91 gacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtg 141  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  32691743 gacaccggtagtaatttaagaaaatgacataattgaatgtaatcacatgtg 32691793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 81 - 153
Target Start/End: Complemental strand, 31681899 - 31681827
Alignment:
Q  81 ctgagatgtcgacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtgcccgtgtcgtgt 153  Q
    |||| ||||||||  || |||||||||||||||||| |||||||||||| ||||||||||| | |||||||||    
T  31681899 ctgacatgtcgacgtcgctagtaatttaagaaaatgacataattgaatgaaatcacatgtgtcggtgtcgtgt 31681827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 467 - 517
Target Start/End: Complemental strand, 22600599 - 22600549
Alignment:
Q  467 cgtgtccgacactatactgacacttgtgattacattgaattatgtcatttt 517  Q
    |||||||||||| |||||| |||||||||||| ||||||||||||||||||    
T  22600599 cgtgtccgacacgatactggcacttgtgattatattgaattatgtcatttt 22600549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 482 - 522
Target Start/End: Complemental strand, 42874577 - 42874537
Alignment:
Q  482 actgacacttgtgattacattgaattatgtcattttttcaa 522  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  42874577 actgacacttgtgattacattgaattatgtcattttctcaa 42874537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 211
Target Start/End: Original strand, 3066053 - 3066163
Alignment:
Q  102 taatttaagaaaatggcataattgaatgtaatcacatgtgcccgtgtcgtgtcggacacagacatgtgt-ggacatcggacatgccattgatcagaagtg 200  Q
    |||||| |||||||||  |||||||||||||| ||||||| | || ||||||| |  || |||||||||  |||| |||||||||| | ||||||| |||    
T  3066053 taatttgagaaaatggattaattgaatgtaataacatgtgtcggtatcgtgtcagggactgacatgtgtcagacaccggacatgccttagatcagaggtg 3066152  T
Q  201 tcggtgctaca 211  Q
    || ||||||||    
T  3066153 tcagtgctaca 3066163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 485 - 527
Target Start/End: Complemental strand, 31119139 - 31119097
Alignment:
Q  485 gacacttgtgattacattgaattatgtcattttttcaagattt 527  Q
    ||||||||||||||||||||||||||||||||| |||| ||||    
T  31119139 gacacttgtgattacattgaattatgtcattttctcaaaattt 31119097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 73 - 154
Target Start/End: Complemental strand, 15140443 - 15140362
Alignment:
Q  73 cactgacactgagatgtcgacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtgcccgtgtcgtgtc 154  Q
    |||||||| ||| ||||| |||||| ||||||||| ||||| | | |||||||||||||| |||| ||| | ||||||||||    
T  15140443 cactgacattgacatgtcaacaccggtagtaatttgagaaatttgaataattgaatgtaaccacacgtgtcggtgtcgtgtc 15140362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 472 - 528
Target Start/End: Original strand, 10497810 - 10497866
Alignment:
Q  472 ccgacactatactgacacttgtgattacattgaattatgtcattttttcaagatttt 528  Q
    ||||||| ||||||||||||||||||||||  |||||||| ||||| |||| |||||    
T  10497810 ccgacacgatactgacacttgtgattacatcaaattatgttattttctcaaaatttt 10497866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 24758572 - 24758532
Alignment:
Q  98 atagtaatttaagaaaatggcataattgaatgtaatcacat 138  Q
    ||||||||||||||||||| ||||||||||| |||||||||    
T  24758572 atagtaatttaagaaaatgacataattgaatataatcacat 24758532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 485 - 528
Target Start/End: Original strand, 26915247 - 26915290
Alignment:
Q  485 gacacttgtgattacattgaattatgtcattttttcaagatttt 528  Q
    |||||||||||||||||| |||||||||||||| |||| |||||    
T  26915247 gacacttgtgattacattaaattatgtcattttctcaaaatttt 26915290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 485 - 528
Target Start/End: Original strand, 34073985 - 34074028
Alignment:
Q  485 gacacttgtgattacattgaattatgtcattttttcaagatttt 528  Q
    ||||||| |||||||||| ||||||||||||||||||| |||||    
T  34073985 gacacttatgattacattaaattatgtcattttttcaaaatttt 34074028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 102 - 160
Target Start/End: Original strand, 25161236 - 25161294
Alignment:
Q  102 taatttaagaaaatggcataattgaatgtaatcacatgtgcccgtgtcgtgtcggacac 160  Q
    |||||| | ||||||| |||||||||||| |||||||||| | |||||||||| |||||    
T  25161236 taatttgaaaaaatggtataattgaatgtcatcacatgtgtcagtgtcgtgtcagacac 25161294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 486 - 528
Target Start/End: Complemental strand, 27733898 - 27733856
Alignment:
Q  486 acacttgtgattacattgaattatgtcattttttcaagatttt 528  Q
    |||||||||||||||||||||||| ||||||| |||| |||||    
T  27733898 acacttgtgattacattgaattatatcattttctcaaaatttt 27733856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 104 - 141
Target Start/End: Complemental strand, 8917582 - 8917545
Alignment:
Q  104 atttaagaaaatggcataattgaatgtaatcacatgtg 141  Q
    ||||||||||||| |||||||||||||||||| |||||    
T  8917582 atttaagaaaatgacataattgaatgtaatcagatgtg 8917545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 154
Target Start/End: Complemental strand, 31548354 - 31548289
Alignment:
Q  89 tcgacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtgcccgtgtcgtgtc 154  Q
    |||||||||||| | |||| | |||||| ||||||| |||||||||||||||| | ||||| ||||    
T  31548354 tcgacaccgataattatttgataaaatgacataattcaatgtaatcacatgtgtcggtgtcatgtc 31548289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 485 - 522
Target Start/End: Original strand, 31548300 - 31548337
Alignment:
Q  485 gacacttgtgattacattgaattatgtcattttttcaa 522  Q
    ||||| ||||||||||||||||||||||||||| ||||    
T  31548300 gacacatgtgattacattgaattatgtcattttatcaa 31548337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 109 - 160
Target Start/End: Original strand, 4337260 - 4337309
Alignment:
Q  109 agaaaatggcataattgaatgtaatcacatgtgcccgtgtcgtgtcggacac 160  Q
    |||||||  |||||||||||||||||||||||  ||||||||||| ||||||    
T  4337260 agaaaatttcataattgaatgtaatcacatgt--ccgtgtcgtgttggacac 4337309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 91 - 150
Target Start/End: Complemental strand, 10002223 - 10002163
Alignment:
Q  91 gacaccgatagtaattt-aagaaaatggcataattgaatgtaatcacatgtgcccgtgtcg 150  Q
    |||||||||| |||||| || |||||| ||||||| |||||||||||||||| | ||||||    
T  10002223 gacaccgataataatttgaaaaaaatgacataatttaatgtaatcacatgtgtcggtgtcg 10002163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 22600546 - 22600598
Alignment:
Q  108 aagaaaatggcataattgaatgtaatcacatgtgcccgtgtcgtgtcggacac 160  Q
    ||||||||| ||||||| ||| |||||||| ||||| || |||||||||||||    
T  22600546 aagaaaatgacataattcaatataatcacaagtgccagtatcgtgtcggacac 22600598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 77 - 141
Target Start/End: Complemental strand, 19323521 - 19323457
Alignment:
