View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15322_low_17 (Length: 463)

Name: NF15322_low_17
Description: NF15322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15322_low_17
NF15322_low_17
[»] chr5 (8 HSPs)
chr5 (1-454)||(1058596-1059049)
chr5 (2-454)||(1071415-1071867)
chr5 (9-454)||(1065688-1066133)
chr5 (1-454)||(1033686-1034139)
chr5 (1-454)||(1044073-1044526)
chr5 (1-454)||(1053331-1053784)
chr5 (13-449)||(1640429-1640865)
chr5 (1-454)||(1046656-1047112)
[»] chr3 (3 HSPs)
chr3 (353-454)||(44171260-44171361)
chr3 (353-454)||(44191556-44191657)
chr3 (40-101)||(12121338-12121399)
[»] scaffold0001 (1 HSPs)
scaffold0001 (40-123)||(65854-65937)


Alignment Details
Target: chr5 (Bit Score: 450; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 1 - 454
Target Start/End: Complemental strand, 1059049 - 1058596
Alignment:
Q  1 gaatgtcgccctgttatacttgtttagaggagcatcaagtgcaaatctcttcggcaaatctggattagctaagaacaaacgaccatatacaacaaggtct 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1059049 gaatgtcgccctgttatacttgtttagaggagcattaagtgcaaatctcttcggcaaatctggattagctaagaacaaacgaccatatacaacaaggtct 1058950  T
Q  101 gtcctattttcagctatggcattgatcccatcatttcggtcgtaacctcctgcagccaggaaagtgcctttgaaggcctttctcatcggcacaaggctgt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1058949 gtcctattttcagctatggcattgatcccatcatttcggtcgtaacctcctgcagccaggaaagtgcctttgaaggcctttctcatcggcacaaggctgt 1058850  T
Q  201 gagagcattcaattctttcattaacagttttcattcttggttccaccacatgacagtaaagaataccatatttattgagggcattagccatataaagtcc 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1058849 gagagcattcaattctttcattaacagttttcattcttggttccaccacatgacagtaaagaataccatatttattgagggcattagccatataaagtcc 1058750  T
Q  301 caattctctgggattagagtctacacattctgcatattctgaaaaaggtgataatctaattccagttctatctgcacctatctcatttgcaacagcttca 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1058749 caattctctgggattagagtctacacattctgcatattctgaaaaaggtgataatctaattccagttctatctgcacctatctcatttgcaacagcttca 1058650  T
Q  401 acaacttccaaaacaatccgacaacggttctcaagggatccaccatattcatct 454  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1058649 acaacttccaaaacaatccgacaacggttctcaagggatccaccatattcatct 1058596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 2 - 454
Target Start/End: Complemental strand, 1071867 - 1071415
Alignment:
Q  2 aatgtcgccctgttatacttgtttagaggagcatcaagtgcaaatctcttcggcaaatctggattagctaagaacaaacgaccatatacaacaaggtctg 101  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  1071867 aatgtctccctgttatacttgtttagaggagcatcaagtgcaaatctctttggcaaatctggattagctaagaacaaacgaccatatacaactaggtctg 1071768  T
Q  102 tcctattttcagctatggcattgatcccatcatttcggtcgtaacctcctgcagccaggaaagtgcctttgaaggcctttctcatcggcacaaggctgtg 201  Q
     ||| |||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||     
T  1071767 ccctgttttcagctatggcattgatcccatcatgtcggtcgtaacctcctgcaaccatgaaagtgcctttgaaggcctttctcattggcacaaggctgtc 1071668  T
Q  202 agagcattcaattctttcattaacagttttcattcttggttccaccacatgacagtaaagaataccatatttattgagggcattagccatataaagtccc 301  Q
     | ||||||| || |||||  ||||||| ||||||||||||||||||  ||||| ||||||||||| |||||||||||||||||| ||||||||||||||    
T  1071667 ggggcattcagttttttcaccaacagttatcattcttggttccaccatgtgacaataaagaataccgtatttattgagggcattaaccatataaagtccc 1071568  T
