View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15322_low_1 (Length: 659)

Name: NF15322_low_1
Description: NF15322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15322_low_1
NF15322_low_1
[»] chr5 (33 HSPs)
chr5 (246-429)||(3729038-3729224)
chr5 (19-177)||(3728800-3728958)
chr5 (536-653)||(3729331-3729448)
chr5 (536-625)||(8159068-8159157)
chr5 (539-636)||(34766885-34766982)
chr5 (538-625)||(9793635-9793722)
chr5 (536-623)||(21583853-21583940)
chr5 (538-625)||(9793732-9793819)
chr5 (538-625)||(39508316-39508403)
chr5 (536-625)||(41929343-41929432)
chr5 (536-624)||(21020686-21020774)
chr5 (542-625)||(9913804-9913887)
chr5 (538-631)||(20736158-20736251)
chr5 (536-625)||(2068965-2069050)
chr5 (544-620)||(20815677-20815753)
chr5 (549-625)||(25081769-25081845)
chr5 (549-625)||(25139738-25139814)
chr5 (536-625)||(3711184-3711277)
chr5 (539-601)||(41910219-41910281)
chr5 (116-177)||(20719908-20719970)
chr5 (116-177)||(24431511-24431573)
chr5 (538-580)||(38451039-38451081)
chr5 (121-177)||(34381128-34381185)
chr5 (121-177)||(39595390-39595447)
chr5 (115-177)||(7927467-7927531)
chr5 (116-177)||(40566109-40566172)
chr5 (119-177)||(11666295-11666354)
chr5 (116-177)||(125208-125270)
chr5 (116-177)||(3141612-3141674)
chr5 (116-177)||(27392595-27392657)
chr5 (121-174)||(29498246-29498300)
chr5 (121-177)||(42699166-42699222)
chr5 (121-165)||(43482494-43482538)
[»] chr2 (41 HSPs)
chr2 (540-634)||(37060081-37060175)
chr2 (538-625)||(5958968-5959055)
chr2 (538-623)||(15070390-15070475)
chr2 (542-625)||(28107492-28107575)
chr2 (536-634)||(30609684-30609782)
chr2 (536-625)||(6974515-6974604)
chr2 (538-621)||(4382213-4382296)
chr2 (538-625)||(21423367-21423454)
chr2 (542-625)||(24475936-24476019)
chr2 (538-625)||(27004451-27004538)
chr2 (536-634)||(13274194-13274291)
chr2 (538-625)||(37802836-37802923)
chr2 (543-625)||(30393597-30393679)
chr2 (539-625)||(5807321-5807406)
chr2 (540-625)||(10217357-10217442)
chr2 (538-625)||(14786242-14786323)
chr2 (538-625)||(37140127-37140221)
chr2 (544-621)||(43022888-43022964)
chr2 (546-625)||(22194291-22194370)
chr2 (538-593)||(30757184-30757239)
chr2 (62-109)||(18561860-18561907)
chr2 (116-177)||(7086017-7086079)
chr2 (116-177)||(13104595-13104657)
chr2 (116-177)||(14714102-14714164)
chr2 (116-177)||(32750114-32750176)
chr2 (538-599)||(7747945-7748006)
chr2 (542-603)||(15431254-15431315)
chr2 (574-618)||(27404651-27404695)
chr2 (116-177)||(34249696-34249759)
chr2 (540-603)||(27969511-27969574)
chr2 (118-177)||(23880211-23880271)
chr2 (116-177)||(18917740-18917802)
chr2 (116-177)||(36376744-36376806)
chr2 (121-177)||(36763417-36763475)
chr2 (116-177)||(42081153-42081215)
chr2 (116-165)||(1876245-1876294)
chr2 (121-177)||(11164274-11164331)
chr2 (116-177)||(19695585-19695646)
chr2 (121-177)||(22390268-22390325)
chr2 (121-177)||(45515497-45515554)
chr2 (118-177)||(1889263-1889323)
[»] scaffold0306 (1 HSPs)
scaffold0306 (538-625)||(13056-13143)
[»] scaffold0152 (1 HSPs)
scaffold0152 (538-625)||(22184-22271)
[»] chr3 (28 HSPs)
chr3 (538-624)||(36404222-36404308)
chr3 (536-625)||(45602986-45603075)
chr3 (538-625)||(39391959-39392046)
chr3 (538-625)||(29360484-29360571)
chr3 (540-625)||(35534484-35534569)
chr3 (536-625)||(37115885-37115974)
chr3 (543-615)||(16353494-16353566)
chr3 (536-634)||(52742345-52742443)
chr3 (544-634)||(14201710-14201798)
chr3 (538-625)||(46487272-46487358)
chr3 (539-602)||(47599389-47599452)
chr3 (540-610)||(48644538-48644608)
chr3 (538-624)||(48944105-48944191)
chr3 (538-611)||(54882992-54883065)
chr3 (538-613)||(3618340-3618415)
chr3 (116-177)||(33007476-33007539)
chr3 (116-177)||(41111965-41112027)
chr3 (116-177)||(49130970-49131032)
chr3 (121-177)||(46473244-46473301)
chr3 (121-177)||(11173566-11173623)
chr3 (116-174)||(31997921-31997981)
chr3 (116-177)||(24551120-24551182)
chr3 (116-177)||(28269922-28269984)
chr3 (116-177)||(29706019-29706081)
chr3 (120-177)||(37215128-37215186)
chr3 (116-177)||(37302967-37303029)
chr3 (116-177)||(8066471-8066532)
chr3 (121-177)||(19418058-19418115)
[»] chr4 (25 HSPs)
chr4 (538-625)||(36609413-36609501)
chr4 (538-625)||(21555382-21555469)
chr4 (536-625)||(12701040-12701129)
chr4 (544-625)||(56100144-56100225)
chr4 (538-625)||(35929709-35929796)
chr4 (538-638)||(23249459-23249559)
chr4 (538-625)||(19598369-19598456)
chr4 (539-616)||(827840-827917)
chr4 (539-625)||(35749387-35749473)
chr4 (543-625)||(41842790-41842871)
chr4 (536-602)||(27733401-27733467)
chr4 (538-634)||(44243696-44243792)
chr4 (574-637)||(53584602-53584665)
chr4 (115-177)||(51389432-51389495)
chr4 (116-177)||(55927100-55927162)
chr4 (116-177)||(16004220-16004281)
chr4 (118-177)||(38844385-38844445)
chr4 (116-174)||(5123483-5123542)
chr4 (116-177)||(25523089-25523151)
chr4 (116-177)||(28480431-28480493)
chr4 (116-177)||(28481305-28481367)
chr4 (116-177)||(28482180-28482242)
chr4 (116-177)||(31275262-31275324)
chr4 (116-177)||(42915112-42915174)
chr4 (538-578)||(53583471-53583511)
[»] chr6 (16 HSPs)
chr6 (538-624)||(2814890-2814976)
chr6 (538-625)||(444523-444610)
chr6 (539-625)||(6200163-6200249)
chr6 (536-624)||(26393987-26394075)
chr6 (538-624)||(24640352-24640438)
chr6 (538-634)||(1067793-1067890)
chr6 (542-625)||(23774071-23774154)
chr6 (271-389)||(24492720-24492838)
chr6 (586-638)||(12324161-12324213)
chr6 (116-177)||(34021065-34021127)
chr6 (539-603)||(34710135-34710199)
chr6 (546-608)||(2993592-2993654)
chr6 (116-174)||(21857462-21857521)
chr6 (116-177)||(29383673-29383735)
chr6 (116-174)||(32853037-32853094)
chr6 (120-165)||(31255358-31255403)
[»] chr8 (30 HSPs)
chr8 (536-625)||(4623848-4623937)
chr8 (543-624)||(23403601-23403682)
chr8 (539-624)||(30204649-30204734)
chr8 (538-625)||(21567709-21567796)
chr8 (536-625)||(16655980-16656069)
chr8 (555-636)||(22798532-22798613)
chr8 (536-636)||(37629993-37630093)
chr8 (538-624)||(36470135-36470222)
chr8 (543-625)||(3001382-3001464)
chr8 (542-625)||(14842310-14842393)
chr8 (539-625)||(4234180-4234266)
chr8 (542-624)||(36046533-36046614)
chr8 (538-624)||(39436844-39436930)
chr8 (539-625)||(41787498-41787584)
chr8 (536-620)||(29958512-29958596)
chr8 (543-624)||(23275532-23275613)
chr8 (116-177)||(24503033-24503095)
chr8 (585-625)||(4414228-4414268)
chr8 (116-177)||(23258148-23258210)
chr8 (543-625)||(45310021-45310102)
chr8 (116-177)||(40102139-40102201)
chr8 (116-177)||(40413256-40413318)
chr8 (121-177)||(7678848-7678905)
chr8 (121-177)||(28927797-28927854)
chr8 (118-177)||(22767246-22767306)
chr8 (116-177)||(3989021-3989083)
chr8 (136-177)||(28473458-28473500)
chr8 (116-177)||(38128419-38128481)
chr8 (116-177)||(41344562-41344624)
chr8 (133-177)||(896023-896068)
[»] chr7 (17 HSPs)
chr7 (538-625)||(41326043-41326130)
chr7 (539-625)||(8163644-8163730)
chr7 (538-625)||(40337066-40337153)
chr7 (538-625)||(28089135-28089223)
chr7 (539-625)||(2362383-2362469)
chr7 (543-625)||(35589412-35589494)
chr7 (538-593)||(43403211-43403266)
chr7 (116-177)||(44894367-44894429)
chr7 (116-165)||(10591281-10591330)
chr7 (116-177)||(5378743-5378805)
chr7 (121-174)||(7390672-7390726)
chr7 (116-177)||(19510250-19510312)
chr7 (116-177)||(46651788-46651850)
chr7 (121-177)||(8792498-8792552)
chr7 (116-165)||(41966457-41966506)
chr7 (589-625)||(31637708-31637744)
chr7 (539-579)||(31637762-31637802)
[»] scaffold0302 (1 HSPs)
scaffold0302 (536-634)||(18501-18599)
[»] chr1 (35 HSPs)
chr1 (536-625)||(6750308-6750397)
chr1 (538-625)||(39001949-39002036)
chr1 (543-638)||(794902-794997)
chr1 (538-625)||(3695408-3695495)
chr1 (538-624)||(18808781-18808867)
chr1 (540-634)||(41998881-41998975)
chr1 (543-624)||(571650-571731)
chr1 (538-619)||(11121865-11121946)
chr1 (543-625)||(26653945-26654027)
chr1 (540-636)||(24909510-24909606)
chr1 (549-634)||(1585853-1585938)
chr1 (538-606)||(36290612-36290680)
chr1 (543-632)||(44272362-44272452)
chr1 (116-177)||(7645447-7645507)
chr1 (117-177)||(28253131-28253192)
chr1 (561-625)||(4792591-4792655)
chr1 (538-600)||(7409823-7409885)
chr1 (584-625)||(9224870-9224911)
chr1 (116-177)||(34187380-34187442)
chr1 (116-177)||(39010930-39010992)
chr1 (116-177)||(40610345-40610407)
chr1 (116-177)||(37516028-37516089)
chr1 (121-165)||(31817293-31817337)
chr1 (116-171)||(52233129-52233184)
chr1 (116-177)||(1615153-1615215)
chr1 (116-174)||(2362490-2362547)
chr1 (116-169)||(8934427-8934481)
chr1 (116-177)||(36690465-36690527)
chr1 (116-177)||(36706566-36706628)
chr1 (116-177)||(50659085-50659147)
chr1 (121-177)||(25061849-25061906)
chr1 (116-165)||(45740437-45740486)
chr1 (122-177)||(36418195-36418251)
chr1 (115-174)||(50061868-50061928)
chr1 (121-177)||(51571544-51571599)
[»] scaffold0532 (1 HSPs)
scaffold0532 (538-625)||(11321-11408)
[»] scaffold0025 (1 HSPs)
scaffold0025 (540-625)||(67874-67959)
[»] scaffold0140 (1 HSPs)
scaffold0140 (538-625)||(21478-21565)
[»] scaffold1248 (1 HSPs)
scaffold1248 (536-626)||(969-1059)
[»] scaffold0952 (1 HSPs)
scaffold0952 (536-626)||(1254-1344)
[»] scaffold0121 (1 HSPs)
scaffold0121 (538-624)||(37403-37489)
[»] scaffold0003 (1 HSPs)
scaffold0003 (271-366)||(92085-92180)
[»] scaffold0036 (1 HSPs)
scaffold0036 (116-177)||(18120-18181)
[»] scaffold0501 (1 HSPs)
scaffold0501 (115-177)||(10408-10471)
[»] scaffold0115 (1 HSPs)
scaffold0115 (116-177)||(15082-15143)


Alignment Details
Target: chr5 (Bit Score: 165; Significance: 6e-88; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 246 - 429
Target Start/End: Original strand, 3729038 - 3729224
Alignment:
Q  246 atcatttctcatctaaatttatgccaacaaaaaattgaagttgtcacaaactttccttaattccaaaaaactaatgaaaactatttctccttcaaaatta 345  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3729038 atcatttctcatctaaatttatgccaacaaaaaattgaagttgtcacaaactttccttaattccaaaaaactaatgaaaactatttctccttcaaaatta 3729137  T
Q  346 aatctatttacactaatagagagacaaagcatataaaattaaaact---tttttccacacattaagagccaatttgaaacacttccc 429  Q
    ||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||  |||||||||||||||    
T  3729138 aatctatttacactaatagagagacaaagcatataaaattaaaacttgatttttccacacattaagagcctctttgaaacacttccc 3729224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 19 - 177
Target Start/End: Original strand, 3728800 - 3728958
Alignment:
Q  19 ccattccaccctgttatatgttgttgccatatctaacttccaccgggcggctcgcctgaatgccgagtctttctccgccgccaactcgacgtcaaacagt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | || |    
T  3728800 ccattccaccctgttatatgttgttgccatatctaacttccaccgggcggctcgcctgaatgccgagtctttctccgccgccaactcaacgtcgagcaat 3728899  T
Q  119 gttatttgaacaaccatttgagacaatttttataacaacttctttttctctcttttcat 177  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  3728900 gttatttgaacaatcatttgagacaatttttataacaacttctttttctctcttttcat 3728958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 536 - 653
Target Start/End: Original strand, 3729331 - 3729448
Alignment:
Q  536 gaggactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaacgagctctaaa 635  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||    
T  3729331 gaggactaaaactaaaacatgtaaaaggataattattgtgagaagaggacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggctctaaa 3729430  T
Q  636 tatcctatttcatctctc 653  Q
    ||||||||||||||||||    
T  3729431 tatcctatttcatctctc 3729448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 536 - 625
Target Start/End: Original strand, 8159068 - 8159157
Alignment:
Q  536 gaggactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaac 625  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  8159068 gaggactaaaactaaaacatgtaaaaggataattattgtgagaagaggacttgtatatttcaaaaattgaaaacaaaaactatttcaaac 8159157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 539 - 636
Target Start/End: Original strand, 34766885 - 34766982
Alignment:
Q  539 gactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaacgagctctaaat 636  Q
    |||||||||||||||||||||||| |||| |||| ||||||||||| |||||||||||||||| |||||||||||||||||||||||  |||||||||    
T  34766885 gactaaaactaaaacatgtaaaagaataactattgtgagaagaggacttgtatatttcaaaaattgaaaacaaaaactatttcaaacaggctctaaat 34766982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 538 - 625
Target Start/End: Original strand, 9793635 - 9793722
Alignment:
Q  538 ggactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaac 625  Q
    |||||||||||||||||||||||||||||| |||| | | ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  9793635 ggactaaaactaaaacatgtaaaaggataactattgtaaaaaggggatttgtatatttcaaaaactgaaaacaaaaactatttcaaac 9793722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 536 - 623
Target Start/End: Complemental strand, 21583940 - 21583853
Alignment:
Q  536 gaggactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaa 623  Q
    |||||||||||||||||||||||||| ||||| |||| |||||||| || ||||||||||||||||||||||||||||||||||||||    
T  21583940 gaggactaaaactaaaacatgtaaaaagataactattatgagaagatgacttgtatatttcaaaaactgaaaacaaaaactatttcaa 21583853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 538 - 625
