View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15322_low_3 (Length: 610)
Name: NF15322_low_3
Description: NF15322
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15322_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 59; Significance: 1e-24; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 263 - 417
Target Start/End: Complemental strand, 12794996 - 12794847
Alignment:
| Q |
263 |
tgtatcatgacataactagggcatgaagcat--gtttgaattagtttcaaaaataaaagtagaaagataagtacgataagacacaacacaacataacagt |
360 |
Q |
| |
|
||||| |||||||||| ||||||||||| || |||||||||| ||||||||||||||||||||||||||| || ||||||||||||| ||||||| |
|
|
| T |
12794996 |
tgtataatgacataaccagggcatgaagtatatgtttgaattaatttcaaaaataaaagtagaaagataag-----taggacacaacacaacttaacagt |
12794902 |
T |
|
| Q |
361 |
acttgatcacataaatcatagatagcacaagacgcaaacagcgtaaaccagtaacaa |
417 |
Q |
| |
|
|||| ||||| |||||||| |||| |||||| ||||| | | ||||||| |||||| |
|
|
| T |
12794901 |
acttaatcac--aaatcataaatagaacaagatgcaaataacataaaccaataacaa |
12794847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 263 - 371
Target Start/End: Complemental strand, 12732195 - 12732090
Alignment:
| Q |
263 |
tgtatcatgacataactagggcatgaagcat--gtttgaattagtttcaaaaataaaagtagaaagataagtacgataagacacaacacaacataacagt |
360 |
Q |
| |
|
||||| |||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||| || ||||||||||||| ||||||| |
|
|
| T |
12732195 |
tgtataatgacataaccagggcatgaagcatatgtttgaattaatttcaaaaataaaagtagaaagataag-----taggacacaacacaacttaacagt |
12732101 |
T |
|
| Q |
361 |
acttgatcaca |
371 |
Q |
| |
|
|||| |||||| |
|
|
| T |
12732100 |
acttaatcaca |
12732090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 427 - 489
Target Start/End: Complemental strand, 12794811 - 12794749
Alignment:
| Q |
427 |
gatgccacaagattctactcatagtacaacaacatagaatatataccatcatctatgaagcaa |
489 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
12794811 |
gatgccacaagattctactcatagtacaacaacatagaattaatacaatcatctatgaagcaa |
12794749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 427 - 489
Target Start/End: Complemental strand, 12732010 - 12731948
Alignment:
| Q |
427 |
gatgccacaagattctactcatagtacaacaacatagaatatataccatcatctatgaagcaa |
489 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
12732010 |
gatgccataagattctactcatagtacaacaacatagaattaatacaatcatctatgaagcaa |
12731948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 109 - 227
Target Start/End: Complemental strand, 45505574 - 45505461
Alignment:
| Q |
109 |
gagccatgctatataaagcgcgaaaaaataaatcataacattccacgaaaggtgtattttagttaaatattagtatttcattttacttccggtttttgtg |
208 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||| | |||||||||||||||||||| ||||||| |||| | |||||||||||||||||||||| |
|
|
| T |
45505574 |
gagccatgctatataaagtg--aaaaaataaatcacgagattccacgaaaggtgtatttcagttaaacattaatc---cattttacttccggtttttgtg |
45505480 |
T |
|
| Q |
209 |
acatacatgcaggtagtgg |
227 |
Q |
| |
|
|||||||||||| ||||| |
|
|
| T |
45505479 |
gcatacatgcaggcagtgg |
45505461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 108 - 208
Target Start/End: Original strand, 32670998 - 32671094
Alignment:
| Q |
108 |
tgagccatgctatataaagcgcgaaaaaataaatcataacattccacgaaaggtgtattttagttaaatattagtatttcattttacttccggtttttgt |
207 |
Q |
| |
|
||||| |||||||||||||| | ||||||||||||| | |||| ||||||||||||||| ||||||| |||| | ||||||||||||| ||||||| |
|
|
| T |
32670998 |
tgagctatgctatataaagc-caaaaaaataaatcactagattctacgaaaggtgtatttcagttaaacattaatc---cattttacttccgttttttgt |
32671093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 113 - 227
Target Start/End: Original strand, 2304738 - 2304847
Alignment:
| Q |
113 |
catgctatataaagcgcgaaaaaataaatcataacattccacgaaaggtgtattttagttaaatattagtatttcattttacttccggtttttgtgacat |
212 |
Q |
| |
|
|||||||||||||||| |||||||| |||| | |||||||||| |||||||| ||||||| || | || ||||||| ||||||||||| || ||| |
|
|
| T |
2304738 |
catgctatataaagcg--aaaaaatacatcacgagattccacgaatagtgtatttgagttaaacatga---ttccattttatttccggtttttctggcat |
2304832 |
T |
|
| Q |
213 |
acatgcaggtagtgg |
227 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
2304833 |
tcatgtaggtagtgg |
2304847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University