Q  77 gacactgagatgtcgacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtg 141  Q
    |||||| | |||||||||| ||||||||||| |||||||| ||||||||||| ||||||||||||    
T  19323521 gacactaacatgtcgacactgatagtaatttgagaaaatgacataattgaatttaatcacatgtg 19323457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 485 - 528
Target Start/End: Original strand, 14338490 - 14338533
Alignment:
Q  485 gacacttgtgattacattgaattatgtcattttttcaagatttt 528  Q
    |||| ||||||||||||||||||||||||||||||||| |||||    
T  14338490 gacatttgtgattacattgaattatgtcattttttcaaaatttt 14338533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 99 - 156
Target Start/End: Original strand, 13290678 - 13290735
Alignment:
Q  99 tagtaatttaagaaaatggcataattgaatgtaatcacatgtgcccgtgtcgtgtcgg 156  Q
    |||||| ||||||||||| ||||||| || ||||||||||||| | ||||||||||||    
T  13290678 tagtaacttaagaaaatgacataattaaaagtaatcacatgtgtcagtgtcgtgtcgg 13290735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 141
Target Start/End: Original strand, 1502585 - 1502624
Alignment:
Q  102 taatttaagaaaatggcataattgaatgtaatcacatgtg 141  Q
    |||| |||||||||| ||||||||||||||||||||||||    
T  1502585 taatctaagaaaatgacataattgaatgtaatcacatgtg 1502624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 493 - 536
Target Start/End: Original strand, 12704672 - 12704714
Alignment:
Q  493 tgattacattgaattatgtcattttttcaagatttttatccgtg 536  Q
    |||||||||||||||||||||||||||||| ||| |||||||||    
T  12704672 tgattacattgaattatgtcattttttcaa-attattatccgtg 12704714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 156
Target Start/End: Original strand, 13164956 - 13165011
Alignment:
Q  101 gtaatttaagaaaatggcataattgaatgtaatcacatgtgcccgtgtcgtgtcgg 156  Q
    |||| ||||||||||| ||||||| || ||||||||||||| | ||||||||||||    
T  13164956 gtaacttaagaaaatgacataattaaaagtaatcacatgtgtcagtgtcgtgtcgg 13165011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 149
Target Start/End: Complemental strand, 30367667 - 30367620
Alignment:
Q  102 taatttaagaaaatggcataattgaatgtaatcacatgtgcccgtgtc 149  Q
    ||||||||||||||| |||||||||||||||||| ||||  |||||||    
T  30367667 taatttaagaaaatgacataattgaatgtaatcaaatgtttccgtgtc 30367620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 472 - 522
Target Start/End: Complemental strand, 14832164 - 14832114
Alignment:
Q  472 ccgacactatactgacacttgtgattacattgaattatgtcattttttcaa 522  Q
    ||||||| | |||||||||||| |||||||||| |||||| ||||||||||    
T  14832164 ccgacacgacactgacacttgtaattacattgagttatgtgattttttcaa 14832114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 485 - 522
Target Start/End: Complemental strand, 10955004 - 10954967
Alignment:
Q  485 gacacttgtgattacattgaattatgtcattttttcaa 522  Q
    |||||||||||||||| |||||||||| ||||||||||    
T  10955004 gacacttgtgattacactgaattatgtgattttttcaa 10954967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 486 - 519
Target Start/End: Complemental strand, 13005477 - 13005444
Alignment:
Q  486 acacttgtgattacattgaattatgtcatttttt 519  Q
    ||||||||||||| ||||||||||||||||||||    
T  13005477 acacttgtgattatattgaattatgtcatttttt 13005444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 159
Target Start/End: Complemental strand, 18268081 - 18267996
Alignment:
Q  74 actgacactgagatgtcgacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtgcccgtgtcgtgtcggaca 159  Q
    ||||| ||||| ||||| |||| |||| |||||| ||||||||   |||||||| ||||||||||||| | |||| |||| |||||    
T  18268081 actgaaactgacatgtcaacactgataataatttgagaaaatgaattaattgaacgtaatcacatgtgtcggtgttgtgttggaca 18267996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 485 - 522
Target Start/End: Complemental strand, 20503517 - 20503480
Alignment:
Q  485 gacacttgtgattacattgaattatgtcattttttcaa 522  Q
    ||||||||| |||||| |||||||||||||||||||||    
T  20503517 gacacttgtaattacactgaattatgtcattttttcaa 20503480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 135
Target Start/End: Original strand, 25074788 - 25074833
Alignment:
Q  90 cgacaccgatagtaatttaagaaaatggcataattgaatgtaatca 135  Q
    ||||||||||| |||||| |||||||| ||||||||| ||||||||    
T  25074788 cgacaccgataataatttgagaaaatgacataattgagtgtaatca 25074833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 105 - 141
Target Start/End: Complemental strand, 4946249 - 4946213
Alignment:
Q  105 tttaagaaaatggcataattgaatgtaatcacatgtg 141  Q
    ||||||||||||  |||||||||||||||||||||||    
T  4946249 tttaagaaaatgatataattgaatgtaatcacatgtg 4946213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 77 - 160
Target Start/End: Complemental strand, 26777451 - 26777367
Alignment:
Q  77 gacactgagatgtcgacaccgatagtaattt-aagaaaatggcataattgaatgtaatcacatgtgcccgtgtcgtgtcggacac 160  Q
    |||||||||| ||| ||||||||| |||||| || |||||| | ||||||||||||||||||||||   ||||||||||||||||    
T  26777451 gacactgagaagtcaacaccgataataatttgaaaaaaatgacttaattgaatgtaatcacatgtgtgggtgtcgtgtcggacac 26777367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 482 - 527
Target Start/End: Original strand, 24462274 - 24462319
Alignment:
Q  482 actgacacttgtgattacattgaattatgtcattttttcaagattt 527  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||    
T  24462274 actgaaacttgtgattacattgaattatgtcattttttcaaaattt 24462319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 88 - 141
Target Start/End: Complemental strand, 26462707 - 26462654
Alignment:
Q  88 gtcgacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtg 141  Q
    |||||||| |||| |||||||||||||||  |||||||||||||||||||||||    
T  26462707 gtcgacactgataataatttaagaaaatgaaataattgaatgtaatcacatgtg 26462654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 76 - 135
Target Start/End: Complemental strand, 41500780 - 41500721
Alignment:
Q  76 tgacactgagatgtcgacaccgatagtaatttaagaaaatggcataattgaatgtaatca 135  Q
    ||||||||| |||| ||||||  ||||||||||||||||||  |||||||||||||||||    
T  41500780 tgacactgacatgttgacaccactagtaatttaagaaaatgatataattgaatgtaatca 41500721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 77 - 135
Target Start/End: Complemental strand, 41510957 - 41510899
Alignment:
Q  77 gacactgagatgtcgacaccgatagtaatttaagaaaatggcataattgaatgtaatca 135  Q
    |||||||| |||| ||||||  ||||||||||||||||||  |||||||||||||||||    
T  41510957 gacactgacatgttgacaccactagtaatttaagaaaatgatataattgaatgtaatca 41510899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 89 - 150
Target Start/End: Original strand, 19637766 - 19637827
Alignment:
Q  89 tcgacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtgcccgtgtcg 150  Q
    |||||||||||| ||||||||||||||| ||| ||| |||||||||| ||||| | ||||||    