Target Start/End: Original strand, 9793732 - 9793819
Alignment:
Q  538 ggactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaac 625  Q
    ||||||||||||||||| |||||||||||| |||| | | ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  9793732 ggactaaaactaaaacaagtaaaaggataactattgtaaaaaggggatttgtatatttcaaaaactgaaaacaaaaactatttcaaac 9793819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 538 - 625
Target Start/End: Original strand, 39508316 - 39508403
Alignment:
Q  538 ggactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaac 625  Q
    ||||||||||||||||||||||||| |||| |||| |||||| | || ||||||||||||||||||||||||||||||||||||||||    
T  39508316 ggactaaaactaaaacatgtaaaagaataactattgtgagaaaaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaac 39508403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 536 - 625
Target Start/End: Complemental strand, 41929432 - 41929343
Alignment:
Q  536 gaggactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaac 625  Q
    |||||||||||||||||||||||||||||||| ||||  || ||||| | ||| ||||||||||||||||||||||||||||||||||||    
T  41929432 gaggactaaaactaaaacatgtaaaaggataactattgcgaaaagagaacttgcatatttcaaaaactgaaaacaaaaactatttcaaac 41929343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 536 - 624
Target Start/End: Complemental strand, 21020774 - 21020686
Alignment:
Q  536 gaggactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaa 624  Q
    |||||||||||||||| ||| ||||||||||| ||||  ||||||| || || ||||||||||||||||||||||||||||||||||||    
T  21020774 gaggactaaaactaaatcatataaaaggataactattgcgagaagaagacttatatatttcaaaaactgaaaacaaaaactatttcaaa 21020686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 542 - 625
Target Start/End: Complemental strand, 9913887 - 9913804
Alignment:
Q  542 taaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaac 625  Q
    |||||||||||||||||||| ||||| |||| ||||| ||| | |||||||||||||||||| |||||||||||||||||||||    
T  9913887 taaaactaaaacatgtaaaaagataactattatgagatgagaacttgtatatttcaaaaactaaaaacaaaaactatttcaaac 9913804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 538 - 631
Target Start/End: Original strand, 20736158 - 20736251
Alignment:
Q  538 ggactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaacgagctc 631  Q
    |||||||||||||||||||||||| ||||| |||| ||| | ||||| || ||| ||||||||| ||||||||||||||||||||||| |||||    
T  20736158 ggactaaaactaaaacatgtaaaatgataactattgtgaaaggaggacttatatttttcaaaaattgaaaacaaaaactatttcaaacaagctc 20736251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 536 - 625
Target Start/End: Complemental strand, 2069050 - 2068965
Alignment:
Q  536 gaggactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaac 625  Q
    ||||||||||||||||||||  |||| ||||| |||| |||||||| || ||  ||||||||||||||||||||||||||||||||||||    
T  2069050 gaggactaaaactaaaacat--aaaaagataaatattgtgagaagaagactt--atatttcaaaaactgaaaacaaaaactatttcaaac 2068965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 544 - 620
Target Start/End: Complemental strand, 20815753 - 20815677
Alignment:
Q  544 aaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactattt 620  Q
    |||| ||||||| ||||| ||||| |||| |||||| |||| |||||||||| ||||||||||||||||||||||||    
T  20815753 aaacaaaaacatataaaatgataactattgtgagaaaaggacttgtatattttaaaaactgaaaacaaaaactattt 20815677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 549 - 625
Target Start/End: Complemental strand, 25081845 - 25081769
Alignment:
Q  549 aaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaac 625  Q
    ||||||| ||||| ||||| |||| |||||||| |  ||||||||||||||| ||||||||||||||||||||||||    
T  25081845 aaaacatataaaatgataactattgtgagaagatggcttgtatatttcaaaacctgaaaacaaaaactatttcaaac 25081769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 549 - 625
Target Start/End: Complemental strand, 25139814 - 25139738
Alignment:
Q  549 aaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaac 625  Q
    ||||||| ||||| ||||| |||| |||||||| |  ||||||||||||||| ||||||||||||||||||||||||    
T  25139814 aaaacatataaaatgataactattgtgagaagatggcttgtatatttcaaaacctgaaaacaaaaactatttcaaac 25139738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 536 - 625
Target Start/End: Complemental strand, 3711277 - 3711184
Alignment:
Q  536 gaggactaaaactaaaacatgtaaaaggataattattttgagaagaggatttg----tatatttcaaaaactgaaaacaaaaactatttcaaac 625  Q
    ||||| |||| ||||||||||||||| ||||| |||| ||| || || | |||    |||||||||||||||||||||||||||||||||||||    
T  3711277 gaggattaaatctaaaacatgtaaaaagataactattgtgaaaatagaacttgtatatatatttcaaaaactgaaaacaaaaactatttcaaac 3711184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 539 - 601
Target Start/End: Original strand, 41910219 - 41910281
Alignment:
Q  539 gactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaa 601  Q
    ||||||||||||||||||||||| ||||| |||| ||| ||||||| |||||||||| |||||    
T  41910219 gactaaaactaaaacatgtaaaatgataactattgtgaaaagaggacttgtatattttaaaaa 41910281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 177
Target Start/End: Original strand, 20719908 - 20719970
Alignment:
Q  116 agtgttatttgaacaaccatttgagacaatttttataacaacttctttt-tctctcttttcat 177  Q
    |||| |||||||||| ||||||||||||| |||| | |||||||||||| |||||||||||||    
T  20719908 agtgatatttgaacatccatttgagacaacttttgtgacaacttcttttctctctcttttcat 20719970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 177
Target Start/End: Original strand, 24431511 - 24431573
Alignment:
Q  116 agtgttatttgaacaaccatttgagacaatttttataacaacttc-tttttctctcttttcat 177  Q
    |||| |||||||||||||||||||||||| | || | |||||||| |||||||||||||||||    
T  24431511 agtgatatttgaacaaccatttgagacaactattgtgacaacttcatttttctctcttttcat 24431573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 538 - 580
Target Start/End: Original strand, 38451039 - 38451081
Alignment:
Q  538 ggactaaaactaaaacatgtaaaaggataattattttgagaag 580  Q
    |||||||||||||||||||||||||||||| |||| |||||||    
T  38451039 ggactaaaactaaaacatgtaaaaggataactattgtgagaag 38451081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 177
Target Start/End: Complemental strand, 34381185 - 34381128
Alignment:
Q  121 tatttgaacaaccatttgagacaatttttataacaacttc-tttttctctcttttcat 177  Q
    ||||||||||||||||||| | ||||||| | |||||||| |||||||||||||||||    
T  34381185 tatttgaacaaccatttgatataatttttgtgacaacttcgtttttctctcttttcat 34381128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 177
Target Start/End: Complemental strand, 39595447 - 39595390
Alignment:
Q  121 tatttgaacaaccatttgagacaatttttataacaacttct-ttttctctcttttcat 177  Q
    ||||||||||||||||||| |||| |||| | ||||||||| ||||||||||||||||    
T  39595447 tatttgaacaaccatttgatacaacttttgtgacaacttcttttttctctcttttcat 39595390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 115 - 177
Target Start/End: Complemental strand, 7927531 - 7927467
Alignment:
Q  115 cagtgttatttgaacaaccatttgagacaattttta-taacaacttctt-tttctctcttttcat 177  Q
    ||||| ||||||||||| ||||| | |||||||||| |||||||||||| |||||||||||||||    
T  7927531 cagtgatatttgaacaatcatttaatacaatttttagtaacaacttcttctttctctcttttcat 7927467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 116 - 177
Target Start/End: Original strand, 40566109 - 40566172
Alignment:
Q  116 agtgttatttgaacaaccatttgagacaatttttataacaacttct--ttttctctcttttcat 177  Q
    |||| |||||||||| ||||||||||||| |||| ||||||||| |  ||||||||||||||||    
T  40566109 agtgatatttgaacatccatttgagacaacttttttaacaactttttattttctctcttttcat 40566172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 11666354 - 11666295
Alignment:
Q  119 gttatttgaacaaccatttgagacaatttttataacaacttct-ttttctctcttttcat 177  Q
    |||||||||| |||||| ||||| || |||| ||||||||||| ||||||||||||||||    
T  11666354 gttatttgaaaaaccatatgagataacttttgtaacaacttcttttttctctcttttcat 11666295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 116 - 177
Target Start/End: Complemental strand, 125270 - 125208
Alignment:
Q  116 agtgttatttgaacaaccatttgagacaatttttataacaacttct-ttttctctcttttcat 177  Q
    |||| ||||||||||||||||||| |||| ||||   ||||||||| ||||||||||||||||    
T  125270 agtgatatttgaacaaccatttgatacaacttttgcgacaacttcttttttctctcttttcat 125208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 116 - 177
Target Start/End: Complemental strand, 3141674 - 3141612
Alignment:
Q  116 agtgttatttgaacaaccatttgagacaattttt-ataacaacttctttttctctcttttcat 177  Q
    |||| ||||||||||||||||| | |||| |||| || ||||||| |||||||||||||||||    
T  3141674 agtgatatttgaacaaccatttcatacaacttttgatgacaacttttttttctctcttttcat 3141612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 116 - 177
Target Start/End: Original strand, 27392595 - 27392657
Alignment:
Q  116 agtgttatttgaacaaccatttgagacaatttttataacaactt-ctttttctctcttttcat 177  Q
    |||||||||||||||||||| |||||||| |||| | |||||||  ||||| |||||||||||    
T  27392595 agtgttatttgaacaaccatatgagacaacttttgtgacaacttattttttttctcttttcat 27392657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 121 - 174
Target Start/End: Complemental strand, 29498300 - 29498246
Alignment:
Q  121 tatttgaacaaccatttgagacaatttttataacaacttctttt-tctctctttt 174  Q
    ||||||||||| |||||||||||| |||||| ||||||| |||| ||||||||||    
T  29498300 tatttgaacaatcatttgagacaaattttatgacaacttattttctctctctttt 29498246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 121 - 177
Target Start/End: Complemental strand, 42699222 - 42699166
Alignment:
Q  121 tatttgaacaaccatttgagacaatttttataacaacttctttttctctcttttcat 177  Q
    |||||||||||| |||| | |||| |||||||| || || |||||||||||||||||    
T  42699222 tatttgaacaactatttcatacaacttttataataatttttttttctctcttttcat 42699166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 121 - 165
Target Start/End: Complemental strand, 43482538 - 43482494
Alignment:
Q  121 tatttgaacaaccatttgagacaatttttataacaacttcttttt 165  Q
    |||||||||||| |||||| ||||||||| | |||||||||||||    
T  43482538 tatttgaacaactatttgatacaatttttgtgacaacttcttttt 43482494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 1e-36; HSPs: 41)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 540 - 634
Target Start/End: Original strand, 37060081 - 37060175
Alignment:
Q  540 actaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaacgagctctaa 634  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  37060081 actaaaactaaaacatgtaaaaggataactattgtgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggctctaa 37060175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 538 - 625
Target Start/End: Complemental strand, 5959055 - 5958968
Alignment:
Q  538 ggactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaac 625  Q
    |||||||||||||||||||||||||||||| ||||  |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  5959055 ggactaaaactaaaacatgtaaaaggataactattacgagaagaggacttgtatatttcaaaaactgaaaacaaaaactatttcaaac 5958968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 538 - 623
Target Start/End: Original strand, 15070390 - 15070475
Alignment:
Q  538 ggactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaa 623  Q
    |||||||||| ||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15070390 ggactaaaacaaaaacatataaaaggataactattgtgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaa 15070475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 542 - 625
Target Start/End: Original strand, 28107492 - 28107575
Alignment:
Q  542 taaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaac 625  Q
    |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  28107492 taaaactaaaacatgtaaaaggataactattgtgagaagaggatttgtatatttcaaaaactgaaaacaaaaattgtttcaaac 28107575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 536 - 634
Target Start/End: Original strand, 30609684 - 30609782
Alignment:
Q  536 gaggactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaacgagctctaa 634  Q
    |||||||||||||||||||||||||| ||||| |||| |||||||| || ||||||||||||| |||||||||||||||| |||||||||| |||||||    
T  30609684 gaggactaaaactaaaacatgtaaaatgataactattgtgagaagaagacttgtatatttcaataactgaaaacaaaaacgatttcaaacgggctctaa 30609782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 536 - 625
Target Start/End: Original strand, 6974515 - 6974604
Alignment:
Q  536 gaggactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaac 625  Q
    |||||||||||||||||||||||||| ||||| |||| ||||||||| | || |||||||||||||||||||||||||||||||||||||    
T  6974515 gaggactaaaactaaaacatgtaaaatgataactattgtgagaagagcacttatatatttcaaaaactgaaaacaaaaactatttcaaac 6974604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 538 - 621
Target Start/End: Complemental strand, 4382296 - 4382213
Alignment:
Q  538 ggactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttc 621  Q
    |||||||||||||||||||||||| ||||| |||| ||||||||| | ||||||||||||||||||||||||||||||||||||    
T  4382296 ggactaaaactaaaacatgtaaaatgataactattgtgagaagagaacttgtatatttcaaaaactgaaaacaaaaactatttc 4382213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 538 - 625
Target Start/End: Complemental strand, 21423454 - 21423367
Alignment:
