View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15322_high_37 (Length: 245)
Name: NF15322_high_37
Description: NF15322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15322_high_37 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 47828794 - 47828567
Alignment:
| Q |
1 |
ttcttgagacatattagcaaagcaaatcctaaaccagccaggttcagaacaatgacaagaagatccaggagatatattcaaaccaatttggtaaagaatc |
100 |
Q |
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| T |
47828794 |
ttcttgagacatattagcaaagcaaatcctaaaccacccaggttcagaacaatgacaagaagatccaggagatatattcaaaccaatttggtaaagaatc |
47828695 |
T |
|
| Q |
101 |
cttttccaaagctcattctctgcctcaaaagttgcagaactcaataaatgcctcatatcaacccaacagaacaatccagcattactctttaaacaacgaa |
200 |
Q |
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| T |
47828694 |
cttttccaaagctcattctctgcctcaaaagttgcagaactcaataaatgcctcatatcaacccaacagaacaatccagcattactctttaaacaactaa |
47828595 |
T |
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| Q |
201 |
tccccgcatttcttaaaccggttacaag |
228 |
Q |
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| T |
47828594 |
tccccgcatttcttaaaccggttacaag |
47828567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 81
Target Start/End: Original strand, 42788822 - 42788893
Alignment:
| Q |
10 |
catattagcaaagcaaatcctaaaccagccaggttcagaacaatgacaagaagatccaggagatatattcaa |
81 |
Q |
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| T |
42788822 |
catattagcaaagcagactctaaaccaaccaggttgatcacaatgacaagaacaccccggagatatattcaa |
42788893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 10 - 81
Target Start/End: Original strand, 42798360 - 42798431
Alignment:
| Q |
10 |
catattagcaaagcaaatcctaaaccagccaggttcagaacaatgacaagaagatccaggagatatattcaa |
81 |
Q |
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||||||||||||||| | |||||||| ||||||| | ||||||||||||| | || |||||||||||||| |
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| T |
42798360 |
catattagcaaagcagactctaaaccaaccaggttgatcacaatgacaagaacaccccggagatatattcaa |
42798431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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