T  19637766 tcgacaccgataataatttaagaaaatgacattattcaatgtaatcatatgtgtcggtgtcg 19637827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 482 - 518
Target Start/End: Complemental strand, 28170436 - 28170400
Alignment:
Q  482 actgacacttgtgattacattgaattatgtcattttt 518  Q
    |||||||||||| ||||||||||||||||||||||||    
T  28170436 actgacacttgttattacattgaattatgtcattttt 28170400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 482 - 522
Target Start/End: Original strand, 30847724 - 30847764
Alignment:
Q  482 actgacacttgtgattacattgaattatgtcattttttcaa 522  Q
    |||||||| | ||||||||||||||||||||||||||||||    
T  30847724 actgacacatatgattacattgaattatgtcattttttcaa 30847764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 472 - 527
Target Start/End: Original strand, 18946028 - 18946083
Alignment:
Q  472 ccgacactatactgacacttgtgattacattgaattatgtcattttttcaagattt 527  Q
    |||||| || ||| ||||| |||||||||||||||||||||||||| |||| ||||    
T  18946028 ccgacaatacactcacactcgtgattacattgaattatgtcattttctcaaaattt 18946083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 482 - 517
Target Start/End: Original strand, 26390137 - 26390172
Alignment:
Q  482 actgacacttgtgattacattgaattatgtcatttt 517  Q
    ||||||||||||||||||||| ||||||||||||||    
T  26390137 actgacacttgtgattacattcaattatgtcatttt 26390172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 470
Target Start/End: Original strand, 44126814 - 44126849
Alignment:
Q  435 acctctgttgcatcaacacttctaattgaaggcgtg 470  Q
    |||||||||||| |||||||||||||||||||||||    
T  44126814 acctctgttgcaccaacacttctaattgaaggcgtg 44126849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 141
Target Start/End: Original strand, 13709186 - 13709236
Alignment:
Q  91 gacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtg 141  Q
    ||||| |||||| ||||||||||||| || ||||||||||||||| |||||    
T  13709186 gacactgatagtgatttaagaaaatgacaaaattgaatgtaatcagatgtg 13709236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 79 - 141
Target Start/End: Original strand, 21057771 - 21057833
Alignment:
Q  79 cactgagatgtcgacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtg 141  Q
    |||||| | |||||||||| || |||||| |||||||  ||||||||||||||||| ||||||    
T  21057771 cactgacacgtcgacaccgctaataattttagaaaataacataattgaatgtaatcgcatgtg 21057833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 80 - 150
Target Start/End: Original strand, 31667414 - 31667484
Alignment:
Q  80 actgagatgtcgacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtgcccgtgtcg 150  Q
    ||||| ||||| |||| | || |||||| |||||||| ||||||| |||||||||||||||| | ||||||    
T  31667414 actgacatgtcaacactggtaataattttagaaaatgacataattaaatgtaatcacatgtgtcggtgtcg 31667484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 528
Target Start/End: Original strand, 46748912 - 46748958
Alignment:
Q  482 actgacacttgtgattacattgaattatgtcattttttcaagatttt 528  Q
    ||||||| |||||||||||||||| |||||| ||||||||| |||||    
T  46748912 actgacatttgtgattacattgaactatgtcgttttttcaaaatttt 46748958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 92 - 141
Target Start/End: Complemental strand, 18556084 - 18556035
Alignment:
Q  92 acaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtg 141  Q
    |||||| || |||||||| |||||| ||||||||| ||||||||||||||    
T  18556084 acaccggtaataatttaataaaatgacataattgactgtaatcacatgtg 18556035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 483 - 528
Target Start/End: Complemental strand, 34184722 - 34184677
Alignment:
Q  483 ctgacacttgtgattacattgaattatgtcattttttcaagatttt 528  Q
    ||||||| ||||||||||||||||||| | ||||| ||||||||||    
T  34184722 ctgacacatgtgattacattgaattatattattttctcaagatttt 34184677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 485 - 522
Target Start/End: Original strand, 38078668 - 38078705
Alignment:
Q  485 gacacttgtgattacattgaattatgtcattttttcaa 522  Q
    ||||||||| ||||||||||||||||| ||||||||||    
T  38078668 gacacttgtaattacattgaattatgtgattttttcaa 38078705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 482 - 518
Target Start/End: Original strand, 17007965 - 17008001
Alignment:
Q  482 actgacacttgtgattacattgaattatgtcattttt 518  Q
    ||||||||||||||||| |||||||||||| ||||||    
T  17007965 actgacacttgtgattatattgaattatgtaattttt 17008001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 94 - 138
Target Start/End: Complemental strand, 23605176 - 23605132
Alignment:
Q  94 accgatagtaatttaagaaaatggcataattgaatgtaatcacat 138  Q
    |||||||||||||| |||||||  || ||||||||||||||||||    
T  23605176 accgatagtaatttgagaaaataacaaaattgaatgtaatcacat 23605132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 119 - 155
Target Start/End: Original strand, 32638457 - 32638493
Alignment:
Q  119 ataattgaatgtaatcacatgtgcccgtgtcgtgtcg 155  Q
    ||||||||||||||||||||||| | |||||||||||    
T  32638457 ataattgaatgtaatcacatgtgtcagtgtcgtgtcg 32638493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 444 - 472
Target Start/End: Complemental strand, 32638565 - 32638537
Alignment:
Q  444 gcatcaacacttctaattgaaggcgtgtc 472  Q
    |||||||||||||||||||||||||||||    
T  32638565 gcatcaacacttctaattgaaggcgtgtc 32638537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 480 - 528
Target Start/End: Original strand, 40686760 - 40686808
Alignment:
Q  480 atactgacacttgtgattacattgaattatgtcattttttcaagatttt 528  Q
    |||| ||||||| ||||||||||||||||| ||||||| |||| |||||    
T  40686760 ataccgacacttatgattacattgaattatatcattttatcaaaatttt 40686808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 482 - 522
Target Start/End: Original strand, 42386401 - 42386440
Alignment:
Q  482 actgacacttgtgattacattgaattatgtcattttttcaa 522  Q
    |||||| |||||||||||||||||||||| |||||||||||    
T  42386401 actgacccttgtgattacattgaattatg-cattttttcaa 42386440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 43609871 - 43609827
Alignment:
Q  97 gatagtaatttaagaaaatggcataattgaatgtaatcacatgtg 141  Q
    |||| |||||| |||||||  ||||||||||||||||||||||||    
T  43609871 gataataatttgagaaaataacataattgaatgtaatcacatgtg 43609827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 485 - 528
Target Start/End: Complemental strand, 1885625 - 1885582
Alignment:
Q  485 gacacttgtgattacattgaattatgtcattttttcaagatttt 528  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  1885625 gacacttgtgattacattgaattatgtcattttttcaaaatttt 1885582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 100 - 141
Target Start/End: Complemental strand, 10893919 - 10893878
Alignment:
Q  100 agtaatttaagaaaatggcataattgaatgtaatcacatgtg 141  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  10893919 agtaatttaagaaaatgacataattgaatgtaatcacatgtg 10893878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 485 - 528
Target Start/End: Original strand, 5937428 - 5937471
Alignment:
Q  485 gacacttgtgattacattgaattatgtcattttttcaagatttt 528  Q
    ||||||||||||||||||||||||||||||||| |||| |||||    
T  5937428 gacacttgtgattacattgaattatgtcattttctcaaaatttt 5937471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 89 - 140
Target Start/End: Original strand, 18750874 - 18750925
Alignment:
Q  89 tcgacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgt 140  Q
    |||||| || || ||||||||||||||| |||||||||||||||||||||||    
T  18750874 tcgacaacggtaataatttaagaaaatgacataattgaatgtaatcacatgt 18750925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 99 - 141
Target Start/End: Original strand, 650527 - 650569
Alignment:
Q  99 tagtaatttaagaaaatggcataattgaatgtaatcacatgtg 141  Q
    |||||||||||||||||| |||||||||||| |||||||||||    
T  650527 tagtaatttaagaaaatgacataattgaatgcaatcacatgtg 650569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 99 - 141
Target Start/End: Original strand, 21238825 - 21238867
Alignment:
Q  99 tagtaatttaagaaaatggcataattgaatgtaatcacatgtg 141  Q
    |||||||||||||||||| || |||||||||||||||||||||    
T  21238825 tagtaatttaagaaaatgtcaaaattgaatgtaatcacatgtg 21238867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 99 - 141
Target Start/End: Original strand, 43160492 - 43160534
Alignment:
Q  99 tagtaatttaagaaaatggcataattgaatgtaatcacatgtg 141  Q
    |||||||||||||||||  ||||||||||||||||||||||||    
T  43160492 tagtaatttaagaaaataacataattgaatgtaatcacatgtg 43160534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 483 - 528
Target Start/End: Original strand, 2144544 - 2144589
Alignment:
Q  483 ctgacacttgtgattacattgaattatgtcattttttcaagatttt 528  Q
    ||||||| ||||||||||||||||||||||||||| |||| |||||    
T  2144544 ctgacacgtgtgattacattgaattatgtcattttctcaaaatttt 2144589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 485 - 517
Target Start/End: Complemental strand, 25956497 - 25956465
Alignment:
Q  485 gacacttgtgattacattgaattatgtcatttt 517  Q
    |||||||||||||||||||||||||||||||||    
T  25956497 gacacttgtgattacattgaattatgtcatttt 25956465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 89 - 141
Target Start/End: Original strand, 37775980 - 37776032
Alignment:
Q  89 tcgacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtg 141  Q
    ||||||||  ||||||||| |||||||| ||||||| ||||||||||||||||    
T  37775980 tcgacaccagtagtaatttgagaaaatgacataattaaatgtaatcacatgtg 37776032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 485 - 528
Target Start/End: Original strand, 44317293 - 44317336
Alignment:
Q  485 gacacttgtgattacattgaattatgtcattttttcaagatttt 528  Q
    ||||||| ||||||||||||||||||||||||||| || |||||    
T  44317293 gacacttatgattacattgaattatgtcatttttttaaaatttt 44317336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 153
Target Start/End: Original strand, 3095433 - 3095495
Alignment:
Q  91 gacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtgcccgtgtcgtgt 153  Q
    ||||| ||||||||||||| ||||||||||| |||||| |||||| || || | |||||||||    
T  3095433 gacacggatagtaatttaaaaaaatggcatatttgaatataatcatatatgtcggtgtcgtgt 3095495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 492 - 522
Target Start/End: Original strand, 7241008 - 7241038
Alignment:
Q  492 gtgattacattgaattatgtcattttttcaa 522  Q
    |||||||||||||||||||||||||||||||    
T  7241008 gtgattacattgaattatgtcattttttcaa 7241038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 161
Target Start/End: Original strand, 16341496 - 16341566
Alignment:
Q  91 gacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtgcccgtgtcgtgtcggacaca 161  Q
    ||||| |||| |||||| |||||||  ||||||| | |||||| | ||||||| |||||||||||||||||    
T  16341496 gacactgataataatttgagaaaatcacataattaagtgtaattatatgtgccggtgtcgtgtcggacaca 16341566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 141
Target Start/End: Original strand, 31924426 - 31924476
Alignment:
Q  91 gacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtg 141  Q
    |||||||||| |||||||||||||| | | |||||||| ||||||||||||    
T  31924426 gacaccgataataatttaagaaaatagaacaattgaatataatcacatgtg 31924476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 482 - 528
Target Start/End: Complemental strand, 37820135 - 37820089
Alignment:
Q  482 actgacacttgtgattacattgaattatgtcattttttcaagatttt 528  Q
    ||||||||||| ||||||||| |||||||| |||||||||| |||||    
T  37820135 actgacacttgcgattacattaaattatgttattttttcaaaatttt 37820089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 485 - 522
Target Start/End: Complemental strand, 7438758 - 7438721
Alignment:
Q  485 gacacttgtgattacattgaattatgtcattttttcaa 522  Q
    ||||||||| ||||||||||||||||| ||||||||||    
T  7438758 gacacttgtaattacattgaattatgtgattttttcaa 7438721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 100 - 141
Target Start/End: Complemental strand, 10893397 - 10893356
Alignment:
Q  100 agtaatttaagaaaatggcataattgaatgtaatcacatgtg 141  Q
    |||||||| |||||||| ||||||||||||||||| ||||||    
T  10893397 agtaatttgagaaaatgacataattgaatgtaatcgcatgtg 10893356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 485 - 518
Target Start/End: Original strand, 36013805 - 36013838
Alignment:
Q  485 gacacttgtgattacattgaattatgtcattttt 518  Q
    ||||| ||||||||||||||||||||||||||||    
T  36013805 gacacgtgtgattacattgaattatgtcattttt 36013838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 491 - 527
Target Start/End: Original strand, 2143866 - 2143902
Alignment:
Q  491 tgtgattacattgaattatgtcattttttcaagattt 527  Q
    ||||||||||||||||||||||||||| |||| ||||    
T  2143866 tgtgattacattgaattatgtcattttctcaaaattt 2143902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 88 - 140
Target Start/End: Original strand, 17930460 - 17930512
Alignment:
Q  88 gtcgacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgt 140  Q
    ||||||||| ||| ||||||||||||||| ||| ||| ||||| |||||||||    
T  17930460 gtcgacaccaatactaatttaagaaaatgacatcattcaatgtcatcacatgt 17930512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 102 - 170
Target Start/End: Complemental strand, 30737200 - 30737133
Alignment:
Q  102 taatttaagaaaatggcataattgaatgtaatcacatgtgcccgtgtcgtgtcggacacagacatgtgt 170  Q
    ||||||||||||||| ||||| ||||||||||| |||||| |  ||| ||||||||||  |||||||||    
T  30737200 taatttaagaaaatgacataactgaatgtaatc-catgtgtcattgttgtgtcggacatggacatgtgt 30737133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 93 - 157
