View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15322_low_14 (Length: 501)
Name: NF15322_low_14
Description: NF15322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15322_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 438; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 6 - 483
Target Start/End: Complemental strand, 21706478 - 21706002
Alignment:
| Q |
6 |
atggacatcatctctggtagacttctagattcctccatggagaatagagatttcagattttcacaacggataacttttaaatgcttgagacattggagac |
105 |
Q |
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| T |
21706478 |
atggacatcaactctggtagacttctagattcctccatggagaatagagatttcagattttcacaacgtaaaacttgtaaatgcttgagacattggagac |
21706379 |
T |
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| Q |
106 |
tctgagtctttcttggagttgtaggacccaaccatgatatggagttcaactgaggcaaatcatataaatccaagtacagttttaggggcaagttctgaaa |
205 |
Q |
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| T |
21706378 |
tctgagtctgtcttggagttgtaggacccaaccatgatatggagttcaactgaggcaaatcatataattccaagtccagttttaggggcaagttctgaaa |
21706279 |
T |
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| Q |
206 |
atgaaaaaggttgatgaaattataaagcatatttgggaaattaaataaattatgcttctgcaaaatagaacatacttcattttgactatgatcagagcgt |
305 |
Q |
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| T |
21706278 |
atgaaaaaggttgatgaaattataaagcatatttgggaaattaaataaattatgcttctgcaaaatagaacatacttcattttgactatgatcagagcgt |
21706179 |
T |
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| Q |
306 |
atcatcacaaagatccatgacaaagccaatttgggacaatccttcacaacaagagcctttaaagagtgagatggccactttgcaagacagtattcgggac |
405 |
Q |
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| T |
21706178 |
atcatcacaaagatccatgacaaagccaatttgggacaatcgttcacaacaagagcctttaaagagtgagatggccactttgcaagacagtattcgggac |
21706079 |
T |
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| Q |
406 |
atatcccaataaaattgtgaaggaattcgagattgagtactttcagttgaggaagcatgatgtggttgtggtatttgt |
483 |
Q |
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| T |
21706078 |
atatcccaat-aaattgtgaaggaattcgagattgagtactttcagttgaggaagcatgatgtggttgtggtatttgt |
21706002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 6 - 211
Target Start/End: Original strand, 21712986 - 21713191
Alignment:
| Q |
6 |
atggacatcatctctggtagacttctagattcctccatggagaatagagatttcagattttcacaacggataacttttaaatgcttgagacattggagac |
105 |
Q |
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|||||||||| ||||||||||||||||||||||| ||||||||| | |||||||| |||||||||| |||||||||| || |||||||||||||| |
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| T |
21712986 |
atggacatcaactctggtagacttctagattccttcatggagaacaaagatttcaaattttcacaatcacctacttttaaatactggagacattggagac |
21713085 |
T |
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| Q |
106 |
tctgagtctttcttggagttgtaggacccaaccatgatatggagttcaactgaggcaaatcatataaatccaagtacagttttaggggcaagttctgaaa |
205 |
Q |
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| T |
21713086 |
tccatatctgtcttggagctgtaggatcctgccatgatatggatttcaactgaggcaaaacatgtaaatacaactccagttttaagggcaagttctgaac |
21713185 |
T |
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| Q |
206 |
atgaaa |
211 |
Q |
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|||||| |
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| T |
21713186 |
atgaaa |
21713191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 8 - 160
Target Start/End: Complemental strand, 21709388 - 21709236
Alignment:
| Q |
8 |
ggacatcatctctggtagacttctagattcctccatggagaatagagatttcagattttcacaacggataacttttaaatgcttgagacattggagactc |
107 |
Q |
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|||||||| || | |||||||||||||||||| || |||||||||||||||||||||||||||| ||| ||| || ||| |||||||||||||||| |
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| T |
21709388 |
ggacatcaactttagtagacttctagattccttcacggagaatagagatttcagattttcacaatcaccaacatttcaacgctggagacattggagactc |
21709289 |
T |
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| Q |
108 |
tgagtctttcttggagttgtaggacccaaccatgatatggagttcaactgagg |
160 |
Q |
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| T |
21709288 |
cgaatttgtcttggagttataagacccaaccatgatatggcgttcaattgagg |
21709236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 288 - 472
Target Start/End: Original strand, 21713334 - 21713518
Alignment:
| Q |
288 |
tgactatgatcagagcgtatcatcacaaagatccatgacaaagccaatttgggacaatccttcacaacaagagcctttaaagagtgagatggccactttg |
387 |
Q |
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||||||||| |||| || ||||| | | |||||| |||| | |||||||||||||||||| |||||||||| || | |||||||||||||||||||| | |
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| T |
21713334 |
tgactatgaccagaacgaatcataagagcgatccacgacatatccaatttgggacaatcctccacaacaagatccctcaaagagtgagatggccacttcg |
21713433 |
T |
|
| Q |
388 |
caagacagtattcgggacatatcccaataaaattgtgaag-gaattcgagattgagtactttcagttgaggaagcatgatgtggtt |
472 |
Q |
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| T |
21713434 |
catgacagtattcaggacacatcccaatgagattgtcaagagaact-gagtttgagaacttccagttgagaaagcatggtgtggtt |
21713518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 287 - 343
Target Start/End: Complemental strand, 21709144 - 21709088
Alignment:
| Q |
287 |
ttgactatgatcagagcgtatcatcacaaagatccatgacaaagccaatttgggaca |
343 |
Q |
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|||||||||||||||||||||||||||| ||||||| ||| |||||| || ||||| |
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| T |
21709144 |
ttgactatgatcagagcgtatcatcacagcgatccataacatagccaactttggaca |
21709088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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