View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15322_high_38 (Length: 243)
Name: NF15322_high_38
Description: NF15322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15322_high_38 |
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Alignment Details
Target: chr4 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 10 - 169
Target Start/End: Complemental strand, 43397002 - 43396843
Alignment:
| Q |
10 |
cattaaagtagtccttgatattttcaaactggagacaaattagtcctgaactcattataacagaggatttatttatcttcaatttgaaaatgtcaatgac |
109 |
Q |
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| T |
43397002 |
cattaaagtagtccttgatattttcaaactggggataaattagtcctgaactcattatacaagaggacttatttatcttcaatttgaaaatgtcaatgac |
43396903 |
T |
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| Q |
110 |
tagtttggtattatttcttctcggagactaaattggtcccccaaattttatttatagaac |
169 |
Q |
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| T |
43396902 |
tagtttggtattatttcttctcggagactaaattggtccgccaaattttatttatagaac |
43396843 |
T |
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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 60 - 125
Target Start/End: Complemental strand, 32358605 - 32358539
Alignment:
| Q |
60 |
ctcattataacagagg-atttatttatcttcaatttgaaaatgtcaatgactagtttggtattattt |
125 |
Q |
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| T |
32358605 |
ctcattataacagagggacttatttgtccccaatttgaaaatgtcaagggctagtttggtattattt |
32358539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 143
Target Start/End: Complemental strand, 31317920 - 31317819
Alignment:
| Q |
43 |
gacaaattagtcctgaactcattataacaga-ggatttatttatcttcaatttgaaaatgtcaatgactagtttggtattatttcttctcggagactaaa |
141 |
Q |
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|||| |||||||||| |||||||||||| | ||| | |||| || || ||| ||||||||| ||||||||||||||||||| || |||| ||||||| |
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| T |
31317920 |
gacagattagtcctggcctcattataacaaaaggactaatttgtccccatttttaaaatgtcagggactagtttggtattattttttgtcggggactaaa |
31317821 |
T |
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| Q |
142 |
tt |
143 |
Q |
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| T |
31317820 |
tt |
31317819 |
T |
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