Q  538 ggactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaac 625  Q
    |||||||||||||||||||||| ||||||| |||| ||||| || || ||||||||||||||||||||||||||||||||||||||||    
T  21423454 ggactaaaactaaaacatgtaataggataactattgtgagatgaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaac 21423367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 542 - 625
Target Start/End: Original strand, 24475936 - 24476019
Alignment:
Q  542 taaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaac 625  Q
    |||||||||||||||||||| ||||| |||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  24475936 taaaactaaaacatgtaaaaagataactattgtgataagaagatttgtatatttcaaaaactgaaaacaaaaactatttcaaac 24476019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 538 - 625
Target Start/End: Complemental strand, 27004538 - 27004451
Alignment:
Q  538 ggactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaac 625  Q
    |||||||||||||||||| ||||||||||| |||| ||||||||||| || ||||||||||||| |||||||||||||||||||||||    
T  27004538 ggactaaaactaaaacatataaaaggataactattgtgagaagaggacttatatatttcaaaaattgaaaacaaaaactatttcaaac 27004451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 536 - 634
Target Start/End: Complemental strand, 13274291 - 13274194
Alignment:
Q  536 gaggactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaacgagctctaa 634  Q
    ||||||||||||||||||||||||||| |||| |||| ||||||||||| |||||||||||||||| | |||||||||||||||||||||  |||||||    
T  13274291 gaggactaaaactaaaacatgtaaaag-ataactattgtgagaagaggacttgtatatttcaaaaattaaaaacaaaaactatttcaaacaggctctaa 13274194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 538 - 625
Target Start/End: Original strand, 37802836 - 37802923
Alignment:
Q  538 ggactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaac 625  Q
    |||||||||||||||||||||||| ||||| |||| |||||||| || |||||||||||||||| | |||||||||||||||||||||    
T  37802836 ggactaaaactaaaacatgtaaaaagataaatattatgagaagaagacttgtatatttcaaaaatttaaaacaaaaactatttcaaac 37802923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 543 - 625
Target Start/End: Original strand, 30393597 - 30393679
Alignment:
Q  543 aaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaac 625  Q
    |||||||||||||||||||||||||  ||| | | ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  30393597 aaaactaaaacatgtaaaaggataaccattatcaaaagaggacttgtatatttcaaaaactgaaaacaaaaactatttcaaac 30393679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 539 - 625
Target Start/End: Original strand, 5807321 - 5807406
Alignment:
Q  539 gactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaac 625  Q
    ||||||||||||||||| ||||||||||| |||| ||| ||| | ||||||||||||||||||||| ||||||||||||||||||||    
T  5807321 gactaaaactaaaacatataaaaggataactattgtgaaaagggaatttgtatatttcaaaaactg-aaacaaaaactatttcaaac 5807406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 540 - 625
Target Start/End: Original strand, 10217357 - 10217442
Alignment:
Q  540 actaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaac 625  Q
    ||||||||||||||||||||||| |||| |||| | | ||| | | ||||||||||||||||||||||| ||||||||||||||||    
T  10217357 actaaaactaaaacatgtaaaagaataactattctaaaaagggaacttgtatatttcaaaaactgaaaataaaaactatttcaaac 10217442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 538 - 625
Target Start/End: Complemental strand, 14786323 - 14786242
Alignment:
Q  538 ggactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaac 625  Q
    |||||||||||||||||||||| ||||||| |||| ||||||||||| ||||||||||||      ||||||||||||||||||||||    
T  14786323 ggactaaaactaaaacatgtaataggataactattgtgagaagaggacttgtatatttca------gaaaacaaaaactatttcaaac 14786242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 538 - 625
Target Start/End: Original strand, 37140127 - 37140221
Alignment:
Q  538 ggactaaaactaaaacatgtaaaaggataatt-------attttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaac 625  Q
    |||||||||||||||||||||||| ||||| |       |||  |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  37140127 ggactaaaactaaaacatgtaaaatgataagtgataactattgcgagaagaggacttgtatatttcaaaaactgaaaacaaaaactatttcaaac 37140221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 544 - 621
Target Start/End: Original strand, 43022888 - 43022964
Alignment:
Q  544 aaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttc 621  Q
    |||||||||||| ||||||||||||||| | |||||||||| |||||||||| ||||||| |||||||||| ||||||    
T  43022888 aaactaaaacatataaaaggataattatgt-gagaagaggacttgtatattttaaaaactaaaaacaaaaattatttc 43022964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 546 - 625
Target Start/End: Original strand, 22194291 - 22194370
Alignment:
Q  546 actaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaac 625  Q
    |||||||||||||||| ||||| |||| | | || |||| |||||||||||||||||  |||||||||||||||||||||    
T  22194291 actaaaacatgtaaaatgataactattataaaaaaaggacttgtatatttcaaaaaccaaaaacaaaaactatttcaaac 22194370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 538 - 593
Target Start/End: Original strand, 30757184 - 30757239
Alignment:
Q  538 ggactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatat 593  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||    
T  30757184 ggactaaaactaaaacatgtaaaaggataactattgtgagaagaggacttgtatat 30757239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 62 - 109
Target Start/End: Original strand, 18561860 - 18561907
Alignment:
Q  62 cgggcggctcgcctgaatgccgagtctttctccgccgccaactcgacg 109  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  18561860 cgggcggctcgcctgaatgtcgagtctttctgcgccgccaactcgacg 18561907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 177
Target Start/End: Original strand, 7086017 - 7086079
Alignment:
Q  116 agtgttatttgaacaaccatttgagacaatttttataacaacttctttt-tctctcttttcat 177  Q
    |||||||||||||||||||| ||||||||||||| | ||||||| |||| |||||||||||||    
T  7086017 agtgttatttgaacaaccatatgagacaatttttgtgacaacttattttctctctcttttcat 7086079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 177
Target Start/End: Complemental strand, 13104657 - 13104595
Alignment:
Q  116 agtgttatttgaacaaccatttgagacaatttttataacaactt-ctttttctctcttttcat 177  Q
    |||||||||||||||||||| ||||||||||||| | |||||||  |||||||||||||||||    
T  13104657 agtgttatttgaacaaccatatgagacaatttttgtgacaacttattttttctctcttttcat 13104595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 177
Target Start/End: Complemental strand, 14714164 - 14714102
Alignment:
Q  116 agtgttatttgaacaaccatttgagacaatttttataacaacttctttt-tctctcttttcat 177  Q
    |||| |||||||||| |||||||||||||||||| | |||||||||||| |||||||||||||    
T  14714164 agtgatatttgaacatccatttgagacaatttttgtgacaacttcttttctctctcttttcat 14714102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 177
Target Start/End: Complemental strand, 32750176 - 32750114
Alignment:
Q  116 agtgttatttgaacaaccatttgagacaatttttataacaactt-ctttttctctcttttcat 177  Q
    |||||||||||||||||||| ||||||||||||| | |||||||  |||||||||||||||||    
T  32750176 agtgttatttgaacaaccatatgagacaatttttgtgacaacttattttttctctcttttcat 32750114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 538 - 599
Target Start/End: Original strand, 7747945 - 7748006
Alignment:
Q  538 ggactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaa 599  Q
    |||||||||||||||||||||||| ||||| | || | ||||||||| ||||||||||||||    
T  7747945 ggactaaaactaaaacatgtaaaatgataactcttgtaagaagaggacttgtatatttcaaa 7748006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 542 - 603
Target Start/End: Complemental strand, 15431315 - 15431254
Alignment:
Q  542 taaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaact 603  Q
    |||||||||||||||||||||||||| ||||  | ||||||||  |||||||||||||||||    
T  15431315 taaaactaaaacatgtaaaaggataactattacgggaagaggacatgtatatttcaaaaact 15431254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 574 - 618
Target Start/End: Original strand, 27404651 - 27404695
Alignment:
Q  574 tgagaagaggatttgtatatttcaaaaactgaaaacaaaaactat 618  Q
    ||||||||||| |||||||||||||||||| ||||||||||||||    
T  27404651 tgagaagaggacttgtatatttcaaaaactaaaaacaaaaactat 27404695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 177
Target Start/End: Complemental strand, 34249759 - 34249696
Alignment:
Q  116 agtgttatttgaacaaccatttgagacaatttttataacaact--tctttttctctcttttcat 177  Q
    |||||||||||||||||||| ||||||||||||| | ||||||  | |||||||||||||||||    
T  34249759 agtgttatttgaacaaccatatgagacaatttttgtgacaacttatttttttctctcttttcat 34249696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 540 - 603
Target Start/End: Complemental strand, 27969574 - 27969511
Alignment:
Q  540 actaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaact 603  Q
    ||||||| |||||||| ||||||||||| |||| ||||||| | | ||||||||||||||||||    
T  27969574 actaaaattaaaacatataaaaggataactattgtgagaagtgaacttgtatatttcaaaaact 27969511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 118 - 177
Target Start/End: Complemental strand, 23880271 - 23880211
Alignment:
Q  118 tgttatttgaacaaccatttgagacaatttttataacaactt-ctttttctctcttttcat 177  Q
    |||||||||||||||||| |||||||| |||||| |||| ||  |||||||||||||||||    
T  23880271 tgttatttgaacaaccatatgagacaacttttatgacaatttattttttctctcttttcat 23880211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 116 - 177
Target Start/End: Complemental strand, 18917802 - 18917740
Alignment:
Q  116 agtgttatttgaacaaccatttgagacaatttttataacaacttct-ttttctctcttttcat 177  Q
    ||||||||||||||||| |  ||||||||||| | | ||||||||| ||||||||||||||||    
T  18917802 agtgttatttgaacaacaaaatgagacaatttatgtgacaacttcttttttctctcttttcat 18917740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 116 - 177
Target Start/End: Original strand, 36376744 - 36376806
Alignment:
Q  116 agtgttatttgaacaaccatttgagacaatttttataacaacttc-tttttctctcttttcat 177  Q
    |||| |||||||||| | | |||||| ||||||| |||||||||| |||||||||||||||||    
T  36376744 agtgatatttgaacatctaattgagataatttttttaacaacttcttttttctctcttttcat 36376806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 121 - 177
Target Start/End: Original strand, 36763417 - 36763475
Alignment:
Q  121 tatttgaacaaccatttgaga-caatttttataacaac-ttctttttctctcttttcat 177  Q
    ||||||||||||||||||  | |||||||||| ||||| ||||||||||||||||||||    
T  36763417 tatttgaacaaccatttgttaacaatttttatgacaaccttctttttctctcttttcat 36763475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 116 - 177
Target Start/End: Complemental strand, 42081215 - 42081153
Alignment:
Q  116 agtgttatttgaacaaccatttgagacaatttttataacaacttct-ttttctctcttttcat 177  Q
    |||| ||||||||||   |||||||||||||||| ||||||||||| |||||||| |||||||    
T  42081215 agtgatatttgaacattaatttgagacaatttttttaacaacttcttttttctctattttcat 42081153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 165
Target Start/End: Original strand, 1876245 - 1876294
Alignment:
Q  116 agtgttatttgaacaaccatttgagacaatttttataacaacttcttttt 165  Q
    |||||||||| ||||||||| |||||||| |||| | |||||||||||||    
T  1876245 agtgttatttcaacaaccatatgagacaacttttgtgacaacttcttttt 1876294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 177
Target Start/End: Original strand, 11164274 - 11164331
Alignment:
Q  121 tatttgaacaaccatttgagacaatttttataacaacttc-tttttctctcttttcat 177  Q
    |||||||||||| |||||| |||| |||| | |||||||| |||||||||||||||||    
T  11164274 tatttgaacaactatttgatacaacttttgtgacaacttcttttttctctcttttcat 11164331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 177
Target Start/End: Original strand, 19695585 - 19695646
Alignment:
Q  116 agtgttatttgaacaaccatttgagacaatttttataacaacttctttttctctcttttcat 177  Q
    |||||||||||||||||||  |||||||| || | | ||||||| |||| ||||||||||||    
T  19695585 agtgttatttgaacaaccaaatgagacaacttatgtgacaactttttttcctctcttttcat 19695646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 177
Target Start/End: Complemental strand, 22390325 - 22390268
Alignment:
Q  121 tatttgaacaaccatttgagacaatttttataacaacttctttt-tctctcttttcat 177  Q
    |||||||||| ||||||||||||| | || | |||||||||||| |||||||||||||    
T  22390325 tatttgaacatccatttgagacaactcttgtgacaacttcttttctctctcttttcat 22390268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 177
Target Start/End: Original strand, 45515497 - 45515554
Alignment:
Q  121 tatttgaacaaccatttgagacaattttta-taacaacttctttttctctcttttcat 177  Q
    ||||||||||||||||| | |||| ||||  | |||||||||||||||||||||||||    
T  45515497 tatttgaacaaccatttcatacaacttttggtgacaacttctttttctctcttttcat 45515554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 118 - 177
Target Start/End: Complemental strand, 1889323 - 1889263
Alignment:
Q  118 tgttatttgaacaaccatttgagacaatttttataacaacttct-ttttctctcttttcat 177  Q
    |||||||||||||| ||  ||||||||||| | | ||||||||| ||||||||||||||||    
T  1889323 tgttatttgaacaatcaaatgagacaatttatgtgacaacttcttttttctctcttttcat 1889263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0306 (Bit Score: 76; Significance: 8e-35; HSPs: 1)
Name: scaffold0306
Description:

Target: scaffold0306; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 538 - 625
