View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15322_high_7 (Length: 542)
Name: NF15322_high_7
Description: NF15322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15322_high_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 493; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 11 - 523
Target Start/End: Complemental strand, 30692421 - 30691909
Alignment:
| Q |
11 |
cagagaagatagagttagtttctctttcgagattagggtggacgttccaaagtgtctgtaacatttccacggcttctgctaatcaatctagattgggtag |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30692421 |
cagagaagatagagttagtttctctttcgagattagggtggacgttccaaagtgtccgtaacatttccacggcttctgctaatcaatctagcttgggtag |
30692322 |
T |
|
| Q |
111 |
caatagtggtggaaatggaaatgaaaaatctgatactaaacagaagaaggaagcttcgccggaggagtgtgatgaggctgttgaagacttgagtaccata |
210 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30692321 |
caacagtggtggaaatggaaatgaaaaatctgatactaaacagaagaaggaagcttcgccggaggagtgtgatgaggctgttgaagacttgagtaccata |
30692222 |
T |
|
| Q |
211 |
aaagcgaaagctaaggctaaacaattacaagaaccacataagagtactgaatctattgtaaagaaattctgggctatgattctaggaattggtccagctt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30692221 |
aaagcgaaagctaaggctaaacaattacaagaaccacataagagtactgaatctattgtaaagaaattctgggctatgattctaggaattggtccagctt |
30692122 |
T |
|
| Q |
311 |
tccgagctattttgttgatgagcaggttttaaatttattgcctcttgtttttaagtgtgatgtaaatacgtgtgtcagacttttctggtttttcattgcc |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30692121 |
tccgagctattttgttgatgagcaggttttaaatttattgcctcttgtttttaagtgcgatgtaaatacgtgtgtcagacttttctggtttttcattgcc |
30692022 |
T |
|
| Q |
411 |
tagggatgattgggcaaagaagttaagtcattggaaggatgaatttaaatccactctgcaacactattggtttggaacaaaactactttgggctgatgtt |
510 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30692021 |
taggaatgattgggcaaagaagttaagtcattggaaggatgaatttaaatccactctgcaacactattggtttggaacaaaactactttgggctgatgtt |
30691922 |
T |
|
| Q |
511 |
aggataagctcca |
523 |
Q |
| |
|
||||||||||||| |
|
|
| T |
30691921 |
aggataagctcca |
30691909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University