View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15322_high_30 (Length: 309)
Name: NF15322_high_30
Description: NF15322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15322_high_30 |
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Alignment Details
Target: chr6 (Bit Score: 274; Significance: 1e-153; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 19 - 296
Target Start/End: Original strand, 4364081 - 4364358
Alignment:
| Q |
19 |
gtatgcatatcaattcatatataatcataaaacataacataaataagaaaattactacagacaatacactacacttaattcaaacccataggtaattcat |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
4364081 |
gtatgcatatcaattcatatataatcataaaacataacataaataagaaaattactacagacagtacactacacttaattcaaacccataggtaattcat |
4364180 |
T |
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| Q |
119 |
acacaattcataagtcacaaattacaaacttaagcttgagtattaagcttttaacaagtggcaagatgcaaacacccaaaacaaggagtcaaatactaga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4364181 |
acacaattcataagtcacaaattacaaacttaagcttgagtattaagcttttaacaagtggcaagatgcaaacacccaaaacaaggagtcaaatactaga |
4364280 |
T |
|
| Q |
219 |
tatttaaattagaaagtttttcaaattaaaaacaataatcttccatttaattttcatcttcatatccatcttcatctc |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4364281 |
tatttaaattagaaagtttttcaaattaaaaacaataatcttccatttaattttcatcttcatatccatcttcatctc |
4364358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 21 - 295
Target Start/End: Original strand, 4368472 - 4368745
Alignment:
| Q |
21 |
atgcatatcaattcatatataatcataaaacataacataaataagaaaattactacagacaatacactacacttaattc-aaacccataggtaattcata |
119 |
Q |
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|
||||||||||||||||||||||||||| ||||||||||| |||||||||| ||| |||||||||||||| ||||||||| ||| ||||||| || ||||| |
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| T |
4368472 |
atgcatatcaattcatatataatcatataacataacatatataagaaaatcacttcagacaatacactaaacttaattcaaaatccataggaaagtcata |
4368571 |
T |
|
| Q |
120 |
cacaattcataagtcacaaattacaaacttaagcttgagtattaagcttttaacaagtggcaagatgcaaacacccaaaacaaggagtcaaatactagat |
219 |
Q |
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||||| | ||||||||||||||| |||||||||| | |||||||||||| |||||||| | |||| ||||||||||||||||||||||||| |||||| |
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| T |
4368572 |
cacaactgataagtcacaaattaacaacttaagctataatattaagcttttcacaagtggtatgatgtaaacacccaaaacaaggagtcaaattctagat |
4368671 |
T |
|
| Q |
220 |
atttaaattagaaagtttttcaaattaaaaacaataatcttccatttaattttcatcttcatatccatcttcatct |
295 |
Q |
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| T |
4368672 |
ctttaatctagaatg-ctttcaaaataaaaac-ataatcttccatttaattttcatctccatcttcatcttcatct |
4368745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 21 - 225
Target Start/End: Original strand, 4358712 - 4358913
Alignment:
| Q |
21 |
atgcatatcaattcatatataatcataaaacataacataaataagaaaattactacagacaatacactacacttaa-ttc-aaacccataggtaattcat |
118 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||| || ||| ||| |||||| |||||| ||| ||||||||||| || || | |
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| T |
4358712 |
atgcatatcaattcatatataatcata-----taacataaataagaaaatcacaacaaacactacactgaacttaaattcgaaacccataggaaagtcgt |
4358806 |
T |
|
| Q |
119 |
acacaattcataagtcacaaattacaaacttaagcttgagtatt-aagcttttaacaagtggcaagatgcaaacacccaaaacaaggagtcaaatactag |
217 |
Q |
| |
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||||||||||||||||| || | |||| |||||||| |||||| ||||||||| |||||| |||| | ||||||||||||||||||||||||| |||| |
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| T |
4358807 |
acacaattcataagtcagaattaacaa-cttaagctatagtatttaagcttttagcaagtgacaagctctaaacacccaaaacaaggagtcaaattctag |
4358905 |
T |
|
| Q |
218 |
atatttaa |
225 |
Q |
| |
|
|||||||| |
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|
| T |
4358906 |
atatttaa |
4358913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 54 - 177
Target Start/End: Original strand, 4388367 - 4388491
Alignment:
| Q |
54 |
aacataaataagaaaattactacagacaatacactacacttaattcaaa-cccataggtaattcatacacaattcataagtcacaaattacaaacttaag |
152 |
Q |
| |
|
|||||| |||||||||| ||||||| || || || |||||| ||||| |||||| | || || ||||||||||||||||||||||| | |||||| |
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|
| T |
4388367 |
aacatagataagaaaatcactacaggcatctcattaaacttaactcaaaacccataagaaagccaaacacaattcataagtcacaaattcataccttaag |
4388466 |
T |
|
| Q |
153 |
cttgagtattaagcttttaacaagt |
177 |
Q |
| |
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|| ||||||||||||||||||||| |
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|
| T |
4388467 |
ctatagtattaagcttttaacaagt |
4388491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 177
Target Start/End: Original strand, 4375758 - 4375818
Alignment:
| Q |
119 |
acacaattcataagtcacaaattacaaacttaagc--ttgagtattaagcttttaacaagt |
177 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||| | |||||||||||||||| |||| |
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|
| T |
4375758 |
acacaattcataagtcacaaattaaaaccttaagctatatagtattaagcttttaaaaagt |
4375818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 155
Target Start/End: Complemental strand, 5727095 - 5727059
Alignment:
| Q |
119 |
acacaattcataagtcacaaattacaaacttaagctt |
155 |
Q |
| |
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|||||||||||||||||||||||| || ||||||||| |
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|
| T |
5727095 |
acacaattcataagtcacaaattataaccttaagctt |
5727059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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