View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15322_low_13 (Length: 508)

Name: NF15322_low_13
Description: NF15322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15322_low_13
NF15322_low_13
[»] chr2 (6 HSPs)
chr2 (110-498)||(17366093-17366483)
chr2 (1-52)||(17365992-17366043)
chr2 (408-498)||(25864065-25864155)
chr2 (411-498)||(6565692-6565779)
chr2 (411-498)||(4009627-4009714)
chr2 (411-492)||(12406594-12406675)
[»] chr3 (3 HSPs)
chr3 (112-219)||(42182465-42182572)
chr3 (2-68)||(42182334-42182399)
chr3 (411-465)||(4649716-4649770)
[»] scaffold0078 (1 HSPs)
scaffold0078 (411-498)||(13592-13679)
[»] chr1 (2 HSPs)
chr1 (411-492)||(18424429-18424510)
chr1 (411-451)||(32637964-32638004)
[»] chr8 (2 HSPs)
chr8 (411-488)||(8908451-8908528)
chr8 (411-451)||(15962543-15962583)
[»] chr7 (1 HSPs)
chr7 (417-451)||(24040373-24040407)
[»] chr6 (2 HSPs)
chr6 (421-498)||(16690919-16690996)
chr6 (411-451)||(16663029-16663069)


Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-165; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 110 - 498
Target Start/End: Original strand, 17366093 - 17366483
Alignment:
Q  110 accaatttgtctactagtggagtggtgcgaatgttggaagcatggaggcaaatcaaaggctgagaatggtggcaacccataacacaatcataaatctctc 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  17366093 accaatttgtctactagtggagtggtgcgaatgttggaagcatggaagcaaatcaaaggctgagaatggcggcaacccataacacaatcttaaatctctc 17366192  T
Q  210 cattccaacatttgtcctctttgcacgtgtactccctctggtcctccatataagaaggnnnnnnnnncagcttaacaatacaaactaaattccatgaata 309  Q
    ||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||    
T  17366193 cattccaacatctgtcctctttacacatgtactccctctggtcctccatataagaagaaaaaaaaaacagcttaacaatacaaactaaattccatgaata 17366292  T
Q  310 ctcatgaaca---tagtaattaaaattagacatcttagaatacacccactacctacttctttcaattttccatgttctcgacctcttcaccaacatcaac 406  Q
    |||| |||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  17366293 ctcacgaacaacatagtaattaaaattagacatcttagaatacacccactacctacttctttcaattttccatgttctcgacctcttcaccaacatcgac 17366392  T
Q  407 atattgttaaaatttcttctaatattttgtggactgcaatcaattacactttttggttttaatgaaaacagattgacgttgtgatccctttg 498  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  17366393 atattgtt-aaagttcttctaatattttgtggactgcaatcaattacaccttttggttttaatgaaaacagattgacgttgtgatccatttg 17366483  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 17365992 - 17366043
Alignment:
Q  1 gttttaaccttacatatagaaagtgatagatagataccataaataatgatgt 52  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17365992 gttttaaccttacatatagaaagtgatagatagataccataaataatgatgt 17366043  T

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Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 408 - 498
Target Start/End: Complemental strand, 25864155 - 25864065
Alignment:
Q  408 tattgttaaaatttcttctaatattttgtggactgcaatcaattacactttttggttttaatgaaaacagattgacgttgtgatccctttg 498  Q
    |||||||| ||||| |||||||||||||||||||||||||||||  |  ||||||||||||| | || | ||||| |||||||||| ||||    
T  25864155 tattgttagaattttttctaatattttgtggactgcaatcaattttaggttttggttttaataagaataaattgatgttgtgatccatttg 25864065  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 411 - 498
Target Start/End: Original strand, 6565692 - 6565779
Alignment:
Q  411 tgttaaaatttcttctaatattttgtggactgcaatcaattacactttttggttttaatgaaaacagattgacgttgtgatccctttg 498  Q
    ||||| |||||||||||||||||||||| ||||||||||||     ||||||||||||| ||||| || ||| |||||||||| ||||    
T  6565692 tgttagaatttcttctaatattttgtgggctgcaatcaattgttgattttggttttaataaaaacggactgatgttgtgatccatttg 6565779  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 411 - 498
Target Start/End: Original strand, 4009627 - 4009714
Alignment:
Q  411 tgttaaaatttcttctaatattttgtggactgcaatcaattacactttttggttttaatgaaaacagattgacgttgtgatccctttg 498  Q
    ||||| |||||||||||||||||||||| || |||||||||     ||||||||||||| ||||| || ||| |||||||||| ||||    
T  4009627 tgttagaatttcttctaatattttgtgggctacaatcaattgttggttttggttttaataaaaacggactgatgttgtgatccatttg 4009714  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 411 - 492
Target Start/End: Original strand, 12406594 - 12406675
Alignment:
Q  411 tgttaaaatttcttctaatattttgtggactgcaatcaattacactttttggttttaatgaaaacagattgacgttgtgatc 492  Q
    ||||| |||||||||||| ||||||||| || |||||||||     ||||||||||||| |||||||| ||| |||||||||    
T  12406594 tgttagaatttcttctaacattttgtgggctacaatcaattgttggttttggttttaataaaaacagactgatgttgtgatc 12406675  T