Target Start/End: Complemental strand, 31808566 - 31808502
Alignment:
Q  93 caccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtgcccgtgtcgtgtcgga 157  Q
    |||||||| |||||| |||||||| || || | ||||||||||||||||   |||||||||||||    
T  31808566 caccgataataatttgagaaaatgacacaagtcaatgtaatcacatgtgttggtgtcgtgtcgga 31808502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 482 - 522
Target Start/End: Complemental strand, 37776037 - 37775997
Alignment:
Q  482 actgacacttgtgattacattgaattatgtcattttttcaa 522  Q
    |||||||| |||||||||||| |||||||||||||| ||||    
T  37776037 actgacacatgtgattacatttaattatgtcattttctcaa 37775997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 486 - 522
Target Start/End: Original strand, 44172898 - 44172934
Alignment:
Q  486 acacttgtgattacattgaattatgtcattttttcaa 522  Q
    |||| ||||||||||||||||||||||||||| ||||    
T  44172898 acacatgtgattacattgaattatgtcattttctcaa 44172934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 44172943 - 44172899
Alignment:
Q  97 gatagtaatttaagaaaatggcataattgaatgtaatcacatgtg 141  Q
    |||| |||||| |||||||| ||||||| ||||||||||||||||    
T  44172943 gataataatttgagaaaatgacataattcaatgtaatcacatgtg 44172899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 482 - 522
Target Start/End: Original strand, 46550795 - 46550835
Alignment:
Q  482 actgacacttgtgattacattgaattatgtcattttttcaa 522  Q
    |||||||| |||||||||| | |||||||||||||||||||    
T  46550795 actgacacatgtgattacactcaattatgtcattttttcaa 46550835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 480 - 521
Target Start/End: Complemental strand, 38784863 - 38784822
Alignment:
Q  480 atactgacacttgtgattacattgaattatgtcattttttca 521  Q
    |||||||||||||||||||||||||||||| |||||||||||    
T  38784863 atactgacacttgtgattacattgaattatatcattttttca 38784822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 81 - 141
Target Start/End: Original strand, 36611449 - 36611509
Alignment:
Q  81 ctgagatgtcgacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtg 141  Q
    |||| |||| ||||||||||||| |||||||||||| |||||||||| ||||| |||||||    
T  36611449 ctgacatgttgacaccgatagtagtttaagaaaatgacataattgaacgtaatgacatgtg 36611509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 88 - 139
Target Start/End: Original strand, 645329 - 645380
Alignment:
Q  88 gtcgacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatg 139  Q
    ||||| || ||| |||||||||||||||| ||||||||||||||||||||||    
T  645329 gtcgatactgatggtaatttaagaaaatgacataattgaatgtaatcacatg 645380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 485 - 528
Target Start/End: Original strand, 21319952 - 21319995
Alignment:
Q  485 gacacttgtgattacattgaattatgtcattttttcaagatttt 528  Q
    ||||||||||||||||||||||||| |||||||||||| |||||    
T  21319952 gacacttgtgattacattgaattatatcattttttcaaaatttt 21319995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 156
Target Start/End: Original strand, 18592060 - 18592138
Alignment:
Q  78 acactgagatgtcgacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtgcccgtgtcgtgtcgg 156  Q
    ||||||| ||| |||||||| || || |||||||||||  ||||||| |||||||| | ||||||| ||||||||||||    
T  18592060 acactgatatgccgacaccgctaatattttaagaaaattacataattcaatgtaattatatgtgccggtgtcgtgtcgg 18592138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 141
Target Start/End: Original strand, 27239541 - 27239595
Alignment:
Q  87 tgtcgacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtg 141  Q
    |||| ||||| |||||||  ||||||||| |||||||||||||||||||||||||    
T  27239541 tgtcaacacctatagtaacgtaagaaaattgcataattgaatgtaatcacatgtg 27239595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 150
Target Start/End: Complemental strand, 27719049 - 27718979
Alignment:
Q  80 actgagatgtcgacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtgcccgtgtcg 150  Q
    ||||| |||||||||||  |||||||||||||||| |||| |||||||  |||||||||||| | ||||||    
T  27719049 actgacatgtcgacaccagtagtaatttaagaaaacggcaaaattgaacataatcacatgtgtcggtgtcg 27718979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 488 - 528
Target Start/End: Original strand, 30080511 - 30080551
Alignment:
Q  488 acttgtgattacattgaattatgtcattttttcaagatttt 528  Q
    |||||||||||||||||||||||||||||| |||| |||||    
T  30080511 acttgtgattacattgaattatgtcattttctcaaaatttt 30080551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 103 - 163
Target Start/End: Complemental strand, 41558701 - 41558641
Alignment:
Q  103 aatttaagaaaatggcataattgaatgtaatcacatgtgcccgtgtcgtgtcggacacaga 163  Q
    ||||| |||||||| ||||||| |||||||| | ||||| | |||||||||||||||||||    
T  41558701 aatttgagaaaatgacataattcaatgtaattaaatgtgtcagtgtcgtgtcggacacaga 41558641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 92 - 160
Target Start/End: Complemental strand, 43208332 - 43208264
Alignment:
Q  92 acaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtgcccgtgtcgtgtcggacac 160  Q
    |||||||||||||||| |||||||| ||||||| |||||||||| || || | |||| ||||| |||||    
T  43208332 acaccgatagtaatttgagaaaatgacataattcaatgtaatcatatctgtctgtgttgtgtcagacac 43208264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 485 - 528
Target Start/End: Complemental strand, 10010606 - 10010563
Alignment:
Q  485 gacacttgtgattacattgaattatgtcattttttcaagatttt 528  Q
    ||||| |||||||||| ||||||||||||||||||||| |||||    
T  10010606 gacacatgtgattacaatgaattatgtcattttttcaaaatttt 10010563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 487 - 522
Target Start/End: Complemental strand, 15294981 - 15294946
Alignment:
Q  487 cacttgtgattacattgaattatgtcattttttcaa 522  Q
    ||||||||||||| ||||||||||||||||||||||    
T  15294981 cacttgtgattaccttgaattatgtcattttttcaa 15294946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 467 - 522
Target Start/End: Complemental strand, 31084393 - 31084338
Alignment:
Q  467 cgtgtccgacactatactgacacttgtgattacattgaattatgtcattttttcaa 522  Q
    |||||||||||| | |  ||||||||| ||||||||||||||||| ||||||||||    
T  31084393 cgtgtccgacacgacatcgacacttgtaattacattgaattatgtgattttttcaa 31084338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 141
Target Start/End: Complemental strand, 35130010 - 35129971
Alignment:
Q  102 taatttaagaaaatggcataattgaatgtaatcacatgtg 141  Q
    ||||||||||||||||||||||||||||  ||||||||||    
T  35130010 taatttaagaaaatggcataattgaatgagatcacatgtg 35129971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 69 - 160
Target Start/End: Complemental strand, 38749644 - 38749553
Alignment:
Q  69 gaagcactgacactgagatgtcgacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtgcccgtgtcgtgtcggacac 160  Q
