View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15322_low_29 (Length: 374)

Name: NF15322_low_29
Description: NF15322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15322_low_29
NF15322_low_29
[»] chr6 (9 HSPs)
chr6 (1-357)||(370583-370949)
chr6 (230-356)||(1470960-1471086)
chr6 (230-356)||(1459578-1459704)
chr6 (2-103)||(1453636-1453737)
chr6 (2-103)||(1465328-1465429)
chr6 (200-234)||(176354-176388)
chr6 (261-342)||(1453908-1453989)
chr6 (261-342)||(1465600-1465681)
chr6 (200-234)||(1442105-1442139)
[»] chr3 (5 HSPs)
chr3 (191-233)||(2442060-2442102)
chr3 (191-230)||(989420-989459)
chr3 (195-233)||(4142126-4142164)
chr3 (191-233)||(4157932-4157974)
chr3 (191-232)||(1931142-1931183)
[»] chr2 (3 HSPs)
chr2 (200-233)||(6538855-6538888)
chr2 (201-233)||(7160752-7160784)
chr2 (201-233)||(7168688-7168720)
[»] chr4 (2 HSPs)
chr4 (202-234)||(55419802-55419834)
chr4 (191-233)||(22672115-22672157)
[»] chr5 (2 HSPs)
chr5 (194-233)||(23766853-23766892)
chr5 (194-233)||(23816701-23816740)
[»] chr7 (1 HSPs)
chr7 (201-234)||(3927079-3927112)


Alignment Details
Target: chr6 (Bit Score: 308; Significance: 1e-173; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 357
Target Start/End: Original strand, 370583 - 370949
Alignment:
Q  1 atgagactctcaacgtagacattagaggtgaatgaagtagaaaggaggcattgaatgttaggagtctttgtagtgtgattcttgtaattgtaaacatata 100  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  370583 atgagactctcaacgtagacattagagatgaatgaagttgaaaggaggcattgaatgttaggagtctttgtagtgtgattcttgtaattgtaaacatata 370682  T
Q  101 cctgatcaaagaagtccaaaatcaattggtcatcctcttcaaaaatataaaattgattgatggaatcagcatgaccaaattccgtcgcgaaagaaatatt 200  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  370683 cctgatcaaagaagttcaaaatcaattggtcatcctcttcaaaaatataaaattgattgatggaatcagcatgaccaaattccgtcgcgaaagaaatatt 370782  T
Q  201 gaacaatttagtccaagaatctttatttc----------cataacccaaatgcccgtaaaagttttagtctgagcaaggatgcattagcaatccctagaa 290  Q
    |||||||||||||||||||||||||||||          ||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  370783 gaacaatttagtccaagaatctttatttccataattcttcataacccaaacgcccataaaagttttagtctgagcaaggatgcataagcaatccctagaa 370882  T
Q  291 acctccaagtggaattcaagcagaggttcatctagaccataatcaggctgcgaaatctcttgataat 357  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  370883 acctccaagtggaattcaagcagaggttcatctagaccataatcaggctgcgaaatctcttgataat 370949  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 230 - 356
Target Start/End: Original strand, 1470960 - 1471086
Alignment:
Q  230 cataacccaaatgcccgtaaaagttttagtctgagcaaggatgcattagcaatccctagaaacctccaagtggaattcaagcagaggttcatctagacca 329  Q
    ||||||||||||  ||  ||||| ||| || ||||||||||||||| || |||||||||||||| |||||   || | | ||||||||||||||| | ||    
T  1470960 cataacccaaatatccaaaaaagatttggtatgagcaaggatgcataagtaatccctagaaacccccaagctaaagttacgcagaggttcatctaaatca 1471059  T
Q  330 taatcaggctgcgaaatctcttgataa 356  Q
    |||||||||||  ||||||||||||||    
T  1471060 taatcaggctgtaaaatctcttgataa 1471086  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 230 - 356
Target Start/End: Original strand, 1459578 - 1459704
Alignment:
Q  230 cataacccaaatgcccgtaaaagttttagtctgagcaaggatgcattagcaatccctagaaacctccaagtggaattcaagcagaggttcatctagacca 329  Q
    ||||||||||||  ||  ||||| ||| || |||||||||| |||| || |||||||| ||||| |||||   || | | ||||||||||||||| ||||    
T  1459578 cataacccaaatatccaaaaaagattttgtatgagcaaggacgcataagtaatccctataaacccccaagctaaagttatgcagaggttcatctaaacca 1459677  T
Q  330 taatcaggctgcgaaatctcttgataa 356  Q
    |||| ||||||| ||||||||||||||    
T  1459678 taattaggctgcaaaatctcttgataa 1459704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 2 - 103
Target Start/End: Original strand, 1453636 - 1453737
Alignment:
Q  2 tgagactctcaacgtagacattagaggtgaatgaagtagaaaggaggcattgaatgttaggagtctttgtagtgtgattcttgtaattgtaaacatatac 101  Q
    |||||||||||||||||||||||||||| ||     ||||| |||||| |||||| |||||| |||||   ||  |||||||||||||||||||||||||    
T  1453636 tgagactctcaacgtagacattagaggtaaacctgttagaagggaggccttgaatcttaggaatctttagggtacgattcttgtaattgtaaacatatac 1453735  T
Q  102 ct 103  Q
    ||    
T  1453736 ct 1453737  T

