View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15322_high_32 (Length: 274)
Name: NF15322_high_32
Description: NF15322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15322_high_32 |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 18470192 - 18470457
Alignment:
| Q |
1 |
tagttaaattttgatgctactatgatatttgggttaaaacttgggtgaaagtgtccagcataacaatgttgtcattgtcagttgagcttgggcttacaga |
100 |
Q |
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| T |
18470192 |
tagttaaattttgatgctactgtgatatttgggttaaaacttgggtgaaagtgtccagcataacaatgttgtcattgttagttgagctagggcttacaga |
18470291 |
T |
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| Q |
101 |
agaaatgataca-tgttttnnnnnnnnnnttaggcttaaacgcagttttgatctccctattttgacaaaaatgcaattttgatccctctattttcaattg |
199 |
Q |
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| T |
18470292 |
agaaacgatacactgttttaatttttt--ttaggcttaaacgcaattttgatctccttattttgacaaaaatgcaattttgatccctctattttcaattg |
18470389 |
T |
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| Q |
200 |
cgcaattttgattctcatttctaaaacatttaccaaattatggttttgaccatctaatttgatgatgt |
267 |
Q |
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| T |
18470390 |
cgcaattttgattctcatttctaaaacatttaccaaatcatggttttgaccatctaatttgatgatgt |
18470457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 18475440 - 18475512
Alignment:
| Q |
14 |
atgctactatgatatttgggttaaaacttgggtgaaagtgtccagcataacaatgttgtcattgtcagttgag |
86 |
Q |
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| T |
18475440 |
atgctactgtgatacttcggttaaaatttaggtgaaagtgtttagcataacaatattgtcattgtcagttgag |
18475512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 267
Target Start/End: Original strand, 18475578 - 18475693
Alignment:
| Q |
154 |
ccctattttgacaaaaat-gcaattttgatccctctattttcaattgcgcaattttgattctcatttct-aaaacatttaccaaattatggttttgacca |
251 |
Q |
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| T |
18475578 |
ccctattatgacaaaaatagcaattttattccctccatttttaattgcgcaattttgatacccatttttaaaaaaaattgccaatttgtaattttgacca |
18475677 |
T |
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| Q |
252 |
tctaatttgatgatgt |
267 |
Q |
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| T |
18475678 |
tccaatttgatgatgt |
18475693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 183
Target Start/End: Original strand, 51757511 - 51757547
Alignment:
| Q |
147 |
ttgatctccctattttgacaaaaatgcaattttgatc |
183 |
Q |
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| T |
51757511 |
ttgatctccctattttgacaaaactgcaattttgatc |
51757547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 162
Target Start/End: Complemental strand, 9741425 - 9741393
Alignment:
| Q |
130 |
taggcttaaacgcagttttgatctccctatttt |
162 |
Q |
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| T |
9741425 |
taggcttaaacgcacttttgatctccctatttt |
9741393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 193
Target Start/End: Complemental strand, 31164071 - 31164019
Alignment:
| Q |
141 |
gcagttttgatctccctattttgacaaaaatgcaattttgatccctctatttt |
193 |
Q |
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| T |
31164071 |
gcagttttgatcaacttattttgacaaaattacaattttgatccatctatttt |
31164019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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