View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15322_low_21 (Length: 429)
Name: NF15322_low_21
Description: NF15322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15322_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 33268548 - 33268863
Alignment:
| Q |
1 |
agaagcaagtatagccacaggtgtgtaatataacagccttgtaaacaattccaaacaaagaatcactgttatagccatcacaatatttgatactgatgat |
100 |
Q |
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| T |
33268548 |
agaagcaagtatagccacaggtgtgtaatataacagccttgtaaacaattccaaacacagaatcactgttatagccatcacaatatttgatactgatgat |
33268647 |
T |
|
| Q |
101 |
tgacatcttgcactgaaatttactgctgttcttgaaaatgaacctgcaagtgtattagaattaaccaattataatactttacacaacatacttaaactag |
200 |
Q |
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| T |
33268648 |
tgacatcttgcactgaaatttactgctgttcttgaaaatgaacctgcaagtgtataagaattaaccaattataatactttacacaacatacttaaactag |
33268747 |
T |
|
| Q |
201 |
agatagannnnnnnnnnnnnnnnnnnnnataattggtacgaagtattcatcatgttttttcggtgattaatttttgtcgagaaattcaatcagtcatttt |
300 |
Q |
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| T |
33268748 |
agataga--ttttttttttcttttttttataattggtacgaagtattcatcatgttttttcggtgattaatttttgtcgagaaattcaatcagtcatttt |
33268845 |
T |
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| Q |
301 |
taaggagatctccactta |
318 |
Q |
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|||||||||||||||||| |
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| T |
33268846 |
taaggagatctccactta |
33268863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 321 - 412
Target Start/End: Original strand, 33268890 - 33268981
Alignment:
| Q |
321 |
atgaattgtgtatttggatgtccgatggtccgtcatcaaacgtgcgtctagttgaagttacatgaggtagcttttgatttgcggtgagtttc |
412 |
Q |
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| T |
33268890 |
atgaattgtgtatttggatgtccgatggtccgtcatcaaacgtgcgtctagttgaagttacatgaggtagcttttgatttgcggtgagtttc |
33268981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 4 - 148
Target Start/End: Original strand, 25705402 - 25705546
Alignment:
| Q |
4 |
agcaagtatagccacaggtgtgtaatataacagccttgtaaacaattccaaacaaagaatcactgttatagccatcacaatatttgatactgatgattga |
103 |
Q |
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|||||| ||||||| ||||||||| ||||| ||||||| ||| |||| || | | |||||| || || |||||||||||||||||||||| || |||| |
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| T |
25705402 |
agcaaggatagccataggtgtgtagtataatagccttgcaaataattgcaggaacaaaatcacagtaattgccatcacaatatttgatactgctgtttga |
25705501 |
T |
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| Q |
104 |
catcttgcactgaaatttactgctgttcttgaaaatgaacctgca |
148 |
Q |
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|||| |||||||||||| ||||||||||||||||||||||||||| |
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| T |
25705502 |
catcctgcactgaaattaactgctgttcttgaaaatgaacctgca |
25705546 |
T |
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