    |||||||  |||| || ||||||||||||||| |||||| | |||||| ||||||| |||||||| | |||||   |||| |||||||||||    
T  38749644 gaagcacaaacacggacatgtcgacaccgataataatttgaaaaaatgacataattcaatgtaattatatgtgttggtgttgtgtcggacac 38749553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 485 - 519
Target Start/End: Original strand, 19167583 - 19167617
Alignment:
Q  485 gacacttgtgattacattgaattatgtcatttttt 519  Q
    ||||||||||||||||||||||| |||||||||||    
T  19167583 gacacttgtgattacattgaattgtgtcatttttt 19167617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 480 - 522
Target Start/End: Original strand, 24906303 - 24906345
Alignment:
Q  480 atactgacacttgtgattacattgaattatgtcattttttcaa 522  Q
    |||| ||||||||| |||||| |||||||||||||||||||||    
T  24906303 ataccgacacttgtaattacactgaattatgtcattttttcaa 24906345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 472 - 522
Target Start/End: Complemental strand, 39698606 - 39698556
Alignment:
Q  472 ccgacactatactgacacttgtgattacattgaattatgtcattttttcaa 522  Q
    ||||||| | |||||||||||| |||||| |||||||||| ||||||||||    
T  39698606 ccgacacgacactgacacttgtaattacactgaattatgtgattttttcaa 39698556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 468 - 522
Target Start/End: Original strand, 41558644 - 41558698
Alignment:
Q  468 gtgtccgacactatactgacacttgtgattacattgaattatgtcattttttcaa 522  Q
    ||||||||||| | |||||||| | | ||||||||||||||||||||||| ||||    
T  41558644 gtgtccgacacgacactgacacatttaattacattgaattatgtcattttctcaa 41558698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 485 - 522
Target Start/End: Complemental strand, 8420079 - 8420042
Alignment:
Q  485 gacacttgtgattacattgaattatgtcattttttcaa 522  Q
    ||||||||| ||||||||||||||||| ||||||||||    
T  8420079 gacacttgtaattacattgaattatgttattttttcaa 8420042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 141
Target Start/End: Original strand, 28296325 - 28296378
Alignment:
Q  88 gtcgacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtg 141  Q
    ||||||||||||| |||||| |||||||| ||||||| |||||| ||| |||||    
T  28296325 gtcgacaccgataataatttgagaaaatgacataattcaatgtactcatatgtg 28296378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 90 - 150
Target Start/End: Complemental strand, 2577240 - 2577180
Alignment:
Q  90 cgacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtgcccgtgtcg 150  Q
    ||||||||||| |||||| |||||||| ||||||| | |||||||| |||| || ||||||    
T  2577240 cgacaccgataataatttgagaaaatgacataatttagtgtaatcatatgttccggtgtcg 2577180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 77 - 168
Target Start/End: Complemental strand, 9878105 - 9878013
Alignment:
Q  77 gacactgagatgtcgacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtgcccgtgtcgtgtcggacac-agacatgt 168  Q
    |||||||| | ||||||||| ||| |||||| |||| |||   ||||||||||||||||| |||| | ||| | |||||||||| ||||||||    
T  9878105 gacactgacacgtcgacaccaataataatttgagaatatgaattaattgaatgtaatcacttgtgtcagtgccatgtcggacactagacatgt 9878013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 485 - 517
Target Start/End: Complemental strand, 10009878 - 10009846
Alignment:
Q  485 gacacttgtgattacattgaattatgtcatttt 517  Q
    ||||| |||||||||||||||||||||||||||    
T  10009878 gacacatgtgattacattgaattatgtcatttt 10009846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 482 - 522
Target Start/End: Complemental strand, 27253340 - 27253300
Alignment:
Q  482 actgacacttgtgattacattgaattatgtcattttttcaa 522  Q
    |||||||| |||||||||||| ||||||| |||||||||||    
T  27253340 actgacacatgtgattacattcaattatgacattttttcaa 27253300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 437 - 528
Target Start/End: Complemental strand, 19369924 - 19369826
Alignment:
Q  437 ctctgttgcatcaacacttctaattgaaggcgtgtc-------cgacactatactgacacttgtgattacattgaattatgtcattttttcaagatttt 528  Q
    ||||||||||   |||||||| ||||||||||||||       |||||| | || ||||||||||||||||||||||||||||||||| |||| |||||    
T  19369924 ctctgttgcacggacacttctgattgaaggcgtgtctcggtgtcgacacgacaccgacacttgtgattacattgaattatgtcattttctcaaaatttt 19369826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 485 - 528
Target Start/End: Original strand, 6751889 - 6751932
Alignment:
Q  485 gacacttgtgattacattgaattatgtcattttttcaagatttt 528  Q
    ||||||||||||||||||||||||||||||||| |||| |||||    
T  6751889 gacacttgtgattacattgaattatgtcattttctcaaaatttt 6751932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 467 - 522
Target Start/End: Original strand, 9024165 - 9024220
Alignment:
Q  467 cgtgtccgacactatactgacacttgtgattacattgaattatgtcattttttcaa 522  Q
    |||||||||||| | |||||||| | ||||||||||||||||||||||||| ||||    
T  9024165 cgtgtccgacacgacactgacacatatgattacattgaattatgtcattttctcaa 9024220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 467 - 522
Target Start/End: Complemental strand, 12696394 - 12696339
Alignment:
Q  467 cgtgtccgacactatactgacacttgtgattacattgaattatgtcattttttcaa 522  Q
    |||||||||||| | |||||||||||| |||||| |||||||||| ||||||||||    
T  12696394 cgtgtccgacacgacactgacacttgtaattacactgaattatgtaattttttcaa 12696339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 160
Target Start/End: Complemental strand, 9024224 - 9024166
Alignment:
Q  102 taatttaagaaaatggcataattgaatgtaatcacatgtgcccgtgtcgtgtcggacac 160  Q
    |||||| |||||||| ||||||| |||||||||| ||||| | ||||||||||||||||    
T  9024224 taatttgagaaaatgacataattcaatgtaatcatatgtgtcagtgtcgtgtcggacac 9024166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 486 - 528
Target Start/End: Complemental strand, 10031621 - 10031579
Alignment:
Q  486 acacttgtgattacattgaattatgtcattttttcaagatttt 528  Q
    |||||||||||||||||||||||||||||||| |||| |||||    
T  10031621 acacttgtgattacattgaattatgtcattttctcaaaatttt 10031579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 485 - 562
Target Start/End: Complemental strand, 28715347 - 28715271
Alignment:
Q  485 gacacttgtgattacattgaattatgtcattttttcaagatttttatccgtgacagtgtcagtgccgtgtcccgtgtc 562  Q
    ||||||||| |||||| ||||||||||||||||||||| ||| ||| ||||| ||||||| ||  ||||||| |||||    
T  28715347 gacacttgtaattacactgaattatgtcattttttcaa-attattagccgtgtcagtgtccgtatcgtgtccggtgtc 28715271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 69 - 137
Target Start/End: Complemental strand, 10760922 - 10760855
Alignment:
Q  69 gaagcactgacactgagatgtcgacaccgatagtaatttaagaaaatggcataattgaatgtaatcaca 137  Q
    ||||||| |||||||| | |||||||| |||| |||||| |||||||| |||| |||||||||||||||    
T  10760922 gaagcacggacactgacacgtcgacactgataataatttgagaaaatgacata-ttgaatgtaatcaca 10760855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 472 - 515