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Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 2 - 103
Target Start/End: Original strand, 1465328 - 1465429
Alignment:
Q  2 tgagactctcaacgtagacattagaggtgaatgaagtagaaaggaggcattgaatgttaggagtctttgtagtgtgattcttgtaattgtaaacatatac 101  Q
    |||||||||||||||||||||||||||| ||     ||||| |||||| |||||| |||||| |||||   ||  |||||||||||||||||||||||||    
T  1465328 tgagactctcaacgtagacattagaggtaaacctgttagaagggaggccttgaatcttaggaatctttagggtacgattcttgtaattgtaaacatatac 1465427  T
Q  102 ct 103  Q
    ||    
T  1465428 ct 1465429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 234
Target Start/End: Complemental strand, 176388 - 176354
Alignment:
Q  200 tgaacaatttagtccaagaatctttatttccataa 234  Q
    |||||||||||||||||||||||||||||||||||    
T  176388 tgaacaatttagtccaagaatctttatttccataa 176354  T

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Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 261 - 342
Target Start/End: Original strand, 1453908 - 1453989
Alignment:
Q  261 tgagcaaggatgcattagcaatccctagaaacctccaagtggaattcaagcagaggttcatctagaccataatcaggctgcg 342  Q
    ||||||||||||||| ||||||||||||| ||  |||||   || ||| ||||||| |||||||||||| |||| |||||||    
T  1453908 tgagcaaggatgcataagcaatccctagatactcccaagctcaagtcatgcagaggatcatctagaccaaaatcgggctgcg 1453989  T