Target Start/End: Original strand, 13056 - 13143
Alignment:
Q  538 ggactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaac 625  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  13056 ggactaaaactaaaacatgtaaaaggataactattgtgagaagaggacttgtatatttcaaaaactgaaaacaaaaactatttcaaac 13143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0152 (Bit Score: 76; Significance: 8e-35; HSPs: 1)
Name: scaffold0152
Description:

Target: scaffold0152; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 538 - 625
Target Start/End: Complemental strand, 22271 - 22184
Alignment:
Q  538 ggactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaac 625  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  22271 ggactaaaactaaaacatgtaaaaggataactattgtgagaagaggacttgtatatttcaaaaactgaaaacaaaaactatttcaaac 22184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 75; Significance: 3e-34; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 538 - 624
Target Start/End: Original strand, 36404222 - 36404308
Alignment:
Q  538 ggactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaa 624  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  36404222 ggactaaaactaaaacatgtaaaaggataactattgtgagaagaggacttgtatatttcaaaaactgaaaacaaaaactatttcaaa 36404308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 536 - 625
Target Start/End: Complemental strand, 45603075 - 45602986
Alignment:
Q  536 gaggactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaac 625  Q
    |||||||||||||||||||||||||||||||| |||| ||| |||| || ||||||||||||||||||||||||||||||||||||||||    
T  45603075 gaggactaaaactaaaacatgtaaaaggataactattgtgataagatgacttgtatatttcaaaaactgaaaacaaaaactatttcaaac 45602986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 538 - 625
Target Start/End: Complemental strand, 39392046 - 39391959
Alignment:
Q  538 ggactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaac 625  Q
    |||||||||||||||||||||||||||||| |||| ||| ||||  | ||||||||||||||||||||||||||||||||||||||||    
T  39392046 ggactaaaactaaaacatgtaaaaggataactattgtgaaaagaaaacttgtatatttcaaaaactgaaaacaaaaactatttcaaac 39391959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 538 - 625
Target Start/End: Complemental strand, 29360571 - 29360484
Alignment:
Q  538 ggactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaac 625  Q
    |||||||||||||||||||||||||||||| || | ||||||||||| ||||||||||||||||||||||| ||||| | ||||||||    
T  29360571 ggactaaaactaaaacatgtaaaaggataactactgtgagaagaggacttgtatatttcaaaaactgaaaagaaaaattgtttcaaac 29360484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 540 - 625
Target Start/End: Complemental strand, 35534569 - 35534484
Alignment:
Q  540 actaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaac 625  Q
    |||||||||||||||| ||||| ||||| |||| |||||||| || ||||||||||||||||||||||||||||||||||| ||||    
T  35534569 actaaaactaaaacatataaaatgataactattgtgagaagaagacttgtatatttcaaaaactgaaaacaaaaactattttaaac 35534484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 536 - 625
Target Start/End: Original strand, 37115885 - 37115974
Alignment:
Q  536 gaggactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaac 625  Q
    |||||||||||||||||||| ||||| ||||| ||||  ||||||| || || |||||||||||||||||||||||||||||||||||||    
T  37115885 gaggactaaaactaaaacatataaaatgataactattgcgagaagatgacttatatatttcaaaaactgaaaacaaaaactatttcaaac 37115974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 543 - 615
Target Start/End: Original strand, 16353494 - 16353566
Alignment:
Q  543 aaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaac 615  Q
    ||||||||||||||||||||||||| |||| ||| ||||||| ||||||||||||||||||||||||||||||    
T  16353494 aaaactaaaacatgtaaaaggataactattgtgaaaagaggacttgtatatttcaaaaactgaaaacaaaaac 16353566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 536 - 634
Target Start/End: Complemental strand, 52742443 - 52742345
Alignment:
Q  536 gaggactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaacgagctctaa 634  Q
    ||||| ||||||||||| |||||||| ||||| ||||  || ||||| ||||||||||||||||||||| ||||||||||||||||||||  |||||||    
T  52742443 gaggattaaaactaaaatatgtaaaatgataactattgcgataagagaatttgtatatttcaaaaactggaaacaaaaactatttcaaacaggctctaa 52742345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 544 - 634
Target Start/End: Complemental strand, 14201798 - 14201710
Alignment:
Q  544 aaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaacgagctctaa 634  Q
    ||||||||||||||||||| |||| |||| ||| ||||||| ||  ||||||||||||||||||||||||||||||||||||  |||||||    
T  14201798 aaactaaaacatgtaaaagaataactattgtgaaaagaggactt--atatttcaaaaactgaaaacaaaaactatttcaaacaggctctaa 14201710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 538 - 625
Target Start/End: Complemental strand, 46487358 - 46487272
Alignment:
Q  538 ggactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaac 625  Q
    |||||||||||||||||| ||||| ||||| |||| |||||||| || || |||||||||||||||||||| ||||||||||||||||    
T  46487358 ggactaaaactaaaacatataaaatgataactattgtgagaagaagacttatatatttcaaaaactgaaaa-aaaaactatttcaaac 46487272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 539 - 602
Target Start/End: Complemental strand, 47599452 - 47599389
Alignment:
Q  539 gactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaac 602  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| ||||||    
T  47599452 gactaaaactaaaacatgtaaaaggataactattgtgagaagaggatttgtatattttaaaaac 47599389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 540 - 610
Target Start/End: Complemental strand, 48644608 - 48644538
Alignment:
Q  540 actaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaaca 610  Q
    |||||||||||||||||||||| ||||| |||| |||||||| ||||||||||||||||||| ||||||||    
T  48644608 actaaaactaaaacatgtaaaatgataaatattgtgagaagatgatttgtatatttcaaaaattgaaaaca 48644538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 538 - 624
Target Start/End: Original strand, 48944105 - 48944191
Alignment:
Q  538 ggactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaa 624  Q
    |||||||||| ||||||||||||| ||||| |||| | ||||||||| ||||||||||||||| || |||| |||||||||||||||    
T  48944105 ggactaaaacaaaaacatgtaaaatgataactattgtaagaagaggacttgtatatttcaaaagctaaaaagaaaaactatttcaaa 48944191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 538 - 611
Target Start/End: Original strand, 54882992 - 54883065
Alignment:
Q  538 ggactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaa 611  Q
    ||||||||||||||||| |||||||||||| |||| ||||||||||| || |||||||||||||| ||||||||    
T  54882992 ggactaaaactaaaacacgtaaaaggataaatattgtgagaagaggacttctatatttcaaaaaccgaaaacaa 54883065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 538 - 613
Target Start/End: Original strand, 3618340 - 3618415
Alignment:
Q  538 ggactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaa 613  Q
    |||||||||||||||||||||||| ||||| |||| ||||||||  | |||||||||||| |||||||||||||||    
T  3618340 ggactaaaactaaaacatgtaaaaagataaatattgtgagaagaaaacttgtatatttcagaaactgaaaacaaaa 3618415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 116 - 177
Target Start/End: Complemental strand, 33007539 - 33007476
Alignment:
Q  116 agtgttatttgaacaaccatttgagacaatttttataacaacttct--ttttctctcttttcat 177  Q
    |||||||||||||||||||| ||||||||||||| | |||||||||  ||||||||||||||||    
T  33007539 agtgttatttgaacaaccatatgagacaatttttgtgacaacttctttttttctctcttttcat 33007476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 177
Target Start/End: Original strand, 41111965 - 41112027
Alignment:
Q  116 agtgttatttgaacaaccatttgagacaatttttataacaacttctttt-tctctcttttcat 177  Q
    |||| |||||||||| ||||||||||||| |||| |||||||||||||| |||||||||||||    
T  41111965 agtgatatttgaacatccatttgagacaacttttttaacaacttcttttctctctcttttcat 41112027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 177
Target Start/End: Complemental strand, 49131032 - 49130970
Alignment:
Q  116 agtgttatttgaacaaccatttgagacaatttttataacaacttctttt-tctctcttttcat 177  Q
    |||| |||||||||| |||||||||||||||||| | |||||||||||| |||||||||||||    
T  49131032 agtgatatttgaacatccatttgagacaatttttgtgacaacttcttttctctctcttttcat 49130970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 121 - 177
Target Start/End: Complemental strand, 46473301 - 46473244
Alignment:
Q  121 tatttgaacaaccatttgagacaatttttataacaacttct-ttttctctcttttcat 177  Q
    ||||||||||||||||||| |||| |||||| ||||||||| ||||||||||||||||    
T  46473301 tatttgaacaaccatttgatacaacttttatgacaacttcttttttctctcttttcat 46473244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 177
Target Start/End: Complemental strand, 11173623 - 11173566
Alignment:
Q  121 tatttgaacaaccatttgagacaatttttataacaacttct-ttttctctcttttcat 177  Q
    ||||||||||||||||||| |||| |||| | ||||||||| ||||||||||||||||    
T  11173623 tatttgaacaaccatttgatacaacttttgtgacaacttcttttttctctcttttcat 11173566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 116 - 174
Target Start/End: Complemental strand, 31997981 - 31997921
Alignment:
Q  116 agtgttatttgaacaaccatttgagacaa-tttttataacaacttctttt-tctctctttt 174  Q
    |||| |||||||||||||||||||||||| |||| || |||||||||||| ||||||||||    
T  31997981 agtgatatttgaacaaccatttgagacaacttttgatgacaacttcttttctctctctttt 31997921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 116 - 177
Target Start/End: Original strand, 24551120 - 24551182
Alignment:
Q  116 agtgttatttgaacaaccatttgagacaatttttataacaacttc-tttttctctcttttcat 177  Q
    |||||||||||||||| ||  ||||||||||| | | |||||||| |||||||||||||||||    
T  24551120 agtgttatttgaacaatcaaatgagacaatttatgtgacaacttcttttttctctcttttcat 24551182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 116 - 177
Target Start/End: Complemental strand, 28269984 - 28269922
Alignment:
Q  116 agtgttatttgaacaaccatttgagacaatttttataacaacttct-ttttctctcttttcat 177  Q
    |||||||||||||||||||| |||||||| ||||   ||||||||| |||||| |||||||||    
T  28269984 agtgttatttgaacaaccatatgagacaacttttgcgacaacttcttttttctatcttttcat 28269922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 116 - 177
Target Start/End: Complemental strand, 29706081 - 29706019
Alignment:
Q  116 agtgttatttgaacaaccatttgagacaatttttataacaacttct-ttttctctcttttcat 177  Q
    |||| |||||||||||| |||||| |||| |||| | ||||||||| ||||||||||||||||    
T  29706081 agtgatatttgaacaactatttgatacaacttttgtgacaacttcttttttctctcttttcat 29706019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 120 - 177
Target Start/End: Original strand, 37215128 - 37215186
Alignment:
Q  120 ttatttgaacaaccatttgagacaatttttataacaactt-ctttttctctcttttcat 177  Q
    |||||||||||||||| |||||||| |||| | |||||||  |||||||||||||||||    
T  37215128 ttatttgaacaaccatatgagacaacttttgtgacaacttattttttctctcttttcat 37215186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 116 - 177
Target Start/End: Original strand, 37302967 - 37303029
Alignment:
Q  116 agtgttatttgaacaaccatttgagacaatttttataacaacttc-tttttctctcttttcat 177  Q
    |||||||||||||||| ||| |||||||| |||| | |||| ||| |||||||||||||||||    
T  37302967 agtgttatttgaacaagcatatgagacaacttttgtgacaatttcttttttctctcttttcat 37303029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 177
Target Start/End: Complemental strand, 8066532 - 8066471
Alignment:
Q  116 agtgttatttgaacaaccatttgagacaatttttataacaacttctttttctctcttttcat 177  Q
    |||||||||| ||||| ||| |||||||| | || | ||||||| |||||||||||||||||    
T  8066532 agtgttatttaaacaatcatatgagacaactattgtgacaacttatttttctctcttttcat 8066471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 177
Target Start/End: Original strand, 19418058 - 19418115
Alignment:
Q  121 tatttgaacaaccatttgagacaatttttataacaacttctttt-tctctcttttcat 177  Q
    |||||||||| ||||||||||||| | || | |||||||||||| |||||||||||||    
T  19418058 tatttgaacatccatttgagacaactcttgtgacaacttcttttctctctcttttcat 19418115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 5e-33; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 538 - 625
Target Start/End: Original strand, 36609413 - 36609501
Alignment:
Q  538 ggactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactg-aaaacaaaaactatttcaaac 625  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  36609413 ggactaaaactaaaacatgtaaaaggataactattgtgagaagaggatttgtatatttcaaaaactgaaaaacaaaaactatttcaaac 36609501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 538 - 625
Target Start/End: Complemental strand, 21555469 - 21555382
Alignment:
Q  538 ggactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaac 625  Q
    |||||||||||||||||||||||||||||| |||| |||||||| || || |||||||||||||||||||||||||||||||||||||    
T  21555469 ggactaaaactaaaacatgtaaaaggataactattgtgagaagaagacttatatatttcaaaaactgaaaacaaaaactatttcaaac 21555382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 536 - 625
Target Start/End: Complemental strand, 12701129 - 12701040
Alignment:
Q  536 gaggactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaac 625  Q
    ||||||||||||||||||||||||||| |||| |||| | |||||| || ||||||||||||||||||||||||||||||||||||||||    
