View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15322_low_28 (Length: 376)
Name: NF15322_low_28
Description: NF15322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15322_low_28 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 94 - 361
Target Start/End: Original strand, 11825332 - 11825599
Alignment:
| Q |
94 |
tattagttagtacaggattctaatattattcatttggttggttgatttattggatcatattgctacaacctagattttgtgtcgaaaaaatcaatacgtt |
193 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
11825332 |
tattagttagtacatgattctaatattattcatttggttggttgatttattggatcatattgctacaacctagattttgtgtcgaaaaaatcaacacgtt |
11825431 |
T |
|
| Q |
194 |
tgtaaaactcaagcctacccaattcatatatttagttctggaaccattccgtagacttagactcgcaatttagcttattccgcaaaatacgtgccaaaac |
293 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
11825432 |
tgtaaaactcaagcctaccgaattcatatatttagttctggaaccattccgttgacttagactcgcaatttaacttattccgcaaaatacgcgccaaaac |
11825531 |
T |
|
| Q |
294 |
ccgtaagcatttttccagcagaaaacccaacttcaaaaccactttctgagttcgtgtctagtccgaat |
361 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||| |
|
|
| T |
11825532 |
ccgtaagcatttttccagcagaaaacccaacttcaaaagcactttccgagttcgtttctagtccgaat |
11825599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 11825236 - 11825286
Alignment:
| Q |
1 |
atatatcaaatctcaagccactcgatctttggcagttaaaaaccttactaa |
51 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
11825236 |
atatatcaaatctcaagccactcaatctttggcagttaagaaccttactaa |
11825286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 317
Target Start/End: Complemental strand, 14175701 - 14175611
Alignment:
| Q |
227 |
agttctggaaccattccgtagacttagactcgcaatttagcttattccgcaaaatacgtgccaaaacccgtaagcatttttccagcagaaa |
317 |
Q |
| |
|
||||||||| ||||||| | ||| | |||| || | |||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
14175701 |
agttctggagccattccatcaactaaaactcacagtatagcttattccgcaaaatctacatcaaaacccgtaagcatttttccagcagaaa |
14175611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University