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Target: chr3 (Bit Score: 88; Significance: 4e-42; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 112 - 219
Target Start/End: Original strand, 42182465 - 42182572
Alignment:
Q  112 caatttgtctactagtggagtggtgcgaatgttggaagcatggaggcaaatcaaaggctgagaatggtggcaacccataacacaatcataaatctctcca 211  Q
    |||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  42182465 caatttgtctgctagtggattggtgcgaatgttggaagcatggaagcaaatcaaaggccgagaatggcggcaacccataacacaatcataaatctctcca 42182564  T
Q  212 ttccaaca 219  Q
    ||||||||    
T  42182565 ttccaaca 42182572  T

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Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 2 - 68
Target Start/End: Original strand, 42182334 - 42182399
Alignment:
Q  2 ttttaaccttacatatagaaagtgatagatagataccataaataatgatgtcaaatgaaaaaatgga 68  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||    
T  42182334 ttttaaccttacatatagaaagtgatagatagataccat-aataatgatgttagatgaaaaaatgga 42182399  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 411 - 465
Target Start/End: Complemental strand, 4649770 - 4649716
Alignment:
Q  411 tgttaaaatttcttctaatattttgtggactgcaatcaattacactttttggttt 465  Q
    ||||| ||||||||||||||||||||||  ||||||||||||  | |||||||||    
T  4649770 tgttagaatttcttctaatattttgtgggttgcaatcaattattcgttttggttt 4649716  T

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Target: scaffold0078 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 411 - 498
Target Start/End: Original strand, 13592 - 13679
Alignment:
Q  411 tgttaaaatttcttctaatattttgtggactgcaatcaattacactttttggttttaatgaaaacagattgacgttgtgatccctttg 498  Q
    ||||| ||||||||||||||||||||||  |||||||||||     ||||||||||||||||||| || ||| |||||||||| ||||    
T  13592 tgttagaatttcttctaatattttgtgggatgcaatcaattgttggttttggttttaatgaaaacggactgatgttgtgatccatttg 13679  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 411 - 492
Target Start/End: Complemental strand, 18424510 - 18424429
Alignment:
Q  411 tgttaaaatttcttctaatattttgtggactgcaatcaattacactttttggttttaatgaaaacagattgacgttgtgatc 492  Q
    ||||| |||||||||||||||||||||| ||||||||||||     ||||||||||||| ||||| || ||| |||||||||    
T  18424510 tgttagaatttcttctaatattttgtgggctgcaatcaattgttggttttggttttaataaaaacggactgatgttgtgatc 18424429  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 411 - 451
Target Start/End: Original strand, 32637964 - 32638004
Alignment:
Q  411 tgttaaaatttcttctaatattttgtggactgcaatcaatt 451  Q
    ||||| |||||||||||||||||||||| ||||||||||||    
T  32637964 tgttagaatttcttctaatattttgtgggctgcaatcaatt 32638004  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 411 - 488
Target Start/End: Original strand, 8908451 - 8908528
Alignment:
Q  411 tgttaaaatttcttctaatattttgtggactgcaatcaattacactttttggttttaatgaaaacagattgacgttgt 488  Q
    ||||| |||||||||||||||||||||| || |||||||||     ||||||||||||| ||||| |||||| |||||    
T  8908451 tgttagaatttcttctaatattttgtgggctacaatcaattgttggttttggttttaataaaaacggattgatgttgt 8908528  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 411 - 451
Target Start/End: Complemental strand, 15962583 - 15962543
Alignment:
Q  411 tgttaaaatttcttctaatattttgtggactgcaatcaatt 451  Q
    ||||| |||||||||||||||||||||  ||||||||||||    
T  15962583 tgttagaatttcttctaatattttgtgtgctgcaatcaatt 15962543  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 417 - 451
Target Start/End: Complemental strand, 24040407 - 24040373
Alignment:
Q  417 aatttcttctaatattttgtggactgcaatcaatt 451  Q
    |||||||||||||||||||||| ||||||||||||    
T  24040407 aatttcttctaatattttgtgggctgcaatcaatt 24040373  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 421 - 498
Target Start/End: Original strand, 16690919 - 16690996
Alignment:
Q  421 tcttctaatattttgtggactgcaatcaattacactttttggttttaatgaaaacagattgacgttgtgatccctttg 498  Q
    |||||||||||||||||| || |||||||||     ||||||||||||| ||||| || ||| |||||||||| ||||    
T  16690919 tcttctaatattttgtgggctacaatcaattgttggttttggttttaataaaaacggactgatgttgtgatccatttg 16690996  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 411 - 451
Target Start/End: Original strand, 16663029 - 16663069
Alignment:
Q  411 tgttaaaatttcttctaatattttgtggactgcaatcaatt 451  Q
    ||||| |||||||||||||||||||||| || |||||||||    
T  16663029 tgttagaatttcttctaatattttgtgggctacaatcaatt 16663069  T

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