View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15322_low_11 (Length: 518)
Name: NF15322_low_11
Description: NF15322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15322_low_11 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 448; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 11 - 505
Target Start/End: Original strand, 29816542 - 29817037
Alignment:
| Q |
11 |
ttatactcattattatctcaaaatgcaaaatgtttatgttccacttctgcatctagagttactgggaggagctagtagcctcagattattcaacagtaat |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29816542 |
ttatactcattattatctcaaaatgcaaaatgtttatgttccacttctgcatctagagttactgggaggagctagtagcctcagattattcaacagtaat |
29816641 |
T |
|
| Q |
111 |
tagttcctaatcactaatgaatattatcaccatatctactacttctaagtagcctttcttgtttcgtgtgnnnnnnnnnnnngaaaaatgtacatcattt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
29816642 |
tagttcctaatcactaatgaatattatcaccatatctactacttctaagtagcctttcttgtttcgtgtgtatatatatatagaaaaatgtacatcattt |
29816741 |
T |
|
| Q |
211 |
tatcagaaaataaaatctgagaggcaccaaagaaaagtaaaaaggagttcatctcaaatttatctataaatatagatggaatattagaagaacagggttt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29816742 |
tatcagaaaataaaatctgagaggcaccaaagaaaagtaaaaaggagttcatctcaaatttatctataaatatagatggaatattagaagaacagggttt |
29816841 |
T |
|
| Q |
311 |
atgaatttatacatagatcaaaa-aatcttgtacatcaaattcgaattgaaaccacactaagtatcagagattttctttgactgaatctcaccaatataa |
409 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29816842 |
atgaatttatacatagatcaaaaaaatcttgtacatcaaattcgaattgaaaccacactaagtatcagagattttctttgactgaatctcaccaatataa |
29816941 |
T |
|
| Q |
410 |
actgtagtcaccgtagcataacttgaaaatcttcctcaagcccggcttctttaaaacagtggccactcaaacaagtttcgaatattgaagattttg |
505 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29816942 |
actgtagtcaccgtagcataacttgaaaatcttcctcaagcccagcttctttaaaacagtggccactcaaacaagtttcgaatattgaagattttg |
29817037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 193 - 400
Target Start/End: Original strand, 29825033 - 29825243
Alignment:
| Q |
193 |
gaaaaatgtacatcattttatcagaaaataaaatctgagaggcaccaaagaaaagtaaaaaggagttcatctcaaatttatctataaatatagatggaat |
292 |
Q |
| |
|
|||| |||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29825033 |
gaaagatgtacatgattttatcataaaataaaatctgagaggcaccaaagaaaattaaaaaggagttcatctcaaatttatctataaatatagatggaat |
29825132 |
T |
|
| Q |
293 |
attaga--agaacagggtttatgaatttatacataga-tcaaaaaatcttgtacatcaaattcgaattgaaaccacactaagtatcagagattttctttg |
389 |
Q |
| |
|
|||||| | |||||| ||||| |||||||| ||||| ||||| |||||| |||||||| | ||||||||||||||||||||| ||||| ||||||||| |
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|
| T |
29825133 |
attagatgataacaggatttataaatttatagatagattcaaacaatcttatacatcaagtatgaattgaaaccacactaagtaacagaggttttctttg |
29825232 |
T |
|
| Q |
390 |
actgaatctca |
400 |
Q |
| |
|
|||||| |||| |
|
|
| T |
29825233 |
actgaacctca |
29825243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 443 - 505
Target Start/End: Original strand, 29825239 - 29825301
Alignment:
| Q |
443 |
cctcaagcccggcttctttaaaacagtggccactcaaacaagtttcgaatattgaagattttg |
505 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
29825239 |
cctcaagcccagcttctttaaaacaatggccactcaaataagtttcaaatattgaagattttg |
29825301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 281
Target Start/End: Original strand, 37570026 - 37570077
Alignment:
| Q |
230 |
agaggcaccaaagaaaagtaaaaaggagttcatctcaaatttatctataaat |
281 |
Q |
| |
|
|||| ||||||||||| ||| | | ||||||||||||||||||||||||||| |
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|
| T |
37570026 |
agagtcaccaaagaaaggtatacatgagttcatctcaaatttatctataaat |
37570077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 171
Target Start/End: Original strand, 29824982 - 29825019
Alignment:
| Q |
134 |
ttatcaccatatctactacttctaagtagcctttcttg |
171 |
Q |
| |
|
||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
29824982 |
ttatcaccatagctactgcttctaagtagcctttcttg |
29825019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 281
Target Start/End: Complemental strand, 21262274 - 21262223
Alignment:
| Q |
230 |
agaggcaccaaagaaaagtaaaaaggagttcatctcaaatttatctataaat |
281 |
Q |
| |
|
|||| ||||||||||| ||| | | ||||||||||||||||||||||||||| |
|
|
| T |
21262274 |
agagtcaccaaagaaaggtatacatgagttcatctcaaatttatctataaat |
21262223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 281
Target Start/End: Complemental strand, 37503087 - 37503036
Alignment:
| Q |
230 |
agaggcaccaaagaaaagtaaaaaggagttcatctcaaatttatctataaat |
281 |
Q |
| |
|
|||| ||||||||||| ||| | | ||||||||||||||||||||||||||| |
|
|
| T |
37503087 |
agagtcaccaaagaaaggtatacatgagttcatctcaaatttatctataaat |
37503036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 281
Target Start/End: Original strand, 8408249 - 8408300
Alignment:
| Q |
230 |
agaggcaccaaagaaaagtaaaaaggagttcatctcaaatttatctataaat |
281 |
Q |
| |
|
|||| ||||||||||| ||| | | ||||||||||||||||||||||||||| |
|
|
| T |
8408249 |
agagtcaccaaagaaaggtatacatgagttcatctcaaatttatctataaat |
8408300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 281
Target Start/End: Original strand, 32041456 - 32041507
Alignment:
| Q |
230 |
agaggcaccaaagaaaagtaaaaaggagttcatctcaaatttatctataaat |
281 |
Q |
| |
|
|||| ||||||||||| ||| | | ||||||||||||||||||||||||||| |
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|
| T |
32041456 |
agagtcaccaaagaaaggtatacatgagttcatctcaaatttatctataaat |
32041507 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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