Target Start/End: Original strand, 785449 - 785492
Alignment:
Q  472 ccgacactatactgacacttgtgattacattgaattatgtcatt 515  Q
    ||||||| | || |||||||||||||||||||||||||||||||    
T  785449 ccgacacgacaccgacacttgtgattacattgaattatgtcatt 785492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 485 - 528
Target Start/End: Complemental strand, 1334713 - 1334670
Alignment:
Q  485 gacacttgtgattacattgaattatgtcattttttcaagatttt 528  Q
    |||| ||||||||||||||||||||||| ||||||||| |||||    
T  1334713 gacatttgtgattacattgaattatgtccttttttcaaaatttt 1334670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 468 - 515
Target Start/End: Complemental strand, 7942324 - 7942277
Alignment:
Q  468 gtgtccgacactatactgacacttgtgattacattgaattatgtcatt 515  Q
    |||||||||||   |||||||| |||||||||||||||||||||||||    
T  7942324 gtgtccgacacagcactgacacatgtgattacattgaattatgtcatt 7942277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 141
Target Start/End: Original strand, 34057961 - 34058004
Alignment:
Q  98 atagtaatttaagaaaatggcataattgaatgtaatcacatgtg 141  Q
    |||||||| |||||||||| ||||||||| ||||||||||||||    
T  34057961 atagtaatataagaaaatgacataattgactgtaatcacatgtg 34058004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 107 - 149
Target Start/End: Original strand, 4343283 - 4343325
Alignment:
Q  107 taagaaaatggcataattgaatgtaatcacatgtgcccgtgtc 149  Q
    |||||||||| ||||||||||||||||||||| |||| |||||    
T  4343283 taagaaaatgacataattgaatgtaatcacatatgccagtgtc 4343325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 99 - 141
Target Start/End: Complemental strand, 10335427 - 10335385
Alignment:
Q  99 tagtaatttaagaaaatggcataattgaatgtaatcacatgtg 141  Q
    ||||||||| |||||||| |||||||||||||||||| |||||    
T  10335427 tagtaatttgagaaaatgacataattgaatgtaatcagatgtg 10335385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 77 - 131
Target Start/End: Original strand, 10421721 - 10421774
Alignment:
Q  77 gacactgagatgtcgacaccgatagtaatttaagaaaatggcataattgaatgta 131  Q
    |||||||| | ||||||||| |||||| |||||||||||| ||||||||||||||    
T  10421721 gacactgacacgtcgacacc-atagtattttaagaaaatgacataattgaatgta 10421774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 73 - 135
Target Start/End: Original strand, 20662944 - 20663006
Alignment:
Q  73 cactgacactgagatgtcgacaccgatagtaatttaagaaaatggcataattgaatgtaatca 135  Q
    |||| ||||||| |||||||||||  || || |||||| ||||| ||||||||||||||||||    
T  20662944 cactcacactgacatgtcgacaccattactagtttaagcaaatgacataattgaatgtaatca 20663006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 485 - 519
Target Start/End: Original strand, 26402687 - 26402721
Alignment:
Q  485 gacacttgtgattacattgaattatgtcatttttt 519  Q
    |||||||||||||||| ||||||||||||||||||    
T  26402687 gacacttgtgattacactgaattatgtcatttttt 26402721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 99 - 141
Target Start/End: Original strand, 29449689 - 29449731
Alignment:
Q  99 tagtaatttaagaaaatggcataattgaatgtaatcacatgtg 141  Q
    ||||||||| |||||||  ||||||||||||||||||||||||    
T  29449689 tagtaatttcagaaaataacataattgaatgtaatcacatgtg 29449731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 91 - 141
Target Start/End: Original strand, 30537500 - 30537550
Alignment:
Q  91 gacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtg 141  Q
    ||||||| |||||||||||||||||  ||||||||||||| |||| |||||    
T  30537500 gacaccgttagtaatttaagaaaataacataattgaatgttatcagatgtg 30537550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 469 - 526
Target Start/End: Complemental strand, 602710 - 602653
Alignment:
Q  469 tgtccgacactatactgacacttgtgattacattgaattatgtcattttttcaagatt 526  Q
    ||||| |||| | |||||||| |||||||| |||||||||||||||| ||| ||||||    
T  602710 tgtccaacacgacactgacacatgtgattatattgaattatgtcattgttttaagatt 602653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 138
Target Start/End: Original strand, 8623191 - 8623252
Alignment:
Q  77 gacactgagatgtcgacaccgatagtaatttaagaaaatggcataattgaatgtaatcacat 138  Q
    |||||||| | || ||||||||||  ||||| |||||||| ||| |||||||||||||||||    
T  8623191 gacactgacacgttgacaccgataacaattttagaaaatgacatcattgaatgtaatcacat 8623252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 485 - 522
Target Start/End: Complemental strand, 10158036 - 10157999
Alignment:
Q  485 gacacttgtgattacattgaattatgtcattttttcaa 522  Q
    ||||| ||||||||||||||||||||||||||| ||||    
T  10158036 gacacatgtgattacattgaattatgtcattttctcaa 10157999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 138
Target Start/End: Original strand, 34625732 - 34625781
Alignment:
Q  89 tcgacaccgatagtaatttaagaaaatggcataattgaatgtaatcacat 138  Q
    |||||||||||| |||||| ||||||||   |||||||||||||||||||    
T  34625732 tcgacaccgataataatttgagaaaatgaattaattgaatgtaatcacat 34625781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 482 - 522
Target Start/End: Original strand, 4859117 - 4859157
Alignment:
Q  482 actgacacttgtgattacattgaattatgtcattttttcaa 522  Q
    |||||||| ||||||||||||| ||||||||||||| ||||    
T  4859117 actgacacgtgtgattacattggattatgtcattttctcaa 4859157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 99 - 135
Target Start/End: Complemental strand, 10522994 - 10522958
Alignment:
Q  99 tagtaatttaagaaaatggcataattgaatgtaatca 135  Q
    |||||||||||||||||| ||||||||||| ||||||    
T  10522994 tagtaatttaagaaaatgacataattgaatataatca 10522958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 482 - 522
Target Start/End: Complemental strand, 31384975 - 31384935
Alignment:
Q  482 actgacacttgtgattacattgaattatgtcattttttcaa 522  Q
    |||||||||||| |||||| |||||||||| ||||||||||    
T  31384975 actgacacttgtaattacactgaattatgtgattttttcaa 31384935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 485 - 528
Target Start/End: Original strand, 43586012 - 43586055
Alignment:
Q  485 gacacttgtgattacattgaattatgtcattttttcaagatttt 528  Q
    ||||||||||||||||||||||||||||||||| |||| |||||    
T  43586012 gacacttgtgattacattgaattatgtcattttctcaaaatttt 43586055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 482 - 528
Target Start/End: Original strand, 14450799 - 14450845
Alignment:
Q  482 actgacacttgtgattacattgaattatgtcattttttcaagatttt 528  Q
    |||||||||||||||||||||||||||||| ||||| |||| |||||    
T  14450799 actgacacttgtgattacattgaattatgtgattttctcaaaatttt 14450845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 92 - 141
Target Start/End: Original strand, 16630796 - 16630845
Alignment:
Q  92 acaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtg 141  Q
