View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15322_low_20 (Length: 432)
Name: NF15322_low_20
Description: NF15322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15322_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 18 - 421
Target Start/End: Complemental strand, 33039166 - 33038762
Alignment:
| Q |
18 |
atgtattttaacataaatcattatatgttttattcattttccgacaaa-tcaattttatatgattaattcatttgaaatcaatttaattactgcagagcc |
116 |
Q |
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|||||| | ||||||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33039166 |
atgtatctcaacataaatcattatatattttattcattttccgacaaaattaattttatatgattaattcatttgaaatcaatttaattactgcagagcc |
33039067 |
T |
|
| Q |
117 |
aaattaaaactatattgtatgttgtctttggcagtttcttatacttatgttagtttccatagaaaaagtattgtcccaatgtattgaactattgtttatt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33039066 |
aaattaaaactatattgtatgttgtctttggcagtttcttatacttatgttagtttccatagaaaaagtattgtcccaatgtattgaactattgtttatt |
33038967 |
T |
|
| Q |
217 |
tcttatgcattttaatatttatttcatagtactctatgatctagttaagaaaatcactaatctactttgtacatgtgcttaggtctcaatggccaaatta |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33038966 |
tcttatgcattttaatatttatttcatagtactctatgatctagttaagaaaatcactaatctactttgtacatgtgcttaggtctcaatggccaaatta |
33038867 |
T |
|
| Q |
317 |
gtaggtatagcccttagcctttgaaattatttttaactggacaaagagctatagaaaatttgctaagatttgagaagcatataatatataggtgatgtgt |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33038866 |
gtaggtatagcccttagcctttgaaattatttttaactggacaaagagctatagaaaatttgctaagatttgagaagcatataatatataggtgatgtgt |
33038767 |
T |
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| Q |
417 |
ccttt |
421 |
Q |
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||||| |
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| T |
33038766 |
ccttt |
33038762 |
T |
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