Q  302 aattctctgggattagagtctacacattctgcatattctgaaaaaggtgataatctaattccagttctatctgcacctatctcatttgcaacagcttcaa 401  Q
    |||||| | || || |||||| ||||||||| ||| |||| ||||||||||||||| ||||||  ||| ||||  |||||||||||||||||||||||||    
T  1071567 aattctttagggttggagtctccacattctgaatactctgcaaaaggtgataatcttattccaactctttctgttcctatctcatttgcaacagcttcaa 1071468  T
Q  402 caacttccaaaacaatccgacaacggttctcaagggatccaccatattcatct 454  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||| ||||||    
T  1071467 caacttccaaagcaaaccgacaacggttctcaagggatccaccatactcatct 1071415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 9 - 454
Target Start/End: Complemental strand, 1066133 - 1065688
Alignment:
Q  9 ccctgttatacttgtttagaggagcatcaagtgcaaatctcttcggcaaatctggattagctaagaacaaacgaccatatacaacaaggtctgtcctatt 108  Q
    |||||||||| ||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||| ||    
T  1066133 ccctgttatatttgttcagaggagcatcaagtgcaaatctctttggtaaatctggattagctaagaacaaacgaccatatacaacaaggtctgccctgtt 1066034  T
Q  109 ttcagctatggcattgatcccatcatttcggtcgtaacctcctgcagccaggaaagtgcctttgaaggcctttctcatcggcacaaggctgtgagagcat 208  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||  | ||||    
T  1066033 ttcagctatggcattgatcccatcatgtcggtcgtaacctcctgcaaccatgaaagtgcctttgaaggcctttctcattggcacaaggctgtcggggcat 1065934  T
Q  209 tcaattctttcattaacagttttcattcttggttccaccacatgacagtaaagaataccatatttattgagggcattagccatataaagtcccaattctc 308  Q
    ||| || |||||  |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||      
T  1065933 tcagttttttcaccaacagttttcattcttggttccaccatatgacagtaaagaataccatatttattgagggcattgaccatataaagtcccaattcat 1065834  T
Q  309 tgggattagagtctacacattctgcatattctgaaaaaggtgataatctaattccagttctatctgcacctatctcatttgcaacagcttcaacaacttc 408  Q
    |||| || |||||| ||||||||||||| || | ||||||||||||||| ||||||  ||| ||||| ||||||||||||||||||||||||||||||||    
T  1065833 tggggttggagtctccacattctgcatactccgcaaaaggtgataatcttattccaactctttctgctcctatctcatttgcaacagcttcaacaacttc 1065734  T
Q  409 caaaacaatccgacaacggttctcaagggatccaccatattcatct 454  Q
    |||| |||  ||||| |||||||| || || |||||||||||||||    
T  1065733 caaagcaaatcgacagcggttctccagagacccaccatattcatct 1065688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 454
Target Start/End: Complemental strand, 1034139 - 1033686
Alignment:
Q  1 gaatgtcgccctgttatacttgtttagaggagcatcaagtgcaaatctcttcggcaaatctggattagctaagaacaaacgaccatatacaacaaggtct 100  Q
    ||||||| |||||||||| || || |||||||| |  ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||    
T  1034139 gaatgtctccctgttatatttattgagaggagcgtttagtgcaaatctcttcggcaaatctggattcgctaagaacaaacgaccataaacaacaagatct 1034040  T
Q  101 gtcctattttcagctatggcattgatcccatcatttcggtcgtaacctcctgcagccaggaaagtgcctttgaaggcctttctcatcggcacaaggctgt 200  Q
    | |||||| || ||||| |||||||||||||| | || ||| |||||||| ||| ||| |||||| || ||||| ||||||||||| ||||| || ||||    
T  1034039 gccctattatctgctatagcattgatcccatcttgtctgtcataacctcccgcaaccatgaaagtaccattgaaagcctttctcatgggcaccagactgt 1033940  T
Q  201 gagagcattcaattctttcattaacagttttcattcttggttccaccacatgacagtaaagaataccatatttattgagggcattagccatataaagtcc 300  Q
