View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15322_low_15 (Length: 473)
Name: NF15322_low_15
Description: NF15322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15322_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 151 - 463
Target Start/End: Complemental strand, 33119795 - 33119483
Alignment:
| Q |
151 |
cgagttcgttaggagatcactatacagaagagtgatggtattaattattatccataccactcactcaaactgtcactgacacggcatggggataaaattg |
250 |
Q |
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| T |
33119795 |
cgagttcgttaggagatcactatacagaagagtgacggtattaattattatccataccactcactcaaactgtcactgacacggcatggggataaaattg |
33119696 |
T |
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| Q |
251 |
gggtccttttaacttccttttccatttcaaaaggaaagaaaagcactacaagagtaccttcaaatgctacaacctgtgaattttctcaatttcattctca |
350 |
Q |
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| T |
33119695 |
gggtccttttaacttccttttccatttgaaaaggaaagaaaagcactacaagagtaccttcaaatgctacaacctgtgaattttctcaatttcattctca |
33119596 |
T |
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| Q |
351 |
ctggtcctattacaattgccacacaaacttaactccaagtttcaatctcacttttatttctctttcagtacaataattaacacacactactcagtgtttg |
450 |
Q |
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| T |
33119595 |
ctggtcctattacaattgccacacaaacttaactccaagtttcaatctcacttttatttctctttcagtacaataattaacacacactactcagtgtttg |
33119496 |
T |
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| Q |
451 |
gctcacatctctg |
463 |
Q |
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||||||||||||| |
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| T |
33119495 |
gctcacatctctg |
33119483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 33119950 - 33119828
Alignment:
| Q |
1 |
tccccttcattcacacaccacactatctatccaatttttacatctcactctttgccgctcgataaagaccatgataaataatcactcgagatcaataaca |
100 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33119950 |
tccccttcattcacac--cacactatctatccaatttttacatctcactctttgccgctcgataaagaccatgataaataatcactcgagatcaataaca |
33119853 |
T |
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| Q |
101 |
aacttttatatctaataactgtaat |
125 |
Q |
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||||||||||||||||||||||||| |
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| T |
33119852 |
aacttttatatctaataactgtaat |
33119828 |
T |
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