T  12701129 gaggactaaaactaaaacatgtaaaagaataactattgtaagaagaagacttgtatatttcaaaaactgaaaacaaaaactatttcaaac 12701040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 544 - 625
Target Start/End: Original strand, 56100144 - 56100225
Alignment:
Q  544 aaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaac 625  Q
    |||||||||||||||||||||||| ||||  |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  56100144 aaactaaaacatgtaaaaggataactattgcgagaagaggacttgtatatttcaaaaactgaaaacaaaaactatttcaaac 56100225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 538 - 625
Target Start/End: Complemental strand, 35929796 - 35929709
Alignment:
Q  538 ggactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaac 625  Q
    |||||||||||||||||| ||||| ||||| |||| ||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  35929796 ggactaaaactaaaacatataaaatgataactattgtgagaagaggacttatatatttcaaaaactgaaaacaaaaactatttcaaac 35929709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 538 - 638
Target Start/End: Complemental strand, 23249559 - 23249459
Alignment:
Q  538 ggactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaacgagctctaaata 637  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||  ||||||||||||||||| ||||||||||| | ||||||||  |||||| |||    
T  23249559 ggactaaaactaaaacatgtaaaaggataactattgtgagaagagggcttgtatatttcaaaaaccgaaaacaaaaattgtttcaaacaggctctagata 23249460  T
Q  638 t 638  Q
    |    
T  23249459 t 23249459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 538 - 625
Target Start/End: Complemental strand, 19598456 - 19598369
Alignment:
Q  538 ggactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaac 625  Q
    |||||||||||||||||||||||| || || ||||||||||| | || ||||||||||| ||||||||||||||||||||||||||||    
T  19598456 ggactaaaactaaaacatgtaaaaagaaaactattttgagaaaatgacttgtatatttcgaaaactgaaaacaaaaactatttcaaac 19598369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 539 - 616
Target Start/End: Complemental strand, 827917 - 827840
Alignment:
Q  539 gactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaact 616  Q
    ||||||||||||||||||||||| ||||| |||| ||||||||||| ||||||||||||||||| |||||||||||||    
T  827917 gactaaaactaaaacatgtaaaaagataactattgtgagaagaggacttgtatatttcaaaaaccgaaaacaaaaact 827840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 539 - 625
Target Start/End: Complemental strand, 35749473 - 35749387
Alignment:
Q  539 gactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaac 625  Q
    ||||||||||||||||| ||||| |||||||||| |||||||| || |||||||||||||||| |||||| ||||| ||||||||||    
T  35749473 gactaaaactaaaacatataaaaagataattattatgagaagatgacttgtatatttcaaaaattgaaaataaaaattatttcaaac 35749387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 543 - 625
Target Start/End: Complemental strand, 41842871 - 41842790
Alignment:
Q  543 aaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaac 625  Q
    |||||||||||||||||||| ||||  ||| |||||| |||||||||||||||||||||| ||||||||||||||||||||||    
T  41842871 aaaactaaaacatgtaaaag-ataacaattgtgagaaaaggatttgtatatttcaaaaaccgaaaacaaaaactatttcaaac 41842790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 536 - 602
Target Start/End: Complemental strand, 27733467 - 27733401
Alignment:
Q  536 gaggactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaac 602  Q
    |||||||||||||||||||||||||||||||| |||| ||||||||||  |||||||||||||||||    
T  27733467 gaggactaaaactaaaacatgtaaaaggataactattgtgagaagaggtcttgtatatttcaaaaac 27733401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 538 - 634
Target Start/End: Original strand, 44243696 - 44243792
Alignment:
Q  538 ggactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaacgagctctaa 634  Q
    ||||||||| |||||||| ||||||||||| |||| | |||||| || |||||||||||||||||| |||||||||  ||||||||||  |||||||    
T  44243696 ggactaaaattaaaacatataaaaggataactattgtaagaagatgacttgtatatttcaaaaactaaaaacaaaatttatttcaaacaggctctaa 44243792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 574 - 637
Target Start/End: Original strand, 53584602 - 53584665
Alignment:
Q  574 tgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaacgagctctaaata 637  Q
    |||||||| || ||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  53584602 tgagaagatgacttgtatatttcaaaaactgaaaacaaaaactatttcaaacatgctctaaata 53584665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 115 - 177
Target Start/End: Complemental strand, 51389495 - 51389432
Alignment:
Q  115 cagtgttatttgaacaaccatttgagacaatttttataacaacttct-ttttctctcttttcat 177  Q
    ||||| ||||||||||||||||||| |||| |||| | ||||||||| ||||||||||||||||    
T  51389495 cagtgatatttgaacaaccatttgatacaacttttgtgacaacttcttttttctctcttttcat 51389432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 177
Target Start/End: Complemental strand, 55927162 - 55927100
Alignment:
Q  116 agtgttatttgaacaaccatttgagacaatttttataacaacttctttt-tctctcttttcat 177  Q
    |||| |||||||||| |||||||||||||||||| | |||| ||||||| |||||||||||||    
T  55927162 agtgatatttgaacatccatttgagacaatttttgtgacaatttcttttctctctcttttcat 55927100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 177
Target Start/End: Original strand, 16004220 - 16004281
Alignment:
Q  116 agtgttatttgaacaaccatttgagacaatttttataacaacttctttttctctcttttcat 177  Q
    |||| |||||||||| ||||||||||||| | || | ||||||| |||||||||||||||||    
T  16004220 agtgatatttgaacatccatttgagacaactcttgtgacaacttttttttctctcttttcat 16004281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 118 - 177
Target Start/End: Original strand, 38844385 - 38844445
Alignment:
Q  118 tgttatttgaacaaccatttgagacaatttttataacaacttctttt-tctctcttttcat 177  Q
    |||||||||||||||||| |||||||| |||| | ||||||| |||| |||||||||||||    
T  38844385 tgttatttgaacaaccatatgagacaacttttgtgacaacttattttctctctcttttcat 38844445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 174
Target Start/End: Original strand, 5123483 - 5123542
Alignment:
Q  116 agtgttatttgaacaaccatttgagacaatttttataacaactt-ctttttctctctttt 174  Q
    |||||||||||||||||||| |||||||| |||| | |||||||  ||||||||||||||    
T  5123483 agtgttatttgaacaaccatatgagacaacttttgtgacaacttattttttctctctttt 5123542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 116 - 177
Target Start/End: Original strand, 25523089 - 25523151
Alignment:
Q  116 agtgttatttgaacaaccatttgagacaatttttataacaacttctttt-tctctcttttcat 177  Q
    |||||||||||||||||||| |||||||| |||| | | ||||| |||| |||||||||||||    
T  25523089 agtgttatttgaacaaccatatgagacaacttttgtgataacttattttctctctcttttcat 25523151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 116 - 177
Target Start/End: Original strand, 28480431 - 28480493
Alignment:
Q  116 agtgttatttgaacaaccatttgagacaatttttataacaacttctttt-tctctcttttcat 177  Q
    |||| |||||||||||| ||||||||||| | || | |||||||||||| |||||||||||||    
T  28480431 agtgatatttgaacaactatttgagacaactattgtgacaacttcttttctctctcttttcat 28480493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 116 - 177
Target Start/End: Original strand, 28481305 - 28481367
Alignment:
Q  116 agtgttatttgaacaaccatttgagacaatttttataacaacttctttt-tctctcttttcat 177  Q
    |||| |||||||||||| ||||||||||| | || | |||||||||||| |||||||||||||    
T  28481305 agtgatatttgaacaactatttgagacaactattgtgacaacttcttttctctctcttttcat 28481367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 116 - 177
Target Start/End: Original strand, 28482180 - 28482242
Alignment:
Q  116 agtgttatttgaacaaccatttgagacaatttttataacaacttctttt-tctctcttttcat 177  Q
    |||| |||||||||||| ||||||||||| | || | |||||||||||| |||||||||||||    
T  28482180 agtgatatttgaacaactatttgagacaactattgtgacaacttcttttctctctcttttcat 28482242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 116 - 177
Target Start/End: Complemental strand, 31275324 - 31275262
Alignment:
Q  116 agtgttatttgaacaaccatttgagacaatttttataacaacttc-tttttctctcttttcat 177  Q
    |||| ||||||||||||||||||| |||| |||| | |||| ||| |||||||||||||||||    
T  31275324 agtgatatttgaacaaccatttgatacaacttttgtgacaatttcttttttctctcttttcat 31275262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 116 - 177
Target Start/End: Original strand, 42915112 - 42915174
Alignment:
Q  116 agtgttatttgaacaaccatttgagacaatttttataacaacttc-tttttctctcttttcat 177  Q
    |||| |||||||||||| |||||| |||| |||| | |||||||| |||||||||||||||||    
T  42915112 agtgatatttgaacaactatttgatacaacttttgtgacaacttcttttttctctcttttcat 42915174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 538 - 578
Target Start/End: Original strand, 53583471 - 53583511
Alignment:
Q  538 ggactaaaactaaaacatgtaaaaggataattattttgaga 578  Q
    |||||||||||||||||||||||||||| | |||| |||||    
T  53583471 ggactaaaactaaaacatgtaaaaggattactattgtgaga 53583511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 71; Significance: 8e-32; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 538 - 624
Target Start/End: Original strand, 2814890 - 2814976
Alignment:
Q  538 ggactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaa 624  Q
    |||||||||||||||||||||||| ||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  2814890 ggactaaaactaaaacatgtaaaatgataactattgtgagaagaggacttgtatatttcaaaaactgaaaacaaaaactatttcaaa 2814976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 538 - 625
Target Start/End: Complemental strand, 444610 - 444523
Alignment:
Q  538 ggactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaac 625  Q
    |||||||||||||||||||||| ||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||    
T  444610 ggactaaaactaaaacatgtaataggataactattgtgagaagaggacttgtatatttcaaaaactgaaaacaaaaactattttaaac 444523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 539 - 625
Target Start/End: Original strand, 6200163 - 6200249
Alignment:
Q  539 gactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaac 625  Q
    |||||||||||||| |||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  6200163 gactaaaactaaaatatgtaaaaggataactattgtgagaagagaatttgtatatttcaaaaactgaaaacaaaaaatatttcaaac 6200249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 536 - 624
Target Start/End: Original strand, 26393987 - 26394075
Alignment:
Q  536 gaggactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaa 624  Q
    |||||||||||||||||||||||||| ||||| ||||  ||||||| ||||| ||||||||||||||||||||||||||||||||||||    
T  26393987 gaggactaaaactaaaacatgtaaaatgataaatattgcgagaagaagatttttatatttcaaaaactgaaaacaaaaactatttcaaa 26394075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 538 - 624
Target Start/End: Original strand, 24640352 - 24640438
Alignment:
Q  538 ggactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaa 624  Q
    |||||||||||||||||| || |||||||| |||| ||||||||||| ||| |||||||||||||||||||||||||||||||||||    
T  24640352 ggactaaaactaaaacatatagaaggataactattatgagaagaggacttgcatatttcaaaaactgaaaacaaaaactatttcaaa 24640438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 538 - 634
Target Start/End: Complemental strand, 1067890 - 1067793
Alignment:
Q  538 ggactaaaactaaaacatgtaaaa-ggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaacgagctctaa 634  Q
    |||||||||||||||||| ||||| || ||| |||| ||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  1067890 ggactaaaactaaaacatataaaaagggtaactattgtgagaagagaacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaagctctaa 1067793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 542 - 625
Target Start/End: Complemental strand, 23774154 - 23774071
Alignment:
Q  542 taaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaac 625  Q
    |||||||||||||| ||||||||||| |||| ||||||||| | |||||||||||||||| | |||| ||||||||||||||||    
T  23774154 taaaactaaaacatataaaaggataactattatgagaagagaacttgtatatttcaaaaattaaaaataaaaactatttcaaac 23774071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 271 - 389
Target Start/End: Original strand, 24492720 - 24492838
Alignment:
Q  271 aacaaaaaattgaagttgtcacaaactttccttaattccaaaaaactaatgaaaactatttctccttcaaaattaaatctatttacactaatagagagac 370  Q
    |||||||||  |||||||||||||  |||||  |||||||||||||   |||||||||||| ||||| ||||||||||||||||||||| || ||| |||    
T  24492720 aacaaaaaacagaagttgtcacaatttttccccaattccaaaaaaccgttgaaaactatttttcctttaaaattaaatctatttacactgatggagggac 24492819  T
Q  371 aaagcatataaaattaaaa 389  Q
    | |  || |||||||||||    
T  24492820 ataatatctaaaattaaaa 24492838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 586 - 638
Target Start/End: Complemental strand, 12324213 - 12324161
Alignment:
Q  586 ttgtatatttcaaaaactgaaaacaaaaactatttcaaacgagctctaaatat 638  Q
    |||||||||||||||||||||||||||||||| |||||||  |||||||||||    
T  12324213 ttgtatatttcaaaaactgaaaacaaaaactacttcaaacaggctctaaatat 12324161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 177
Target Start/End: Original strand, 34021065 - 34021127
Alignment:
Q  116 agtgttatttgaacaaccatttgagacaatttttataacaacttctttt-tctctcttttcat 177  Q
    |||| |||||||||| ||||||||||||| |||| |||||||||||||| |||||||||||||    
T  34021065 agtgatatttgaacatccatttgagacaacttttttaacaacttcttttctctctcttttcat 34021127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 539 - 603