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Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 261 - 342
Target Start/End: Original strand, 1465600 - 1465681
Alignment:
Q  261 tgagcaaggatgcattagcaatccctagaaacctccaagtggaattcaagcagaggttcatctagaccataatcaggctgcg 342  Q
    ||||||||||||||| ||||||||||||| ||  |||||   || ||| ||||||| |||||||||||| |||| |||||||    
T  1465600 tgagcaaggatgcataagcaatccctagatactcccaagctcaagtcatgcagaggatcatctagaccaaaatcgggctgcg 1465681  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 234
Target Start/End: Original strand, 1442105 - 1442139
Alignment:
Q  200 tgaacaatttagtccaagaatctttatttccataa 234  Q
    |||||||||||||||||||||||||| ||||||||    
T  1442105 tgaacaatttagtccaagaatctttaattccataa 1442139  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 191 - 233
Target Start/End: Complemental strand, 2442102 - 2442060
Alignment:
Q  191 aagaaatattgaacaatttagtccaagaatctttatttccata 233  Q
    |||||| | ||||||||||||||||||||||||||||||||||    
T  2442102 aagaaagagtgaacaatttagtccaagaatctttatttccata 2442060  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 230
Target Start/End: Complemental strand, 989459 - 989420
Alignment:
Q  191 aagaaatattgaacaatttagtccaagaatctttatttcc 230  Q
    |||||||| ||||||||||||||||||| |||||||||||    
T  989459 aagaaatagtgaacaatttagtccaagactctttatttcc 989420  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 233
Target Start/End: Original strand, 4142126 - 4142164
Alignment:
Q  195 aatattgaacaatttagtccaagaatctttatttccata 233  Q
    |||| ||||||||||||||||||| ||||||||||||||    
T  4142126 aatagtgaacaatttagtccaagactctttatttccata 4142164  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 233
Target Start/End: Original strand, 4157932 - 4157974
Alignment:
Q  191 aagaaatattgaacaatttagtccaagaatctttatttccata 233  Q
    |||| ||| ||||||||||||||||||| ||||||||||||||    
T  4157932 aagagatagtgaacaatttagtccaagactctttatttccata 4157974  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 232
Target Start/End: Original strand, 1931142 - 1931183
Alignment:
Q  191 aagaaatattgaacaatttagtccaagaatctttatttccat 232  Q
    |||||||| |||||||||||||||| || |||||||||||||    
T  1931142 aagaaatagtgaacaatttagtccaggagtctttatttccat 1931183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 200 - 233
Target Start/End: Complemental strand, 6538888 - 6538855
Alignment:
Q  200 tgaacaatttagtccaagaatctttatttccata 233  Q
    ||||||||||||||||||||||||||||||||||    
T  6538888 tgaacaatttagtccaagaatctttatttccata 6538855  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 233
Target Start/End: Original strand, 7160752 - 7160784
Alignment:
Q  201 gaacaatttagtccaagaatctttatttccata 233  Q
    ||||||||||||||||||||| |||||||||||    
T  7160752 gaacaatttagtccaagaatcattatttccata 7160784  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 201 - 233
Target Start/End: Original strand, 7168688 - 7168720
Alignment:
Q  201 gaacaatttagtccaagaatctttatttccata 233  Q
    ||||||||||||||||||||| |||||||||||    
T  7168688 gaacaatttagtccaagaatcgttatttccata 7168720  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 202 - 234
Target Start/End: Complemental strand, 55419834 - 55419802
Alignment:
Q  202 aacaatttagtccaagaatctttatttccataa 234  Q
    |||||||||||||||||||||||||||||||||    
T  55419834 aacaatttagtccaagaatctttatttccataa 55419802  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 191 - 233
Target Start/End: Original strand, 22672115 - 22672157
Alignment:
Q  191 aagaaatattgaacaatttagtccaagaatctttatttccata 233  Q
    |||||||| ||||||||||||||||||| || |||||||||||    
T  22672115 aagaaatagtgaacaatttagtccaagattccttatttccata 22672157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 194 - 233
Target Start/End: Original strand, 23766853 - 23766892
Alignment:
Q  194 aaatattgaacaatttagtccaagaatctttatttccata 233  Q
    ||||| ||||||||||||||||||| ||||||||||||||    
T  23766853 aaatagtgaacaatttagtccaagactctttatttccata 23766892  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 194 - 233
Target Start/End: Original strand, 23816701 - 23816740
Alignment:
Q  194 aaatattgaacaatttagtccaagaatctttatttccata 233  Q
    ||||| ||||||||||||||||||| ||||||||||||||    
T  23816701 aaatagtgaacaatttagtccaagactctttatttccata 23816740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 201 - 234
Target Start/End: Complemental strand, 3927112 - 3927079
Alignment:
Q  201 gaacaatttagtccaagaatctttatttccataa 234  Q
    |||||||||||||||||||| |||||||||||||    
T  3927112 gaacaatttagtccaagaatttttatttccataa 3927079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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