     || || ||||||  |||||| |   | ||| ||||||||||||||||  |||||||||||||||   || ||||||||||||||| |||||||||||||    
T  1033939 aagggctttcaatcgtttcatcatttgattttattcttggttccaccatgtgacagtaaagaatattgtacttattgagggcattaaccatataaagtcc 1033840  T
Q  301 caattctctgggattagagtctacacattctgcatattctgaaaaaggtgataatctaattccagttctatctgcacctatctcatttgcaacagcttca 400  Q
    ||||||| ||||||| ||||||  | |||||| || ||| | ||||||||||||||||||||||  ||| ||||| |||||||||||  ||||||| |||    
T  1033839 caattctgtgggattggagtctctagattctgaatgttccgcaaaaggtgataatctaattccaactctttctgctcctatctcattcacaacagcgtca 1033740  T
Q  401 acaacttccaaaacaatccgacaacggttctcaagggatccaccatattcatct 454  Q
    |||||||||||  |||  |||||||| |||||||||||||||||||||||||||    
T  1033739 acaacttccaatgcaaatcgacaacgattctcaagggatccaccatattcatct 1033686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 1 - 454
Target Start/End: Complemental strand, 1044526 - 1044073
Alignment:
Q  1 gaatgtcgccctgttatacttgtttagaggagcatcaagtgcaaatctcttcggcaaatctggattagctaagaacaaacgaccatatacaacaaggtct 100  Q
    ||||||| |||| ||||||||||| |||||||||| ||||||||||||||| |||||||||||||| |||||||||||||||||||| || ||||| |||    
T  1044526 gaatgtctccctattatacttgttgagaggagcattaagtgcaaatctctttggcaaatctggatttgctaagaacaaacgaccataaactacaagatct 1044427  T
Q  101 gtcctattttcagctatggcattgatcccatcatttcggtcgtaacctcctgcagccaggaaagtgcctttgaaggcctttctcatcggcacaaggctgt 200  Q
    | | | ||||||||||| |||| |||||| || | || ||| || ||||||||||||| ||||| ||| ||||| ||||||||||| ||||| || ||||    
T  1044426 gccttgttttcagctatagcatcgatcccgtcttgtctgtcatagcctcctgcagccatgaaagagccattgaaagcctttctcattggcaccagactgt 1044327  T
Q  201 gagagcattcaattctttcattaacagttttcattcttggttccaccacatgacagtaaagaataccatatttattgagggcattagccatataaagtcc 300  Q
     || || ||||||  |||||  | | | ||| ||||||||||||||||  |||||||||||||||   || ||||||||||||||| |||||| ||||||    
T  1044326 aagggctttcaatcgtttcagaagctgattttattcttggttccaccatgtgacagtaaagaatattgtacttattgagggcattaaccatatgaagtcc 1044227  T
Q  301 caattctctgggattagagtctacacattctgcatattctgaaaaaggtgataatctaattccagttctatctgcacctatctcatttgcaacagcttca 400  Q
    ||||||  ||||||| |||||| | | |||||||||||||| ||||||||||| ||||||||||  | ||||||| |||||||||||  |||| ||||||    
T  1044226 caattcattgggattggagtctccgctttctgcatattctgcaaaaggtgatagtctaattccaactttatctgctcctatctcattcacaactgcttca 1044127  T
Q  401 acaacttccaaaacaatccgacaacggttctcaagggatccaccatattcatct 454  Q
    ||||||||||||  ||  |||||||| ||||| ||||||||||| |||||||||    
T  1044126 acaacttccaaaggaaatcgacaacgattctcgagggatccaccgtattcatct 1044073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 1 - 454
Target Start/End: Complemental strand, 1053784 - 1053331
Alignment:
Q  1 gaatgtcgccctgttatacttgtttagaggagcatcaagtgcaaatctcttcggcaaatctggattagctaagaacaaacgaccatatacaacaaggtct 100  Q
    ||||||| |||| ||||||||||| |||||||||| ||||||||||||||| || ||||||||||||| || |||||||||||||||  ||| ||| |||    
T  1053784 gaatgtctccctattatacttgttaagaggagcattaagtgcaaatctctttggtaaatctggattagatatgaacaaacgaccataagcaataagatct 1053685  T
Q  101 gtcctattttcagctatggcattgatcccatcatttcggtcgtaacctcctgcagccaggaaagtgcctttgaaggcctttctcatcggcacaaggctgt 200  Q
    | ||||||||||||||| |||||||| ||||| | ||  || || ||||| | | |||  ||||| || |||||  ||||||| || | ||| | ||| |    