Target Start/End: Complemental strand, 34710199 - 34710135
Alignment:
Q  539 gactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaact 603  Q
    ||||||||||||||||| |||||| |||| || | ||||||||| | ||||||||||||||||||    
T  34710199 gactaaaactaaaacatataaaagaataactactgtgagaagagaacttgtatatttcaaaaact 34710135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 546 - 608
Target Start/End: Original strand, 2993592 - 2993654
Alignment:
Q  546 actaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaa 608  Q
    ||||||| || ||||||||||| |||| ||||||||| | |||||||||||||||||| ||||    
T  2993592 actaaaagatataaaaggataactattgtgagaagagaacttgtatatttcaaaaactaaaaa 2993654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 174
Target Start/End: Original strand, 21857462 - 21857521
Alignment:
Q  116 agtgttatttgaacaaccatttgagacaatttttataacaacttc-tttttctctctttt 174  Q
    |||| |||||||| ||| || ||||||||||||||| |||||||| ||||||||||||||    
T  21857462 agtgatatttgaataactatatgagacaatttttatgacaacttcttttttctctctttt 21857521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 116 - 177
Target Start/End: Complemental strand, 29383735 - 29383673
Alignment:
Q  116 agtgttatttgaacaaccatttgagacaatttttataacaacttct-ttttctctcttttcat 177  Q
    |||||||||||||||| ||  ||||||||||| | | ||||||||| ||||||||||||||||    
T  29383735 agtgttatttgaacaagcaaatgagacaatttatgtgacaacttcttttttctctcttttcat 29383673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 116 - 174
Target Start/End: Original strand, 32853037 - 32853094
Alignment:
Q  116 agtgttatttgaacaaccatttgagacaatttttataacaacttctttttctctctttt 174  Q
    |||| |||||||||||| |||||| ||||||||| | ||||||||||||| ||||||||    
T  32853037 agtgatatttgaacaactatttgatacaatttttgtgacaacttcttttt-tctctttt 32853094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 165
Target Start/End: Original strand, 31255358 - 31255403
Alignment:
Q  120 ttatttgaacaaccatttgagacaatttttataacaacttcttttt 165  Q
    |||||||| ||||||||||| |||| |||||| |||||||||||||    
T  31255358 ttatttgatcaaccatttgaaacaacttttatgacaacttcttttt 31255403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 3e-31; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 536 - 625
Target Start/End: Original strand, 4623848 - 4623937
Alignment:
Q  536 gaggactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaac 625  Q
    |||||||||||||||||||||||||||||||| |||| |||||||| || || |||||||||||||||||||||||||||||||||||||    
T  4623848 gaggactaaaactaaaacatgtaaaaggataactattgtgagaagatgacttatatatttcaaaaactgaaaacaaaaactatttcaaac 4623937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 543 - 624
Target Start/End: Complemental strand, 23403682 - 23403601
Alignment:
Q  543 aaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaa 624  Q
    ||||||||||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  23403682 aaaactaaaacatgtaaaaggataactattgtgagaagaggacttgtatatttcaaaaactgaaaacaaaaactatttcaaa 23403601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 539 - 624
Target Start/End: Original strand, 30204649 - 30204734
Alignment:
Q  539 gactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaa 624  Q
    ||||||||||||||||||||||||||||| |||| |||||||| || |||||||||||||||||||||||||||||||||||||||    
T  30204649 gactaaaactaaaacatgtaaaaggataactattgtgagaagatgacttgtatatttcaaaaactgaaaacaaaaactatttcaaa 30204734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 538 - 625
Target Start/End: Complemental strand, 21567796 - 21567709
Alignment:
Q  538 ggactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaac 625  Q
    |||||||||||||||||||||||| ||||| |||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  21567796 ggactaaaactaaaacatgtaaaaagataactattgtaagaagaggatttgtatatttctaaaactgaaaacaaaaactatttcaaac 21567709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 536 - 625
Target Start/End: Complemental strand, 16656069 - 16655980
Alignment:
Q  536 gaggactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaac 625  Q
    |||||||||||||||||||||||||| ||||| |||| |||||||| |  |||||||||| |||||||||||||||||||||||||||||    
T  16656069 gaggactaaaactaaaacatgtaaaatgataactattgtgagaagaaggcttgtatattttaaaaactgaaaacaaaaactatttcaaac 16655980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 555 - 636
Target Start/End: Complemental strand, 22798613 - 22798532
Alignment:
Q  555 tgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaacgagctctaaat 636  Q
    ||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||  |||||||||    
T  22798613 tgtaaaaggataactattgtgagaagaggacttgtatatttcaaaaactgaaaacaaaaactatttcaaacaggctctaaat 22798532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 536 - 636
Target Start/End: Complemental strand, 37630093 - 37629993
Alignment:
Q  536 gaggactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaacgagctctaaa 635  Q
    |||||||||||||||||||||||||||| ||| ||||  |||||||||  || ||||||| |||||||||||||||||||||||||||||  ||||||||    
T  37630093 gaggactaaaactaaaacatgtaaaaggctaactattgcgagaagagggcttatatatttaaaaaactgaaaacaaaaactatttcaaacaggctctaaa 37629994  T
Q  636 t 636  Q
    |    
T  37629993 t 37629993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 538 - 624
Target Start/End: Original strand, 36470135 - 36470222
Alignment:
Q  538 ggactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactg-aaaacaaaaactatttcaaa 624  Q
    |||||||||||||||||||||||||||||| |||| |||||||| || ||||||||||||||||||| |||||||||| |||||||||    
T  36470135 ggactaaaactaaaacatgtaaaaggataactattgtgagaagatgacttgtatatttcaaaaactgaaaaacaaaaattatttcaaa 36470222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 543 - 625
Target Start/End: Original strand, 3001382 - 3001464
Alignment:
Q  543 aaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaac 625  Q
    ||||||||||||||||||| |||||  ||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  3001382 aaaactaaaacatgtaaaaagataaccattgtgagaagaggacttgtatatttcaaaaactgaaaataaaaactatttcaaac 3001464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 542 - 625
Target Start/End: Complemental strand, 14842393 - 14842310
Alignment:
Q  542 taaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaac 625  Q
    ||||||||||| |||||||| ||||| |||| ||| ||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  14842393 taaaactaaaatatgtaaaatgataactattgtgaaaagaggacttgtatatttcaaaaactgaaaacaaaaattatttcaaac 14842310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 539 - 625
Target Start/End: Complemental strand, 4234266 - 4234180
Alignment:
Q  539 gactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaac 625  Q
    |||| |||||||||||||||||||| ||| ||||  ||||||| || ||||||||||||||||||||||||||||||||||| ||||    
T  4234266 gactcaaactaaaacatgtaaaaggctaactattgcgagaagatgacttgtatatttcaaaaactgaaaacaaaaactattttaaac 4234180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 542 - 624
Target Start/End: Original strand, 36046533 - 36046614
Alignment:
Q  542 taaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaa 624  Q
    |||||||||||||||||||||||||| |||| ||| |||  |||||||||||||||||||||| |||||||||||||||||||    
T  36046533 taaaactaaaacatgtaaaaggataactattgtgaaaaggagatttgtatatttcaaaaactg-aaacaaaaactatttcaaa 36046614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 538 - 624
Target Start/End: Complemental strand, 39436930 - 39436844
Alignment:
Q  538 ggactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaa 624  Q
    |||||||||||||||||| |||||  |||| |||| ||||||||||| |||||||||||||||| |||||||||||| |||||||||    
T  39436930 ggactaaaactaaaacatataaaaaaataactattgtgagaagaggacttgtatatttcaaaaattgaaaacaaaaattatttcaaa 39436844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 539 - 625
Target Start/End: Complemental strand, 41787584 - 41787498
Alignment:
Q  539 gactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaac 625  Q
    ||||||||||||||||||||||| ||||| |||| | ||||||| |||| ||||||| |||||||||||||||||||||||| ||||    
T  41787584 gactaaaactaaaacatgtaaaaagataactattgtaagaagagaatttatatattttaaaaactgaaaacaaaaactattttaaac 41787498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 536 - 620
Target Start/End: Original strand, 29958512 - 29958596
Alignment:
Q  536 gaggactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactattt 620  Q
    ||||| |||||||||||||||||||||||||| |||| | | |||| || ||||||||||||||||||||||||||||| |||||    
T  29958512 gaggattaaaactaaaacatgtaaaaggataactattgtaataagatgacttgtatatttcaaaaactgaaaacaaaaattattt 29958596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 543 - 624
Target Start/End: Original strand, 23275532 - 23275613
Alignment:
Q  543 aaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaa 624  Q
    |||||||||||||||||||| |||| ||   | | ||||||| |||||||||||||||||||||||||||||||||||||||    
T  23275532 aaaactaaaacatgtaaaagaataactaccgtaaaaagaggacttgtatatttcaaaaactgaaaacaaaaactatttcaaa 23275613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 116 - 177
Target Start/End: Complemental strand, 24503095 - 24503033
Alignment:
Q  116 agtgttatttgaacaaccatttgagacaatttttataacaacttc-tttttctctcttttcat 177  Q
    ||||||||||||| ||||||||||||||| |||||| |||||||| |||||||||||||||||    
T  24503095 agtgttatttgaataaccatttgagacaacttttatgacaacttcatttttctctcttttcat 24503033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 585 - 625
Target Start/End: Complemental strand, 4414268 - 4414228
Alignment:
Q  585 tttgtatatttcaaaaactgaaaacaaaaactatttcaaac 625  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  4414268 tttgtatatttcaaaaactgaaaacaaaaactatttcaaac 4414228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 116 - 177
Target Start/End: Complemental strand, 23258210 - 23258148
Alignment:
Q  116 agtgttatttgaacaaccatttgagacaatttttataacaacttct-ttttctctcttttcat 177  Q
    |||| ||||||||||||||||||| ||||||||| | ||||||||| ||||||||||||||||    
T  23258210 agtgatatttgaacaaccatttgaaacaatttttgtgacaacttcttttttctctcttttcat 23258148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 543 - 625
Target Start/End: Original strand, 45310021 - 45310102
Alignment:
Q  543 aaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaac 625  Q
    |||| ||||||||||||| | ||||  ||| ||| ||||| | |||||||||||||||| |||||||||||||||||||||||    
T  45310021 aaaaataaaacatgtaaa-gaataaccattatgaaaagagaacttgtatatttcaaaaattgaaaacaaaaactatttcaaac 45310102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 177
Target Start/End: Complemental strand, 40102201 - 40102139
Alignment:
Q  116 agtgttatttgaacaaccatttgagacaatttttataacaacttctttt-tctctcttttcat 177  Q
    |||||||||||||||||||| |||||||| |||| | ||||||| |||| |||||||||||||    
T  40102201 agtgttatttgaacaaccatatgagacaacttttgtgacaacttattttctctctcttttcat 40102139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 177
Target Start/End: Original strand, 40413256 - 40413318
Alignment:
Q  116 agtgttatttgaacaaccatttgagacaatttttataacaacttc-tttttctctcttttcat 177  Q
    |||| ||||||||||||||||||| |||| |||||| | |||||| |||||||||||||||||    
T  40413256 agtgatatttgaacaaccatttgatacaacttttatgataacttcttttttctctcttttcat 40413318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 177
Target Start/End: Complemental strand, 7678905 - 7678848
Alignment:
Q  121 tatttgaacaaccatttgagacaatttttataacaacttct-ttttctctcttttcat 177  Q
    |||||||||||| |||||| |||| |||| ||||||||||| ||||||||||||||||    
T  7678905 tatttgaacaactatttgatacaacttttgtaacaacttcttttttctctcttttcat 7678848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 121 - 177
Target Start/End: Complemental strand, 28927854 - 28927797
Alignment:
Q  121 tatttgaacaaccatttgagacaatttttataacaacttctttt-tctctcttttcat 177  Q
    ||||||||||||||||||| | ||||||| | |||||||||||| |||||||||||||    
T  28927854 tatttgaacaaccatttgataaaatttttgtgacaacttcttttctctctcttttcat 28927797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 118 - 177
Target Start/End: Complemental strand, 22767306 - 22767246
Alignment:
Q  118 tgttatttgaacaaccatttgagacaatttttataacaacttct-ttttctctcttttcat 177  Q
    |||||||||||||||| | |||||||| |||| | ||||||||| ||||||||||||||||    
T  22767306 tgttatttgaacaaccgtatgagacaacttttgtgacaacttcttttttctctcttttcat 22767246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 116 - 177
Target Start/End: Complemental strand, 3989083 - 3989021
Alignment:
Q  116 agtgttatttgaacaaccatttgagacaatttttataacaacttct-ttttctctcttttcat 177  Q
    |||||||||||||||||||  |||||||| || | | ||||||||| ||||||||||||||||    
T  3989083 agtgttatttgaacaaccaaatgagacaacttatgtgacaacttcttttttctctcttttcat 3989021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 136 - 177
Target Start/End: Original strand, 28473458 - 28473500
Alignment:
Q  136 ttgagacaatttttataacaacttc-tttttctctcttttcat 177  Q
    |||||||||||||| |||||||||| |||||||||||||||||    
T  28473458 ttgagacaatttttttaacaacttcttttttctctcttttcat 28473500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 116 - 177
Target Start/End: Original strand, 38128419 - 38128481