    ||||||||| ||||||||||||||| ||||||| ||| ||||||||||||    
T  16630796 acaccgataataatttaagaaaatgacataattcaatttaatcacatgtg 16630845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 485 - 517
Target Start/End: Original strand, 13501085 - 13501117
Alignment:
Q  485 gacacttgtgattacattgaattatgtcatttt 517  Q
    |||||||||||||||||||||||||||||||||    
T  13501085 gacacttgtgattacattgaattatgtcatttt 13501117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 141
Target Start/End: Complemental strand, 6626537 - 6626482
Alignment:
Q  86 atgtcgacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtg 141  Q
    |||||||||||| ||  ||||||||||| || ||||||||||||||||| ||||||    
T  6626537 atgtcgacaccggtataaatttaagaaagtgtcataattgaatgtaatcgcatgtg 6626482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 90 - 141
Target Start/End: Original strand, 18622414 - 18622465
Alignment:
Q  90 cgacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtg 141  Q
    ||||| ||||| ||||||||||||||| ||||||| |||| |||||||||||    
T  18622414 cgacatcgataataatttaagaaaatgacataattaaatgcaatcacatgtg 18622465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 486 - 517
Target Start/End: Complemental strand, 24067304 - 24067273
Alignment:
Q  486 acacttgtgattacattgaattatgtcatttt 517  Q
    ||||||||||||||||||||||||||||||||    
T  24067304 acacttgtgattacattgaattatgtcatttt 24067273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 135
Target Start/End: Original strand, 31026692 - 31026739
Alignment:
Q  88 gtcgacaccgatagtaatttaagaaaatggcataattgaatgtaatca 135  Q
    ||||| ||||||| ||||||||||||||| ||||||| ||||||||||    
T  31026692 gtcgagaccgataataatttaagaaaatgacataattcaatgtaatca 31026739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 153
Target Start/End: Complemental strand, 35198279 - 35198228
Alignment:
Q  102 taatttaagaaaatggcataattgaatgtaatcacatgtgcccgtgtcgtgt 153  Q
    |||||||||||||||   |||||||||||||||||||||| | |||||||||    
T  35198279 taatttaagaaaatgaattaattgaatgtaatcacatgtgacggtgtcgtgt 35198228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 140
Target Start/End: Complemental strand, 1119641 - 1119579
Alignment:
Q  78 acactgagatgtcgacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgt 140  Q
    ||||||| |||||||||||| |  | |||||||||||||  ||||||||||||| ||||||||    
T  1119641 acactgacatgtcgacaccggtgatgatttaagaaaatgatataattgaatgtagtcacatgt 1119579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 485 - 527
Target Start/End: Original strand, 44984657 - 44984699
Alignment:
Q  485 gacacttgtgattacattgaattatgtcattttttcaagattt 527  Q
    |||||||||||| |||||||||||| |||||||||||| ||||    
T  44984657 gacacttgtgatcacattgaattatatcattttttcaaaattt 44984699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 140
Target Start/End: Complemental strand, 12933382 - 12933353
Alignment:
Q  111 aaaatggcataattgaatgtaatcacatgt 140  Q
    ||||||||||||||||||||||||||||||    
T  12933382 aaaatggcataattgaatgtaatcacatgt 12933353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 482 - 519
Target Start/End: Original strand, 37402088 - 37402125
Alignment:
Q  482 actgacacttgtgattacattgaattatgtcatttttt 519  Q
    |||||||| | |||||||||||||||||||||||||||    
T  37402088 actgacacatatgattacattgaattatgtcatttttt 37402125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 482 - 522
Target Start/End: Complemental strand, 18571027 - 18570987
Alignment:
Q  482 actgacacttgtgattacattgaattatgtcattttttcaa 522  Q
    |||||||| | ||||||||||||||||||||||||| ||||    
T  18571027 actgacacatatgattacattgaattatgtcattttctcaa 18570987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 89 - 141
Target Start/End: Complemental strand, 22131315 - 22131263
Alignment:
Q  89 tcgacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtg 141  Q
    ||||||| ||||||||||| |||||||| |||  || ||||||||||||||||    
T  22131315 tcgacactgatagtaatttgagaaaatgacattgttcaatgtaatcacatgtg 22131263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 482 - 522
Target Start/End: Complemental strand, 43065613 - 43065573
Alignment:
Q  482 actgacacttgtgattacattgaattatgtcattttttcaa 522  Q
    |||||||| |||||||||||| | |||||||||||||||||    
T  43065613 actgacacatgtgattacatttagttatgtcattttttcaa 43065573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0314 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 485 - 528
Target Start/End: Complemental strand, 9000 - 8957
Alignment:
Q  485 gacacttgtgattacattgaattatgtcattttttcaagatttt 528  Q
    ||||||||||||||| ||||||||||||||||| |||| |||||    
T  9000 gacacttgtgattacgttgaattatgtcattttctcaaaatttt 8957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 101 - 156
Target Start/End: Complemental strand, 142032 - 141977
Alignment:
Q  101 gtaatttaagaaaatggcataattgaatgtaatcacatgtgcccgtgtcgtgtcgg 156  Q
    |||| ||||||||||| ||||||| || ||||||||||||| | ||||||||||||    
T  142032 gtaacttaagaaaatgacataattaaaagtaatcacatgtgtcagtgtcgtgtcgg 141977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0223 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 472 - 522
Target Start/End: Complemental strand, 20237 - 20187
Alignment:
Q  472 ccgacactatactgacacttgtgattacattgaattatgtcattttttcaa 522  Q
    ||||||| | |||||||||||| |||||| |||||||||| ||||||||||    
T  20237 ccgacacgacactgacacttgtaattacactgaattatgtgattttttcaa 20187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 159
Target Start/End: Original strand, 28849 - 28918
Alignment:
Q  90 cgacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtgcccgtgtcgtgtcggaca 159  Q
    |||||||| || |||||||||||||| |||||||| |||||||| | ||||| | |||| ||||| ||||    
T  28849 cgacaccgttaataatttaagaaaatcgcataattcaatgtaattatatgtgtcggtgttgtgtcagaca 28918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 154
Target Start/End: Original strand, 99879 - 99956
Alignment:
Q  77 gacactgagatgtcgacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtgcccgtgtcgtgtc 154  Q
    ||||| || ||||||||||||||| |||||| |||||||  ||||||| |||||||| | |||||   ||||||||||    
T  99879 gacacggacatgtcgacaccgataataattttagaaaataacataattcaatgtaattatatgtgttggtgtcgtgtc 99956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 468 - 528
Target Start/End: Original strand, 18098 - 18158
Alignment:
Q  468 gtgtccgacactatactgacacttgtgattacattgaattatgtcattttttcaagatttt 528  Q
    ||||||||||| | ||  ||||||| |||||||||||||||||| ||||| |||| |||||    
T  18098 gtgtccgacacaacaccaacacttgcgattacattgaattatgttattttctcaaaatttt 18158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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