View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15322_low_26 (Length: 382)
Name: NF15322_low_26
Description: NF15322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15322_low_26 |
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Alignment Details
Target: chr6 (Bit Score: 314; Significance: 1e-177; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 22 - 365
Target Start/End: Complemental strand, 29002251 - 29001911
Alignment:
| Q |
22 |
ttgttacgaaatggttctgctttcacaatccttgcagtccaagtgtcacttttctttagatatggcttctttgttttctcctgtccttccattatagctt |
121 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
29002251 |
ttgttacgaaatggttcggctttcacaatccttgcagtccaagtgtcacttttctttagatatggcttctttgttttctcttgtccttccattatagctt |
29002152 |
T |
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| Q |
122 |
tccatgttgcttccaaactgtcatcatcacctttatcgctggaatccggggagttataatcgttgcagcgtttttcctgtattggatcagtgatgaattt |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29002151 |
tccatgttgcttccaaactgtcatcatcacctttatcgccggaatccggggagttataatcgttgcagcgtttttcctgtattggatcagtgatgaattt |
29002052 |
T |
|
| Q |
222 |
gttgaagaacaattcaaagtctttaactttatcatcagaatctgtcaaggaataatagtcctccttgctgcattttttctgtgatgggtgagtgatgaat |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29002051 |
gttgaagaacaattcaaagtctttaactttatcatcagaatctgtcaagg---aatagtcctccttgctgcattttttctgtgatgggtgagtgatgaat |
29001955 |
T |
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| Q |
322 |
tcgtcacagaacaattcagagtctttgacataaacaactctttt |
365 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
29001954 |
tcgtcacagaacaattcagagtctttgacatcaacaactctttt |
29001911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 22 - 270
Target Start/End: Complemental strand, 28962528 - 28962280
Alignment:
| Q |
22 |
ttgttacgaaatggttctgctttcacaatccttgcagtccaagtgtcacttttctttagatatggcttctttgttttctcctgtccttccattatagctt |
121 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||||| |||||||||| |||| |
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| T |
28962528 |
ttgttacgaaatggttctgctttcacaatccttgcagtccaagtgccacttttcttcagatgtggcttctttgttttctcctgtgcttccattattgctt |
28962429 |
T |
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| Q |
122 |
tccatgttgcttccaaactgtcatcatcacctttatcgctggaatccggggagttataatcgttgcagcgtttttcctgtattggatcagtgatgaattt |
221 |
Q |
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||||||||||||| ||||||||||||||||||||||| | || ||||| |||||||||||||||| | ||||||| || ||||||| ||||||||| |
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| T |
28962428 |
tccatgttgcttctaaactgtcatcatcacctttatcacctgagtccggcaagttataatcgttgcaacatttttccggtgatggatcatcgatgaattt |
28962329 |
T |
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| Q |
222 |
gttgaagaacaattcaaagtctttaactttatcatcagaatctgtcaag |
270 |
Q |
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|||| |||| ||| |||||||||||||| || |||||||||| |||| |
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| T |
28962328 |
gttgcagaataatctgaagtctttaactttgtcgtcagaatctggcaag |
28962280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 248
Target Start/End: Complemental strand, 28962262 - 28962206
Alignment:
| Q |
192 |
tttttcctgtattggatcagtgatgaatttgttgaagaacaattcaaagtctttaac |
248 |
Q |
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||||||| | || ||||||||||||||||||||| |||||||||| |||||||||| |
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| T |
28962262 |
tttttccggaatcggatcagtgatgaatttgttgtggaacaattcagagtctttaac |
28962206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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