Alignment:
Q  116 agtgttatttgaacaaccatttgagacaatttttataacaacttc-tttttctctcttttcat 177  Q
    |||| ||||||||||||||||| | ||||||||| | |||||||| |||||||| ||||||||    
T  38128419 agtgatatttgaacaaccattttaaacaatttttgtgacaacttcttttttctcacttttcat 38128481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 116 - 177
Target Start/End: Original strand, 41344562 - 41344624
Alignment:
Q  116 agtgttatttgaacaaccatttgagacaatttttataacaacttctttt-tctctcttttcat 177  Q
    |||| |||||||||| ||||||||||||| | |||| | |||||||||| |||||||||||||    
T  41344562 agtgatatttgaacatccatttgagacaactcttatgataacttcttttctctctcttttcat 41344624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 133 - 177
Target Start/End: Complemental strand, 896068 - 896023
Alignment:
Q  133 catttgagacaatttttataacaacttct-ttttctctcttttcat 177  Q
    |||||||||||| |||| ||||||||||| ||||||||||||||||    
T  896068 catttgagacaacttttttaacaacttcttttttctctcttttcat 896023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 5e-30; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 538 - 625
Target Start/End: Complemental strand, 41326130 - 41326043
Alignment:
Q  538 ggactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaac 625  Q
    |||||||||||||||||||||||||||||| |||| |||||||| ||||| ||||||||||||||| |||||||||||||||||||||    
T  41326130 ggactaaaactaaaacatgtaaaaggataactattgtgagaagaagatttatatatttcaaaaactcaaaacaaaaactatttcaaac 41326043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 539 - 625
Target Start/End: Original strand, 8163644 - 8163730
Alignment:
Q  539 gactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaac 625  Q
    ||||||||||||||||||||||| ||||| |||| ||||||||| | ||||||||||||||||| ||||||||||||||||||||||    
T  8163644 gactaaaactaaaacatgtaaaaagataactattgtgagaagagaacttgtatatttcaaaaacagaaaacaaaaactatttcaaac 8163730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 538 - 625
Target Start/End: Original strand, 40337066 - 40337153
Alignment:
Q  538 ggactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaac 625  Q
    |||||||||||||||||||||||| ||||| |||| |||||||| || ||| ||||||| ||||||||||||||||||||||||||||    
T  40337066 ggactaaaactaaaacatgtaaaatgataactattgtgagaagatgacttgcatatttcgaaaactgaaaacaaaaactatttcaaac 40337153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 538 - 625
Target Start/End: Complemental strand, 28089223 - 28089135
Alignment:
Q  538 ggactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactg-aaaacaaaaactatttcaaac 625  Q
    |||||||||||||||||||||||| ||||| |||| | |||||| |||||||||||||||||||||| |||||||||| | ||||||||    
T  28089223 ggactaaaactaaaacatgtaaaatgataactattgtaagaagatgatttgtatatttcaaaaactgaaaaacaaaaattgtttcaaac 28089135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 539 - 625
Target Start/End: Original strand, 2362383 - 2362469
Alignment:
Q  539 gactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaac 625  Q
    |||||||||||||| | |||||| ||||| |||| |||||||| ||||||||||||| |||||||||||||||||| | ||||||||    
T  2362383 gactaaaactaaaataagtaaaatgataactattgtgagaagaagatttgtatattttaaaaactgaaaacaaaaattgtttcaaac 2362469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 543 - 625
Target Start/End: Original strand, 35589412 - 35589494
Alignment:
Q  543 aaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaac 625  Q
    |||||||||| || ||||||||||| |||| ||| ||||||| ||||||||||||||||  ||||||||||||||||||||||    
T  35589412 aaaactaaaatatataaaaggataactattatgaaaagaggacttgtatatttcaaaaatcgaaaacaaaaactatttcaaac 35589494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 538 - 593
Target Start/End: Original strand, 43403211 - 43403266
Alignment:
Q  538 ggactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatat 593  Q
    ||||||||||||||| |||||||||||||| |||| ||| ||||||| ||||||||    
T  43403211 ggactaaaactaaaatatgtaaaaggataactattatgataagaggacttgtatat 43403266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 177
Target Start/End: Original strand, 44894367 - 44894429
Alignment:
Q  116 agtgttatttgaacaaccatttgagacaatttttataacaacttctttt-tctctcttttcat 177  Q
    |||| |||||||||| |||||||||| ||||||| | |||||||||||| |||||||||||||    
T  44894367 agtgatatttgaacatccatttgagataatttttgtgacaacttcttttatctctcttttcat 44894429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 165
Target Start/End: Complemental strand, 10591330 - 10591281
Alignment:
Q  116 agtgttatttgaacaaccatttgagacaatttttataacaacttcttttt 165  Q
    |||| |||||||||||||||||||||||| |||| | |||||||||||||    
T  10591330 agtgatatttgaacaaccatttgagacaacttttgtgacaacttcttttt 10591281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 116 - 177
Target Start/End: Complemental strand, 5378805 - 5378743
Alignment:
Q  116 agtgttatttgaacaaccatttgagacaatttttataacaacttctttt-tctctcttttcat 177  Q
    |||| ||||| |||| ||||||||||||| |||| |||||| ||||||| |||||||||||||    
T  5378805 agtgatatttaaacatccatttgagacaacttttttaacaatttcttttctctctcttttcat 5378743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 121 - 174
Target Start/End: Original strand, 7390672 - 7390726
Alignment:
Q  121 tatttgaacaaccatttgagacaattttta-taacaacttctttttctctctttt 174  Q
    ||||||||||||||||| | |||||||||  | ||||||||||||||||||||||    
T  7390672 tatttgaacaaccatttcatacaatttttggtgacaacttctttttctctctttt 7390726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 116 - 177
Target Start/End: Original strand, 19510250 - 19510312
Alignment:
Q  116 agtgttatttgaacaaccatttgagacaatttttataacaactt-ctttttctctcttttcat 177  Q
    |||||||||||||||| ||| | |||||| |||| |||||||||  |||||||||||||||||    
T  19510250 agtgttatttgaacaatcatataagacaacttttgtaacaacttattttttctctcttttcat 19510312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 116 - 177
Target Start/End: Complemental strand, 46651850 - 46651788
Alignment:
Q  116 agtgttatttgaacaaccatttgagacaatttttataacaacttct-ttttctctcttttcat 177  Q
    |||| ||||||||||||||| ||| |||||| || | ||||||||| ||||||||||||||||    
T  46651850 agtgatatttgaacaaccatatgatacaattcttgtgacaacttctattttctctcttttcat 46651788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 177
Target Start/End: Original strand, 8792498 - 8792552
Alignment:
Q  121 tatttgaacaaccatttgagacaatttttataacaacttctttttctctcttttcat 177  Q
    ||||||||||||||||||| |||| |||| | ||||||  |||||||||||||||||    
T  8792498 tatttgaacaaccatttgatacaacttttgtgacaact--tttttctctcttttcat 8792552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 165
Target Start/End: Complemental strand, 41966506 - 41966457
Alignment:
Q  116 agtgttatttgaacaaccatttgagacaatttttataacaacttcttttt 165  Q
    |||| |||||||||||| |||| | ||||||||||| |||||||||||||    
T  41966506 agtgatatttgaacaactattttaaacaatttttatgacaacttcttttt 41966457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 589 - 625
Target Start/End: Complemental strand, 31637744 - 31637708
Alignment:
Q  589 tatatttcaaaaactgaaaacaaaaactatttcaaac 625  Q
    ||||||| ||||||||||||||||| |||||||||||    
T  31637744 tatattttaaaaactgaaaacaaaagctatttcaaac 31637708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 539 - 579
Target Start/End: Complemental strand, 31637802 - 31637762
Alignment:
Q  539 gactaaaactaaaacatgtaaaaggataattattttgagaa 579  Q
    ||||||||||||||||| ||||||||||| |||| ||||||    
T  31637802 gactaaaactaaaacatataaaaggataactattatgagaa 31637762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 536 - 634
Target Start/End: Original strand, 18501 - 18599
Alignment:
Q  536 gaggactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaacgagctctaa 634  Q
    |||||||||||||||||||||||||||||||| |||| |||||||| || |||||||||||||||||| ||| |||||||||||||||||  |||||||    
T  18501 gaggactaaaactaaaacatgtaaaaggataactattgtgagaagatgacttgtatatttcaaaaactaaaaccaaaaactatttcaaacaggctctaa 18599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 8e-29; HSPs: 35)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 536 - 625
Target Start/End: Original strand, 6750308 - 6750397
Alignment:
Q  536 gaggactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaac 625  Q
    |||||||||||||||||||||||||| ||||| |||| ||| ||  ||||||||||||||||||||||||||||||||||||||||||||    
T  6750308 gaggactaaaactaaaacatgtaaaaagataactattgtgaaaaagggatttgtatatttcaaaaactgaaaacaaaaactatttcaaac 6750397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 538 - 625
Target Start/End: Complemental strand, 39002036 - 39001949
Alignment:
Q  538 ggactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaac 625  Q
    |||||||||||||||||||||||||||||| ||||   | ||||||| ||||||||||||||||||||||||||||||||||||||||    
T  39002036 ggactaaaactaaaacatgtaaaaggataactattgcaaaaagaggacttgtatatttcaaaaactgaaaacaaaaactatttcaaac 39001949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 543 - 638
Target Start/End: Complemental strand, 794997 - 794902
Alignment:
Q  543 aaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaacgagctctaaatat 638  Q
    ||||||||||||||||||||||||| |||| |||||||| ||  |||||||||||||||||||||||||||| ||||||||||  || ||||||||    
T  794997 aaaactaaaacatgtaaaaggataactattgtgagaagaagacctgtatatttcaaaaactgaaaacaaaaaatatttcaaacatgccctaaatat 794902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 538 - 625
Target Start/End: Complemental strand, 3695495 - 3695408
Alignment:
Q  538 ggactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaac 625  Q
    |||||||||||||||||||||||| ||||| |||| ||| ||| ||| ||||||||||||||||| ||||||||||||||||||||||    
T  3695495 ggactaaaactaaaacatgtaaaatgataactattatgaaaaggggacttgtatatttcaaaaaccgaaaacaaaaactatttcaaac 3695408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 538 - 624
Target Start/End: Complemental strand, 18808867 - 18808781
Alignment:
Q  538 ggactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaa 624  Q
    |||||||||||||||||| ||||||||||| |||| |||||||| || |||||||||||| |||||||||||||||| |||||||||    
T  18808867 ggactaaaactaaaacatataaaaggataactattgtgagaagaagacttgtatatttcataaactgaaaacaaaaattatttcaaa 18808781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 540 - 634
Target Start/End: Original strand, 41998881 - 41998975
Alignment:
Q  540 actaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaacgagctctaa 634  Q
    |||||||||||||||| ||||| ||||| |||| |||||||| || |||||||||||||||| |||||||||||||||||||||||  |||||||    
T  41998881 actaaaactaaaacatataaaaagataaatattgtgagaagaagacttgtatatttcaaaaaatgaaaacaaaaactatttcaaacaggctctaa 41998975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 543 - 624
Target Start/End: Complemental strand, 571731 - 571650
Alignment:
Q  543 aaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaa 624  Q
    ||||||||||||||||||| ||||| |||| |||||||||||  | ||||||||||||||||||||||||||||||||||||    
T  571731 aaaactaaaacatgtaaaatgataactattatgagaagaggacgtatatatttcaaaaactgaaaacaaaaactatttcaaa 571650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 538 - 619
Target Start/End: Complemental strand, 11121946 - 11121865
Alignment:
Q  538 ggactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatt 619  Q
    |||||||||||||||||||||||| ||||| |||| || ||||| || ||||||||||||||||||||||||||||||||||    
T  11121946 ggactaaaactaaaacatgtaaaatgataactattgtgcgaagatgacttgtatatttcaaaaactgaaaacaaaaactatt 11121865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 543 - 625
Target Start/End: Original strand, 26653945 - 26654027
Alignment:
Q  543 aaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaac 625  Q
    |||| ||||||||||||||||||||  ||| |||||||||||  ||||||||||||||| |||||||||||||||||||||||    
T  26653945 aaaattaaaacatgtaaaaggataaccattgtgagaagaggacctgtatatttcaaaaattgaaaacaaaaactatttcaaac 26654027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 540 - 636
Target Start/End: Original strand, 24909510 - 24909606
Alignment:
Q  540 actaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaacgagctctaaat 636  Q
    |||||||| |||| |||||||||||||| |||| ||||||||| | | |||||||| |||||||||||| ||||||||||||||||  |||||||||    
T  24909510 actaaaacgaaaatatgtaaaaggataactattgtgagaagagaactagtatattttaaaaactgaaaataaaaactatttcaaacaggctctaaat 24909606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 549 - 634
Target Start/End: Complemental strand, 1585938 - 1585853
Alignment:
Q  549 aaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaacgagctctaa 634  Q
    ||||||||||||||||||| |||| | |||||| || |||||||||||||||||| |||||| ||||||||||||||  |||||||    
T  1585938 aaaacatgtaaaaggataactattgtaagaagaagacttgtatatttcaaaaactaaaaacataaactatttcaaacaggctctaa 1585853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 538 - 606
Target Start/End: Complemental strand, 36290680 - 36290612
Alignment:
Q  538 ggactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaa 606  Q
    |||||||||||||||||||||||| ||||| |||| | ||||||||| |||||||||||||||||||||    
T  36290680 ggactaaaactaaaacatgtaaaatgataactattgtcagaagaggacttgtatatttcaaaaactgaa 36290612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 543 - 632
Target Start/End: Original strand, 44272362 - 44272452