T  1053684 gccctattttcagctatagcattgattccatcttgtctttcatagcctccagtaaccataaaagttccattgaaaacctttcttattgacaccaagctat 1053585  T
Q  201 gagagcattcaattctttcattaacagttttcattcttggttccaccacatgacagtaaagaataccatatttattgagggcattagccatataaagtcc 300  Q
     |   |||||| || | |||| || | ||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||  |||||||||||||    
T  1053584 aatgacattcagttttctcatcaagaatttccattcttggttccaccatatgacaataaagaataccatatttattgagggcattcaccatataaagtcc 1053485  T
Q  301 caattctctgggattagagtctacacattctgcatattctgaaaaaggtgataatctaattccagttctatctgcacctatctcatttgcaacagcttca 400  Q
    |||||||  |||||| |||||| |||| ||| || ||| |  ||||||||||||| | ||||||  ||| ||||||||||||||||||||||||||||||    
T  1053484 caattcttggggatttgagtctccacaatctccaaatttttcaaaaggtgataattttattccaactctttctgcacctatctcatttgcaacagcttca 1053385  T
Q  401 acaacttccaaaacaatccgacaacggttctcaagggatccaccatattcatct 454  Q
    |||| |||||||||||  | |||||| || ||||||| ||||||||||||||||    
T  1053384 acaatttccaaaacaaatctacaacgattttcaagggttccaccatattcatct 1053331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 13 - 449
Target Start/End: Original strand, 1640429 - 1640865
Alignment:
Q  13 gttatacttgtttagaggagcatcaagtgcaaatctcttcggcaaatctggattagctaagaacaaacgaccatatacaacaaggtctgtcctattttca 112  Q
    |||||||||||| ||||||||||| || || |||||||| || ||||||||||||| ||  ||||| ||||||||  ||||||| |||||| ||||||||    
T  1640429 gttatacttgttgagaggagcatcgagcgcgaatctctttggtaaatctggattagatataaacaagcgaccataagcaacaagatctgtcttattttca 1640528  T
Q  113 gctatggcattgatcccatcatttcggtcgtaacctcctgcagccaggaaagtgcctttgaaggcctttctcatcggcacaaggctgtgagagcattcaa 212  Q
     |||||||||  |||||||| | |||    || ||||| ||| | |  ||||| || |||||||| |||||||| ||||| | |||||||   |||||||    
T  1640529 actatggcatcaatcccatcttgtcgcgaatagcctccggcaactataaaagttccattgaaggcttttctcattggcaccaagctgtgaagacattcaa 1640628  T
Q  213 ttctttcattaacagttttcattcttggttccaccacatgacagtaaagaataccatatttattgagggcattagccatataaagtcccaattctctggg 312  Q
     | ||||| ||| |||||||||||||||||||||||  |||||||||||||||   |||||| ||||||||||| |||||||||| |||||||||   ||    
T  1640629 ctttttcagtaatagttttcattcttggttccaccatgtgacagtaaagaatattgtatttactgagggcattaaccatataaagccccaattcttcagg 1640728  T
Q  313 attagagtctacacattctgcatattctgaaaaaggtgataatctaattccagttctatctgcacctatctcatttgcaacagcttcaacaacttccaaa 412  Q
    ||| |||||| |||||||| |||||||||  ||||| |||||||||||||||  ||| |||||||||||||||||  |||| |||||||||| |||||||    
T  1640729 attggagtctccacattctccatattctgcgaaaggcgataatctaattccaactctttctgcacctatctcattcacaactgcttcaacaatttccaaa 1640828  T
Q  413 acaatccgacaacggttctcaagggatccaccatatt 449  Q
     | |  ||||||||||| ||||||| |||||| ||||    
T  1640829 gcgaatcgacaacggttttcaagggttccaccgtatt 1640865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 1 - 454
Target Start/End: Complemental strand, 1047112 - 1046656
Alignment:
Q  1 gaatgtcgccctgttatacttgtttagaggagcatcaagtgcaaatctcttcggcaaatctggattagctaagaacaaacgaccatatacaacaaggtct 100  Q
    ||||||| || | |||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||| ||| |||||  | ||  ||||||| |||    
T  1047112 gaatgtctccatattatacttgtttaggggagcattaagtgcaaatctctttggcaaatctggattagctatgaataaacggtcgtaagcaacaagatct 1047013  T
