View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15322_low_27 (Length: 379)
Name: NF15322_low_27
Description: NF15322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15322_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 17 - 370
Target Start/End: Original strand, 52484622 - 52484956
Alignment:
| Q |
17 |
aaaacgtcttgagagaatctaaggacatgttactattttttggttcttaatagaaaaatgtttgagttcatatgttatgtctgtattttggttcttaaag |
116 |
Q |
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| T |
52484622 |
aaaacgacttgagagaatctaaggacatgttactattttttggttcttaatagaaaaatgtttcagttcatatgttatgt------tttgtttttt---- |
52484711 |
T |
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| Q |
117 |
nnnnnnncaaggtattaaaaaatttatgagcacaacagtacaaagatgnnnnnnnnttgtaaacataaaatataggtgcaatttgataataggtgatggg |
216 |
Q |
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|||||||||||||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
52484712 |
-----ttcaaggtattaaaaaatttatgagcacaacattacaaagatgaaaaaaaattgtaaacacaaaatataggtgcaatttgataataggtgatggg |
52484806 |
T |
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| Q |
217 |
aataaagataaatgaaccnnnnnnntataaaagcacatggaagattgattgactcaagtattaccaaagtataagggaattgactcaagactttaaaata |
316 |
Q |
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|||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
52484807 |
aataaagataaatgaaccaaaaaattataaaagcacatggaagatt----gactcaagtattaccaaagtataagggaattgactcaagacttttaaata |
52484902 |
T |
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| Q |
317 |
gagatgccacaaaatggacctactccatttggccactttttgtagcagtattat |
370 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
52484903 |
cagataccacaaaatggacctactccatttggccactttttgtagcagtgttat |
52484956 |
T |
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