Alignment:
Q  543 aaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaa-actgaaaacaaaaactatttcaaacgagctct 632  Q
    |||||||||||||||||||  ||||  ||| ||| ||||| | ||||||||||||||| ||||||||||||||||||||||||| ||||||    
T  44272362 aaaactaaaacatgtaaaataataaccattatgaaaagagaacttgtatatttcaaaaaactgaaaacaaaaactatttcaaacaagctct 44272452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 177
Target Start/End: Original strand, 7645447 - 7645507
Alignment:
Q  116 agtgttatttgaacaaccatttgagacaatttttataacaacttctttttctctcttttcat 177  Q
    |||| |||||||||| |||||||||||||||||| |||||||||| ||||||||||||||||    
T  7645447 agtgatatttgaacatccatttgagacaatttttttaacaacttc-ttttctctcttttcat 7645507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 117 - 177
Target Start/End: Complemental strand, 28253192 - 28253131
Alignment:
Q  117 gtgttatttgaacaaccatttgagacaatttttataacaacttctttt-tctctcttttcat 177  Q
    ||||||||||||||||||| |||||||| |||| |||||||||||||| |||||||||||||    
T  28253192 gtgttatttgaacaaccatatgagacaacttttgtaacaacttcttttctctctcttttcat 28253131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 561 - 625
Target Start/End: Original strand, 4792591 - 4792655
Alignment:
Q  561 aggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaac 625  Q
    ||||||| |||| ||||||||| | |||||||||||||||||| |||||||||||||||| ||||    
T  4792591 aggataactattgtgagaagagaacttgtatatttcaaaaactaaaaacaaaaactattttaaac 4792655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 538 - 600
Target Start/End: Original strand, 7409823 - 7409885
Alignment:
Q  538 ggactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaa 600  Q
    |||||||||||||||||||||||||||||| |||| ||||||||| | |  ||||||||||||    
T  7409823 ggactaaaactaaaacatgtaaaaggataactattatgagaagagaactattatatttcaaaa 7409885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 584 - 625
Target Start/End: Original strand, 9224870 - 9224911
Alignment:
Q  584 atttgtatatttcaaaaactgaaaacaaaaactatttcaaac 625  Q
    |||||| |||||||||||||||||||||||||||||||||||    
T  9224870 atttgtgtatttcaaaaactgaaaacaaaaactatttcaaac 9224911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 177
Target Start/End: Complemental strand, 34187442 - 34187380
Alignment:
Q  116 agtgttatttgaacaaccatttgagacaatttttataacaacttct-ttttctctcttttcat 177  Q
    |||| ||||||||||||||| ||||||||||| | | ||||||||| ||||||||||||||||    
T  34187442 agtgatatttgaacaaccatgtgagacaatttatgtgacaacttctcttttctctcttttcat 34187380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 177
Target Start/End: Complemental strand, 39010992 - 39010930
Alignment:
Q  116 agtgttatttgaacaaccatttgagacaatttttataacaactt-ctttttctctcttttcat 177  Q
    |||||||||||||||||||| |||||||| |||| | |||||||  |||||||||||||||||    
T  39010992 agtgttatttgaacaaccatatgagacaacttttgtgacaacttattttttctctcttttcat 39010930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 177
Target Start/End: Complemental strand, 40610407 - 40610345
Alignment:
Q  116 agtgttatttgaacaaccatttgagacaatttttataacaacttctttt-tctctcttttcat 177  Q
    |||| |||||||||| ||||||||||||| |||| | |||||||||||| |||||||||||||    
T  40610407 agtgatatttgaacatccatttgagacaacttttgtgacaacttcttttctctctcttttcat 40610345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 177
Target Start/End: Complemental strand, 37516089 - 37516028
Alignment:
Q  116 agtgttatttgaacaaccatttgagacaatttttataacaacttctttttctctcttttcat 177  Q
    |||| |||||||||||||| |||||||||||  | | ||||||| |||||||||||||||||    
T  37516089 agtgatatttgaacaaccacttgagacaattactgtgacaacttttttttctctcttttcat 37516028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 121 - 165
Target Start/End: Original strand, 31817293 - 31817337
Alignment:
Q  121 tatttgaacaaccatttgagacaatttttataacaacttcttttt 165  Q
    |||||||||| |||||||||||||||||| |||||| ||||||||    
T  31817293 tatttgaacatccatttgagacaatttttttaacaatttcttttt 31817337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 171
Target Start/End: Original strand, 52233129 - 52233184
Alignment:
Q  116 agtgttatttgaacaaccatttgagacaatttttataacaacttctttttctctct 171  Q
    |||||||||||||||||||| ||||| ||||||| |   |||||||||||||||||    
T  52233129 agtgttatttgaacaaccatatgagataatttttgtgttaacttctttttctctct 52233184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 116 - 177
Target Start/End: Complemental strand, 1615215 - 1615153
Alignment:
Q  116 agtgttatttgaacaaccatttgagacaatttttataacaacttct-ttttctctcttttcat 177  Q
    |||||||||||||||||||| ||||| || |||| | ||||||| | ||||||||||||||||    
T  1615215 agtgttatttgaacaaccatatgagataacttttgtgacaacttatattttctctcttttcat 1615153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 116 - 174
Target Start/End: Complemental strand, 2362547 - 2362490
Alignment:
Q  116 agtgttatttgaacaaccatttgagacaatttttataacaacttctttttctctctttt 174  Q
    |||| |||||||||||| |||||| ||||||||| | |||||||| |||||||||||||    
T  2362547 agtgatatttgaacaactatttgatacaatttttgtgacaacttc-ttttctctctttt 2362490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 116 - 169
Target Start/End: Original strand, 8934427 - 8934481
Alignment:
Q  116 agtgttatttgaacaaccatttgagacaatttttataacaac-ttctttttctct 169  Q
    |||| |||||||||||||||||| |||||||| ||| ||||| ||||||||||||    
T  8934427 agtgatatttgaacaaccatttgtgacaatttctatgacaactttctttttctct 8934481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 116 - 177
Target Start/End: Original strand, 36690465 - 36690527
Alignment:
Q  116 agtgttatttgaacaaccatttgagacaatttttataacaacttctttt-tctctcttttcat 177  Q
    |||||||||||||||||||| |||||||| |||| | ||||||| |||| ||||| |||||||    
T  36690465 agtgttatttgaacaaccatatgagacaacttttgtgacaacttattttctctctattttcat 36690527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 116 - 177
Target Start/End: Original strand, 36706566 - 36706628
Alignment:
Q  116 agtgttatttgaacaaccatttgagacaatttttataacaacttctttt-tctctcttttcat 177  Q
    |||||||||||||||||||| |||||||| |||| | ||||||| |||| ||||| |||||||    
T  36706566 agtgttatttgaacaaccatatgagacaacttttgtgacaacttattttctctctattttcat 36706628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 116 - 177
Target Start/End: Original strand, 50659085 - 50659147
Alignment:
Q  116 agtgttatttgaacaaccatttgagacaatttttataacaacttctttt-tctctcttttcat 177  Q
    |||||||||||||||||||| ||| |||| || | | |||||||||||| |||||||||||||    
T  50659085 agtgttatttgaacaaccatatgaaacaacttatgtgacaacttcttttctctctcttttcat 50659147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 177
Target Start/End: Complemental strand, 25061906 - 25061849
Alignment:
Q  121 tatttgaacaaccatttgagacaatttttataacaac-ttctttttctctcttttcat 177  Q
    ||||||||||||||||||| ||||| | | | ||||| ||||||||||||||||||||    
T  25061906 tatttgaacaaccatttgatacaatctatttgacaaccttctttttctctcttttcat 25061849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 165
Target Start/End: Original strand, 45740437 - 45740486
Alignment:
Q  116 agtgttatttgaacaaccatttgagacaatttttataacaacttcttttt 165  Q
    |||| ||||||||||| ||||||| | ||||||||| |||||||||||||    
T  45740437 agtgatatttgaacaatcatttgaaataatttttatgacaacttcttttt 45740486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 122 - 177
Target Start/End: Complemental strand, 36418251 - 36418195
Alignment:
Q  122 atttgaacaaccatttgagacaatttttataacaacttctttt-tctctcttttcat 177  Q
    ||||||||||| |||||| |||| |||| | |||||||||||| |||||||||||||    
T  36418251 atttgaacaactatttgatacaacttttgtgacaacttcttttctctctcttttcat 36418195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 115 - 174
Target Start/End: Original strand, 50061868 - 50061928
Alignment:
Q  115 cagtgttatttgaacaaccatttgagacaatttttataacaacttctttt-tctctctttt 174  Q
    ||||| ||||||||||   |||||| |||||| ||||||||||||||||| ||||||||||    
T  50061868 cagtgatatttgaacatttatttgaaacaattcttataacaacttcttttctctctctttt 50061928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 121 - 177
Target Start/End: Complemental strand, 51571599 - 51571544
Alignment:
Q  121 tatttgaacaaccatttgagacaatttttataacaacttctttttctctcttttcat 177  Q
    ||||||||||||||||| | |||| |||| | ||||||||||||| |||||||||||    
T  51571599 tatttgaacaaccatttaatacaacttttgtgacaacttcttttt-tctcttttcat 51571544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0532 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: scaffold0532
Description:

Target: scaffold0532; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 538 - 625
Target Start/End: Complemental strand, 11408 - 11321
Alignment:
Q  538 ggactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaac 625  Q
    |||||||||| ||||||||| ||||||||| || | ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  11408 ggactaaaacaaaaacatgttaaaggataactactctgagaagaggacttgtatatttcaaaaactgaaaacaaaaactatttcaaac 11321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 540 - 625
Target Start/End: Complemental strand, 67959 - 67874
Alignment:
Q  540 actaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaac 625  Q
    |||||||||||||||||||||||||||| |||| | ||||||||| |||||||||| |||||||||||||||||| ||||||||||    
T  67959 actaaaactaaaacatgtaaaaggataactattgttagaagaggacttgtatattttaaaaactgaaaacaaaaattatttcaaac 67874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 538 - 625
Target Start/End: Complemental strand, 21565 - 21478
Alignment:
Q  538 ggactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaac 625  Q
    ||||||||||||||||||||||||  |||| |||| |||||||| ||||| |||||||||||||||||||||||||||| ||||||||    
T  21565 ggactaaaactaaaacatgtaaaataataactattgtgagaagatgatttatatatttcaaaaactgaaaacaaaaactgtttcaaac 21478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1248 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: scaffold1248
Description:

Target: scaffold1248; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 536 - 626
Target Start/End: Complemental strand, 1059 - 969
Alignment:
Q  536 gaggactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaacg 626  Q
    |||||||||||||||||||| |||||| |||| ||||  ||||| | || |||||||||| ||||||||||||||||||||||||||||||    
T  1059 gaggactaaaactaaaacatataaaagaataactattacgagaaaaagacttgtatattttaaaaactgaaaacaaaaactatttcaaacg 969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0952 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: scaffold0952
Description:

Target: scaffold0952; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 536 - 626
Target Start/End: Original strand, 1254 - 1344
Alignment:
Q  536 gaggactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaacg 626  Q
    |||||||||||||||||||| |||||| |||| ||||  ||||| | || |||||||||| ||||||||||||||||||||||||||||||    
T  1254 gaggactaaaactaaaacatataaaagaataactattacgagaaaaagacttgtatattttaaaaactgaaaacaaaaactatttcaaacg 1344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 538 - 624
Target Start/End: Original strand, 37403 - 37489
Alignment:
Q  538 ggactaaaactaaaacatgtaaaaggataattattttgagaagaggatttgtatatttcaaaaactgaaaacaaaaactatttcaaa 624  Q
    ||||||||||||||| |||||||| ||||| ||||  |||||||||| ||||||||||||||||| ||||||||| |||||||||||    
T  37403 ggactaaaactaaaatatgtaaaatgataactattgcgagaagaggacttgtatatttcaaaaaccgaaaacaaacactatttcaaa 37489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 271 - 366
Target Start/End: Original strand, 92085 - 92180
Alignment:
Q  271 aacaaaaaattgaagttgtcacaaactttccttaattccaaaaaactaatgaaaactatttctccttcaaaattaaatctatttacactaatagag 366  Q
    |||||||||  |||| |||||||| ||||| | ||||||||||||||  |||||||||||| ||||| ||||||||||||||||||||| ||||||    
T  92085 aacaaaaaacagaagctgtcacaatctttcatcaattccaaaaaactgttgaaaactatttttcctttaaaattaaatctatttacactgatagag 92180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 116 - 177
Target Start/End: Complemental strand, 18181 - 18120
Alignment:
Q  116 agtgttatttgaacaaccatttgagacaatttttataacaacttctttttctctcttttcat 177  Q
    |||| |||||||||||| |||||| |||| |||||| ||||||| |||||||||||||||||    
T  18181 agtgatatttgaacaactatttgatacaacttttatgacaacttttttttctctcttttcat 18120  T

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Target: scaffold0501 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0501
Description:

Target: scaffold0501; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 115 - 177
Target Start/End: Original strand, 10408 - 10471
Alignment:
Q  115 cagtgttatttgaacaaccatttgagacaatttttataacaacttctttt-tctctcttttcat 177  Q
    ||||||||||||||||||||| |||||||| |||| | ||||||| |||| |||||||||||||    
T  10408 cagtgttatttgaacaaccatatgagacaacttttgtgacaacttattttctctctcttttcat 10471  T

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Target: scaffold0115 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 177
Target Start/End: Original strand, 15082 - 15143
Alignment:
Q  116 agtgttatttgaacaaccatttgagacaatttttataacaacttctttttctctcttttcat 177  Q
    |||| |||||||||||| |||||  |||| |||| | ||||||||||||||||| |||||||    
T  15082 agtgatatttgaacaactatttggtacaacttttgtgacaacttctttttctcttttttcat 15143  T

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