Q  101 gtcctattttcagctatggcattgatcccatcatttcggtcgtaacctcctgcagccaggaaagtgcctttgaaggcctttctcatcggcacaaggctgt 200  Q
      ||||||||||||||| ||||||||||| ||   ||  || || | ||| | | ||| ||||||||| ||||| ||||||||||  ||||| | | |||    
T  1047012 accctattttcagctatagcattgatcccgtctagtctttcatagcttccggtaaccatgaaagtgccattgaaagcctttctcactggcaccaagttgt 1046913  T
Q  201 gagagcattcaattctttcattaacagttt---tcattcttggttccaccacatgacagtaaagaataccatatttattgagggcattagccatataaag 297  Q
    ||   ||||   || | |||| || |||||   |  || ||  ||| |||| |||||| || ||||||||||||||||||||||||||| |||| |||||    
T  1046912 gaagacattttgttttatcatcaatagtttcattacttattcattctaccatatgacaatacagaataccatatttattgagggcattaaccatgtaaag 1046813  T
Q  298 tcccaattctctgggattagagtctacacattctgcatattctgaaaaaggtgataatctaattccagttctatctgcacctatctcatttgcaacagct 397  Q
     |||||| |  | ||||| |||||| |||||||| |  | |||||||||||||||| | | ||||||  ||| || ||||| ||||||||| ||||||||    
T  1046812 ccccaatgccttcggatttgagtctccacattcttcgaaatctgaaaaaggtgatagttttattccaactctttcggcaccaatctcatttacaacagct 1046713  T
Q  398 tcaacaacttccaaaacaatccgacaacggttctcaagggatccaccatattcatct 454  Q
    ||||||| |||||||||||    ||||||||| ||||| | ||||||||||||||||    
T  1046712 tcaacaatttccaaaacaaatttacaacggttttcaagagttccaccatattcatct 1046656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 353 - 454
Target Start/End: Original strand, 44171260 - 44171361
Alignment:
Q  353 aatctaattccagttctatctgcacctatctcatttgcaacagcttcaacaacttccaaaacaatccgacaacggttctcaagggatccaccatattcat 452  Q
    ||||||||||||  | | ||||| |||||||||||  ||||||||||||||||||||||  ||| || ||| |||||||| |||||||||||||||||||    
T  44171260 aatctaattccaactttttctgctcctatctcattcacaacagcttcaacaacttccaatccaaaccaacatcggttctctagggatccaccatattcat 44171359  T
Q  453 ct 454  Q
    ||    
T  44171360 ct 44171361  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 353 - 454
Target Start/End: Original strand, 44191556 - 44191657
Alignment:
Q  353 aatctaattccagttctatctgcacctatctcatttgcaacagcttcaacaacttccaaaacaatccgacaacggttctcaagggatccaccatattcat 452  Q
    ||||||||||||  | | ||||| |||||||||||  ||||||||||||||||||||||  ||| || ||| |||||||| |||||||||||||||||||    
T  44191556 aatctaattccaactttttctgctcctatctcattcacaacagcttcaacaacttccaatccaaaccaacatcggttctctagggatccaccatattcat 44191655  T
Q  453 ct 454  Q
    ||    
T  44191656 ct 44191657  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 40 - 101
Target Start/End: Original strand, 12121338 - 12121399
Alignment:
Q  40 tgcaaatctcttcggcaaatctggattagctaagaacaaacgaccatatacaacaaggtctg 101  Q
    |||||||||| | ||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  12121338 tgcaaatctcattggcaaatctggattagctaagaacaaacgaccataaacaacaagatctg 12121399  T

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Target: scaffold0001 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 40 - 123
Target Start/End: Complemental strand, 65937 - 65854
Alignment:
Q  40 tgcaaatctcttcggcaaatctggattagctaagaacaaacgaccatatacaacaaggtctgtcctattttcagctatggcatt 123  Q
    |||||||||||| ||||||| |||||||||||||||| |||||||||| |||||||| |||| | ||||||| ||||| |||||    
T  65937 tgcaaatctctttggcaaatttggattagctaagaacgaacgaccataaacaacaagatctgccttattttctgctatagcatt 65854  T

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