View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15322_low_18 (Length: 459)
Name: NF15322_low_18
Description: NF15322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15322_low_18 |
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Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 14 - 442
Target Start/End: Original strand, 40125665 - 40126093
Alignment:
| Q |
14 |
cataggtaaatgatttttgtgatcctaaattggctatatggccacacattgtagaaatgcaggnnnnnnnnnnnnnnnnnngaaatgcaggtttttactt |
113 |
Q |
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| T |
40125665 |
cataggtaaatgatttttgtgatcctaaattggctatatggccacacattgtagaaatgcaggttttttaattttctttttgaaatgcaggtttttactt |
40125764 |
T |
|
| Q |
114 |
aacaacctctcttcatatttcatgtgattattgttttcagttttatgcatccccttcaacaaattaaagaattaactctcaaatcatagagggaagtcac |
213 |
Q |
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| T |
40125765 |
aacaacctctcttcatatttcatgtgattattgttttcagttttatgcatccccttcaacaaattaaagaattaactctcagatcatagagggaagtcac |
40125864 |
T |
|
| Q |
214 |
ccttcacatatgctgtacaactaagattttcaattcaaacatttctccaagtttaaatacaacgctagtaatttgagtatctgattaagatctaattggc |
313 |
Q |
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| T |
40125865 |
ccttcccatatgctgtacaactaagatttgcaattcaaacatttctcgaagtttaaatacaacgctagtaatttgagtatctgattaagatctaattggc |
40125964 |
T |
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| Q |
314 |
ctgaaattgttgatgagacgctcgaggtgagaccgaatcatgcttccaaaagaaaatgttggtataacatctctactattgttactggatgatgaggatt |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40125965 |
ctgaaattgttgatgagacgctcgaggtgagaccgaatcatgcctccaaaagaaaatgttggtataacatctctactattgttactggatgatgaggatt |
40126064 |
T |
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| Q |
414 |
gagagtccctgtatggagaactttgagcc |
442 |
Q |
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| T |
40126065 |
gagagtccctgtatggagaactttgagcc |
40126093 |
T |
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